Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0012650

Physical Location & Seq

Genomic Coordinates Forward (+)

14247401 .. 14249582

Gene Structure 2182 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g13920.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1380 bp

ATGGGGAGGAAAGGGAGTTGGTTTTCTACACTCAAGAAAGCCCTCACCCTTGATCCAAAGGAAAATAAAGATCAGAAGACTCACAAGTCAAAGAAATGGTTTGGGAAGTACAAGAACGAGGATGCGGTATCTTCCTGCGAAGAAACCGCATTGGTTATCCCTGCCCCCGCCCCTGCTCCTGCCCCAGCTAGTACCCCTACCCACCCTCCTCCTCCGACCCCGCCTCCAAAAGAAGATGTTGAGTTAGCTGAGGCTGAGAATGCACAGAACAAACATGCTTACTCTGTGGCACTTGCCACTGCCGTGGCTGCAGAGGCAGCTGTGGCTGCTGTTCAGGCTGCCGCAGAGGTTGTTCGCCTTACAGCTGTGCCCATGCCCCGTTACACCAGAAAGTCGATGCAGGAGGCTGCAGCTATCAAGATTCAGACTGCTTTCCGAGGGCACTTGGCAAGAAGGGCGTTACGAGCTTTGAGGGGGTTGGTGAGGTTGAAATCATTGATAGAGGGCCAATCTGTTAAACGACAAGCAACTACCACATTAAGATGCATGCAGACTGTTGCTCATGTGCAGTCTCAGATTCGTGCAAGGAGGATTAGAATGTCTGAGGAGAATCAGGCACTTCAGCGACAGCTCCAACAGAAACAAGAGAAAGAGCTTGAGAAACTCAAAGCTTCTAAAATGTGGAAGAACTCTCCGAAATCTGAACACCCGACCTTTATGGACCCCAGCAATCCCCACTGGGGTTGGAGTTGGTTGGAGCGATGGATGGCTGCAAGGCCATGGGAGAGCCGAAGTACAGCAGACTTCAATGACCGGGCCTCCATGAGGAGTGCTGCAAGCCGTGCCTCCATGTCTGTGGGGGAAATCACCAAAGCTTATGCTCTTCGTGATAAGCCTTCTCCTAGGACCCCTACTGCCCTAAGATCAAGCAGGCCTTCGAGTCGCATATCCCCTTCAACTCCTCTCTCCAAAGCACCATCGTCCGCATCAGTAACCAGGAGAACCCCAAGAGGAAATGGTCGGGGTGGAGATGAGGACTCCAGGAGAACGCTAAGCATCCAGTCAGAACGCTTCAACAGGAGGCATAGCATGGCAGGATTTTCCGTCAGAGCTGACGAGAGCCTTGCAAGCTCGCCTTCGGTTCAAAATTACAGGACACCCACGAAACCAACAAAGGCCAGGTCGAGGTTGGCAACCCTAAACTCAAACCAGTCAGAGAAGAACGGAACACCATCAGAGAAAGGATCAGTGACGTCTGTAAAGAAGCAGCTGTCATTCGCTGCTTCCCCGGCTGGACCAAGGAGACACTCCGGTCCTCTTAGATACGATTCTAGCTCCATTAAAGGCACTCCAGTGCACGCGAGGAAAGGCAGCAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005856 GO:0005874 GO:0008017 GO:0008092 GO:0015630 GO:0015631 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0099080 GO:0099081 GO:0099512 GO:0099513

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4005 IQ

Protein Analysis

460

Amino Acids

50.53

Weight (kDa)

10.91

Isoelectric Point (pI)

65.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012650)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g20080 FvH4_7g20080
malus_domestica	MD07G1178400.v1.1
prunus_persica	Prupe.2G217600_v2.0.a1 Prupe.2G217600_v2.0.a1 Prupe.2G217600_v2.0.a1 Prupe.2G217600_v2.0.a1
pyrus_communis	pycom01g13920 pycom07g17210
rosa_chinensis	RchiOBHm_Chr1g0364041
rosa_laevigata	RLG00000027522
rosa_multiflora	Rmu_sc0009677.1_g000016
rosa_roxburghii	Rroxscaffold_4G00292710
rosa_rugosa	Rorug01G0313100
rosa_samantha	Rh1AG320400 Rh1BG283600 Rh1CG300000 Rh1DG315100
rosa_wichuraiana	Rw1G028400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	85, 1311
AatII	GACGTC	1 cut(s)	1256
Acc36I	ACCTGC	1 cut(s)	1365
AccII	CGCG	1 cut(s)	1361
AciI	CCGC	6 cut(s)	125, 147, 168, 221, 342, 984
AclWI	GGATC	2 cut(s)	47, 1252
AcuI	CTGAAG	1 cut(s)	605
AcyI	GRCGYC	1 cut(s)	1253
AfaI	GTAC	3 cut(s)	110, 193, 796
AfiI	CCNNNNNNNGG	3 cut(s)	740, 825, 1185
AgsI	TTSAA	5 cut(s)	490, 808, 957, 1075, 1145
AjnI	CCWGG	3 cut(s)	995, 1040, 1178
AleI	CACNNNNGTG	2 cut(s)	302, 1352
Alw21I	GWGCWC	1 cut(s)	1359
Alw26I	GTCTC	2 cut(s)	576, 1297
Alw44I	GTGCAC	1 cut(s)	1355
AlwI	GGATC	2 cut(s)	47, 1252
AoxI	GGCC	5 cut(s)	505, 776, 816, 932, 1176
ApaLI	GTGCAC	1 cut(s)	1355
ArsI	GACNNNNNNTTYG	2 cut(s)	1166, 1198
AspA2I	CCTAGG	1 cut(s)	902
AspS9I	GGNCC	6 cut(s)	505, 721, 816, 906, 1295, 1313
AsuC2I	CCSGG	2 cut(s)	815, 1289
AsuHPI	GGTGA	3 cut(s)	37, 493, 859
AvaII	GGWCC	4 cut(s)	721, 906, 1295, 1313
AvrII	CCTAGG	1 cut(s)	902
BaeGI	GKGCMC	3 cut(s)	372, 444, 1359
BbsI	GAAGAC	1 cut(s)	83
Bbv12I	GWGCWC	1 cut(s)	1359
BbvCI	CCTCAGC	1 cut(s)	249
BccI	CCATC	4 cut(s)	756, 760, 985, 1240
BceAI	ACGGC	2 cut(s)	287, 825
BcgI	CGANNNNNNTGC	2 cut(s)	1106, 1140
BciT130I	CCWGG	3 cut(s)	997, 1042, 1180
BcnI	CCSGG	2 cut(s)	815, 1289
BcoDI	GTCTC	2 cut(s)	576, 1297
BfaI	CTAG	3 cut(s)	189, 903, 1332
BfmI	CTRYAG	2 cut(s)	309, 408
BfuAI	ACCTGC	1 cut(s)	1365
BlnI	CCTAGG	1 cut(s)	902
BlpI	GCTNAGC	1 cut(s)	1052
Bme1390I	CCNGG	5 cut(s)	815, 997, 1042, 1180, 1289
Bme18I	GGWCC	4 cut(s)	721, 906, 1295, 1313
BmgT120I	GGNCC	6 cut(s)	505, 721, 816, 906, 1295, 1313
BmiI	GGNNCC	2 cut(s)	723, 908
BmrFI	CCNGG	5 cut(s)	815, 997, 1042, 1180, 1289
BmrI	ACTGGG	1 cut(s)	748
BmsI	GCATC	5 cut(s)	112, 387, 533, 995, 1065
BmuI	ACTGGG	1 cut(s)	748
BpiI	GAAGAC	1 cut(s)	83
BpmI	CTGGAG	2 cut(s)	1024, 1335
Bpu10I	CCTNAGC	1 cut(s)	249
Bpu1102I	GCTNAGC	1 cut(s)	1052
BpuEI	CTTGAG	2 cut(s)	17, 677
BpuMI	CCSGG	2 cut(s)	815, 1289
BsaHI	GRCGYC	1 cut(s)	1253
BsaJI	CCNNGG	6 cut(s)	303, 436, 779, 902, 1287, 1298
BsaWI	WCCGGW	1 cut(s)	1310
BsaXI	ACNNNNNCTCC	6 cut(s)	190, 208, 220, 238, 803, 833
Bsc4I	CCNNNNNNNGG	3 cut(s)	740, 825, 1185
Bse1I	ACTGG	4 cut(s)	743, 1060, 1210, 1352
BseBI	CCWGG	3 cut(s)	997, 1042, 1180
BseDI	CCNNGG	6 cut(s)	303, 436, 779, 902, 1287, 1298
BseGI	GGATG	3 cut(s)	127, 771, 1056
BseLI	CCNNNNNNNGG	3 cut(s)	740, 825, 1185
BseMII	CTCAG	4 cut(s)	240, 246, 587, 594
BseNI	ACTGG	4 cut(s)	743, 1060, 1210, 1352
BseRI	GAGGAG	5 cut(s)	198, 201, 620, 841, 951
BseSI	GKGCMC	3 cut(s)	372, 444, 1359
BseYI	CCCAGC	2 cut(s)	184, 725
BsgI	GTGCAG	1 cut(s)	587
Bsh1236I	CGCG	1 cut(s)	1361
BshFI	GGCC	5 cut(s)	507, 778, 818, 934, 1178
BsiHKAI	GWGCWC	1 cut(s)	1359
BsiSI	CCGG	3 cut(s)	814, 1289, 1311
BslI	CCNNNNNNNGG	3 cut(s)	740, 825, 1185
BsmAI	GTCTC	2 cut(s)	576, 1297
BsmI	GAATGC	1 cut(s)	265
BsnI	GGCC	5 cut(s)	507, 778, 818, 934, 1178
Bsp1286I	GDGCHC	3 cut(s)	372, 444, 1359
Bsp143I	GATC	4 cut(s)	52, 70, 923, 1244
Bsp1720I	GCTNAGC	1 cut(s)	1052
Bsp19I	CCATGG	1 cut(s)	779
BspACI	CCGC	6 cut(s)	125, 147, 168, 221, 342, 984
BspANI	GGCC	5 cut(s)	507, 778, 818, 934, 1178
BspCNI	CTCAG	4 cut(s)	241, 247, 586, 595
BspFNI	CGCG	1 cut(s)	1361
BspLI	GGNNCC	2 cut(s)	723, 908
BspMAI	CTGCAG	2 cut(s)	313, 412
BspMI	ACCTGC	1 cut(s)	1365
BspPI	GGATC	2 cut(s)	47, 1252
BspQI	GCTCTTC	1 cut(s)	888
BsrI	ACTGG	4 cut(s)	743, 1060, 1210, 1352
BssECI	CCNNGG	6 cut(s)	303, 436, 779, 902, 1287, 1298
BssMI	GATC	4 cut(s)	52, 70, 923, 1244
BssNI	GRCGYC	1 cut(s)	1253
BssT1I	CCWWGG	3 cut(s)	779, 902, 1298
Bst2UI	CCWGG	3 cut(s)	997, 1042, 1180
Bst4CI	ACNGT	1 cut(s)	556
Bst6I	CTCTTC	1 cut(s)	888
BstACI	GRCGYC	1 cut(s)	1253
BstAPI	GCANNNNNTGC	1 cut(s)	842
BstC8I	GCNNGC	6 cut(s)	548, 838, 932, 1129, 1133, 1359
BstDEI	CTNAG	7 cut(s)	249, 255, 573, 603, 920, 1052, 1319
BstDSI	CCRYGG	2 cut(s)	303, 779
BstENI	CCTNNNNNAGG	1 cut(s)	823
BstF5I	GGATG	3 cut(s)	127, 771, 1056
BstFNI	CGCG	1 cut(s)	1361
BstKTI	GATC	4 cut(s)	55, 73, 926, 1247
BstMAI	GTCTC	2 cut(s)	576, 1297
BstMBI	GATC	4 cut(s)	52, 70, 923, 1244
BstNI	CCWGG	3 cut(s)	997, 1042, 1180
BstNSI	RCATGY	2 cut(s)	278, 550
BstSCI	CCNGG	5 cut(s)	813, 995, 1040, 1178, 1287
BstSFI	CTRYAG	2 cut(s)	309, 408
BstSLI	GKGCMC	3 cut(s)	372, 444, 1359
BstUI	CGCG	1 cut(s)	1361
BstV2I	GAAGAC	1 cut(s)	83
BstXI	CCANNNNNNTGG	2 cut(s)	304, 856
BsuRI	GGCC	5 cut(s)	507, 778, 818, 934, 1178
BtgI	CCRYGG	2 cut(s)	303, 779
BtgZI	GCGATG	1 cut(s)	775
BtsCI	GGATG	3 cut(s)	127, 771, 1056
BtsI	GCAGTG	1 cut(s)	297
BtsIMutI	CAGTG	4 cut(s)	297, 736, 1254, 1359
BveI	ACCTGC	1 cut(s)	1365
Cac8I	GCNNGC	6 cut(s)	548, 838, 932, 1129, 1133, 1359
Cfr13I	GGNCC	6 cut(s)	505, 721, 816, 906, 1295, 1313
Csp6I	GTAC	3 cut(s)	109, 192, 795
CspCI	CAANNNNNGTGG	2 cut(s)	725, 760
CviAII	CATG	8 cut(s)	275, 373, 547, 563, 780, 823, 850, 1090
CviQI	GTAC	3 cut(s)	109, 192, 795
DdeI	CTNAG	7 cut(s)	249, 255, 573, 603, 920, 1052, 1319
DpnI	GATC	4 cut(s)	54, 72, 925, 1246
DpnII	GATC	4 cut(s)	52, 70, 923, 1244
DrdI	GACNNNNNNGTC	2 cut(s)	85, 1311
DseDI	GACNNNNNNGTC	2 cut(s)	85, 1311
Eam1104I	CTCTTC	1 cut(s)	888
EarI	CTCTTC	1 cut(s)	888
Eco130I	CCWWGG	3 cut(s)	779, 902, 1298
Eco147I	AGGCCT	1 cut(s)	934
Eco47I	GGWCC	4 cut(s)	721, 906, 1295, 1313
Eco57I	CTGAAG	1 cut(s)	605
EcoNI	CCTNNNNNAGG	1 cut(s)	823
EcoO109I	RGGNCCY	1 cut(s)	906
EcoRII	CCWGG	3 cut(s)	995, 1040, 1178
EcoT14I	CCWWGG	3 cut(s)	779, 902, 1298
EcoT22I	ATGCAT	1 cut(s)	548
ErhI	CCWWGG	3 cut(s)	779, 902, 1298
FaeI	CATG	8 cut(s)	278, 376, 550, 566, 783, 826, 853, 1093
FalI	AAGNNNNNCTT	4 cut(s)	919, 951, 1120, 1152
FatI	CATG	8 cut(s)	274, 372, 546, 562, 779, 822, 849, 1089
FauI	CCCGC	2 cut(s)	175, 228
FokI	GGATG	3 cut(s)	134, 778, 1043
FspBI	CTAG	3 cut(s)	189, 903, 1332
GsaI	CCCAGC	2 cut(s)	188, 729
GsuI	CTGGAG	2 cut(s)	1024, 1335
HaeIII	GGCC	5 cut(s)	507, 778, 818, 934, 1178
HapII	CCGG	3 cut(s)	814, 1289, 1311
Hin1I	GRCGYC	1 cut(s)	1253
Hin1II	CATG	8 cut(s)	278, 376, 550, 566, 783, 826, 853, 1093
HindIII	AAGCTT	2 cut(s)	669, 873
HinfI	GANTC	7 cut(s)	79, 421, 577, 610, 940, 1037, 1328
HpaII	CCGG	3 cut(s)	814, 1289, 1311
HphI	GGTGA	3 cut(s)	37, 493, 859
Hpy166II	GTNNAC	1 cut(s)	1357
Hpy188III	TCNNGA	3 cut(s)	34, 418, 887
Hpy8I	GTNNAC	1 cut(s)	1357
HpyAV	CCTTC	5 cut(s)	447, 906, 945, 963, 1146
HpyCH4III	ACNGT	1 cut(s)	556
HpyCH4IV	ACGT	1 cut(s)	1253
HpyF3I	CTNAG	7 cut(s)	249, 255, 573, 603, 920, 1052, 1319
HpySE526I	ACGT	1 cut(s)	1253
Hsp92I	GRCGYC	1 cut(s)	1253
Hsp92II	CATG	8 cut(s)	278, 376, 550, 566, 783, 826, 853, 1093
Kzo9I	GATC	4 cut(s)	52, 70, 923, 1244
LguI	GCTCTTC	1 cut(s)	888
LmnI	GCTCC	4 cut(s)	181, 636, 757, 1340
LweI	GCATC	5 cut(s)	112, 387, 533, 995, 1065
MaeI	CTAG	3 cut(s)	189, 903, 1332
MaeII	ACGT	1 cut(s)	1253
MaeIII	GTNAC	4 cut(s)	380, 459, 991, 1249
MalI	GATC	4 cut(s)	54, 72, 925, 1246
MboI	GATC	4 cut(s)	52, 70, 923, 1244
MboII	GAAGA	7 cut(s)	88, 123, 152, 245, 697, 875, 1231
MhlI	GDGCHC	3 cut(s)	372, 444, 1359
MluCI	AATT	1 cut(s)	1147
MlyI	GAGTC	3 cut(s)	73, 949, 1031
MmeI	TCCRAC	4 cut(s)	239, 658, 725, 735
Mph1103I	ATGCAT	1 cut(s)	548
MseI	TTAA	3 cut(s)	516, 539, 1341
MslI	CAYNNNNRTG	4 cut(s)	302, 541, 854, 1352
MspA1I	CMGCKG	3 cut(s)	320, 365, 1270
MspI	CCGG	3 cut(s)	814, 1289, 1311
MspR9I	CCNGG	5 cut(s)	815, 997, 1042, 1180, 1289
Mva1269I	GAATGC	1 cut(s)	265
MvaI	CCWGG	3 cut(s)	997, 1042, 1180
MvnI	CGCG	1 cut(s)	1361
NciI	CCSGG	2 cut(s)	815, 1289
NcoI	CCATGG	1 cut(s)	779
NdeII	GATC	4 cut(s)	52, 70, 923, 1244
NlaIII	CATG	8 cut(s)	278, 376, 550, 566, 783, 826, 853, 1093
NlaIV	GGNNCC	2 cut(s)	723, 908
NmuCI	GTSAC	1 cut(s)	1249
NsiI	ATGCAT	1 cut(s)	548
NspI	RCATGY	2 cut(s)	278, 550
OliI	CACNNNNGTG	2 cut(s)	302, 1352
PaeI	GCATGC	1 cut(s)	550
PceI	AGGCCT	1 cut(s)	934
PciSI	GCTCTTC	1 cut(s)	888
PctI	GAATGC	1 cut(s)	265
PfeI	GAWTC	4 cut(s)	421, 577, 610, 1328
PfoI	TCCNGGA	1 cut(s)	1040
PleI	GAGTC	3 cut(s)	73, 948, 1031
PpsI	GAGTC	3 cut(s)	73, 948, 1031
PpuMI	RGGWCCY	1 cut(s)	906
Psp5II	RGGWCCY	1 cut(s)	906
Psp6I	CCWGG	3 cut(s)	995, 1040, 1178
PspFI	CCCAGC	2 cut(s)	184, 725
PspGI	CCWGG	3 cut(s)	995, 1040, 1178
PspN4I	GGNNCC	2 cut(s)	723, 908
PspPI	GGNCC	6 cut(s)	505, 721, 816, 906, 1295, 1313
PspPPI	RGGWCCY	1 cut(s)	906
PstI	CTGCAG	2 cut(s)	313, 412
PvuII	CAGCTG	3 cut(s)	320, 365, 1270
RsaI	GTAC	3 cut(s)	110, 193, 796
RsaNI	GTAC	3 cut(s)	109, 192, 795
RseI	CAYNNNNRTG	4 cut(s)	302, 541, 854, 1352
SapI	GCTCTTC	1 cut(s)	888
SaqAI	TTAA	3 cut(s)	516, 539, 1341
Sau3AI	GATC	4 cut(s)	52, 70, 923, 1244
Sau96I	GGNCC	6 cut(s)	505, 721, 816, 906, 1295, 1313
SchI	GAGTC	3 cut(s)	73, 949, 1031
ScrFI	CCNGG	5 cut(s)	815, 997, 1042, 1180, 1289
SduI	GDGCHC	3 cut(s)	372, 444, 1359
SfaNI	GCATC	5 cut(s)	112, 387, 533, 995, 1065
SfcI	CTRYAG	2 cut(s)	309, 408
SinI	GGWCC	4 cut(s)	721, 906, 1295, 1313
SmiMI	CAYNNNNRTG	4 cut(s)	302, 541, 854, 1352
SmlI	CTYRAG	2 cut(s)	32, 656
SmoI	CTYRAG	2 cut(s)	32, 656
SphI	GCATGC	1 cut(s)	550
Sse9I	AATT	1 cut(s)	1147
SseBI	AGGCCT	1 cut(s)	934
SsiI	CCGC	6 cut(s)	125, 147, 168, 221, 342, 984
SspMI	CTAG	3 cut(s)	189, 903, 1332
StuI	AGGCCT	1 cut(s)	934
StyD4I	CCNGG	5 cut(s)	813, 995, 1040, 1178, 1287
StyI	CCWWGG	3 cut(s)	779, 902, 1298
TaaI	ACNGT	1 cut(s)	556
TaiI	ACGT	1 cut(s)	1256
TaqI	TCGA	3 cut(s)	395, 938, 1184
TasI	AATT	1 cut(s)	1147
TatI	WGTACW	2 cut(s)	108, 794
TauI	GCSGC	1 cut(s)	344
TfiI	GAWTC	4 cut(s)	421, 577, 610, 1328
Tru1I	TTAA	3 cut(s)	516, 539, 1341
Tru9I	TTAA	3 cut(s)	516, 539, 1341
TscAI	CASTG	4 cut(s)	304, 743, 1254, 1359
TseFI	GTSAC	1 cut(s)	1249
Tsp45I	GTSAC	1 cut(s)	1249
TspGWI	ACGGA	2 cut(s)	1093, 1239
TspRI	CASTG	4 cut(s)	304, 743, 1254, 1359
VneI	GTGCAC	1 cut(s)	1355
VpaK11BI	GGWCC	4 cut(s)	721, 906, 1295, 1313
XagI	CCTNNNNNAGG	1 cut(s)	823
XceI	RCATGY	2 cut(s)	278, 550
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1186
XmaJI	CCTAGG	1 cut(s)	902
XspI	CTAG	3 cut(s)	189, 903, 1332
ZraI	GACGTC	1 cut(s)	1254
Zsp2I	ATGCAT	1 cut(s)	548

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.