FvH4_7g22710

Telomere repeat-binding protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
Physical Location & Seq
Forward (+)
17872028 .. 17877272
5245 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g22710.t8

Sequence Viewer

Length: 2094 bp
ATGGTGTTGAAGAAGAGGCTAGATTTTGGATTTAATGGGTTCCAGGTCCCAACCATACCCAAAGCTCCCAGATCAGCTAGAAGGAGGGGCCCACAAAAGAAGCCAGTTGAGGATGAACAAATCTGTGCGTTTGAATTACTGGCCTCTATAGCTGGCAAGCTATTGCAGGAGAGTGAAAGTTCATCCGCCTCTAGTAATGCTTCCCAAGGAGAGTCTCAGCCTGCCTTTGGTAAAGAGGTTAAGCAGGAAATACAAGATGAACACAAACTTCTGAAAGATGAATGTCTATATCAAGGCTGCTCTGAAGAGAGTGTTTCTTTAGAGCTGACCTCAAAAAGCATTGATCGGAAGTGTACTCTAAAAGAATTTCTGCATGCAGAGAGTGATACGGCTTTGGAACATGCTTCAATTATTACTAGTTCCCACAGCTCAGAGAATCTTGCTGGTCAGACGAAGCCTGTAATACGCAGTAGCAAGCCCACACTTCACAATTATTCCAGTAAATTAGGGAGAGGCTCCCCAGGTATTGGAGAGTCCTCTTTTGGTAATTTAGGAACTCCAAAAGGCAGTGAGGGATTAGAGACTGGAGGTTGTAATAGGGCTAACACATGCAGTTCCAAGGATCCAATGGAATTGCATGCAGAGTATCCTGCAACTGTCGATGGAGACAATAATGTCAAATTGTCGTTGTACAGGAATCTTATTCCTAATGCTTCTTTTTCCAGGCGTAGGAATCATATTAAATTAGGTATTAGAGATGATGACGAAAAGTTTTCTAGGTGCAATAAACTCAGCACTAAGGTAAAGGTCTTTAGGCCTCCATCTCGTATTGGAGACCGAAGAATAAGAAAGTTACTGACATCCAAGTATTGGAAAGCGGCTCCAAAACTGAGGGAATGTGATAACCTCAGATATGATGGGGGAGTAAAACCTACTTATCACAAGAGGAAAATCTTTTACAGTCGCGAACGATCTCAGCGTGACACTTTTTGTAAGAGGAGGAAAATGGTTGAACGAAGCTCGATAGTGACTTCTGATGGAGGATTCAGTGGTGAGAGTGTTTCTTATTCACCTGAGAAGGGCATGAATGGAGACAAAAGTGTTCCTGCAAATGGGGTGTCTTCTTCAGTCATAGGCCCTAAAGCTTCTCTCCACTCCAGGGATTCTCATGTGAAACTCAGAATCAAATCCTTTAGGGTACCAGAGCTTTTAATTGAGGTGCCAGAAACTGAAACTATCGGTTCCTTGAAGAGGACAGTTATGGAGGCAGTAAATGCAATACTTAATGGTGGCCTAAATGTTGGGGTGTTAGTTCAAGGTAAAAAGGTTAGGGATGACAACAGAACTCTACTGCAGAGTGGAATTTCTTGTAAAGACAATCTAGATTCACTGGGTTTTACATTGGAGCCTAGTCTTGTGGAAGCTCCTTCATCTTTGTGTCCTGGTGATCCTCCACCGTTGTCTTGTGGGGCATCAATACTGTTGGCTGGGTCTCCAAGCACACCTCTACTGGATCCAGGGATTCCTGATGCAATATCTGATCCCCCTCCTCTGACCAATTCAGGCAGTCTTGCTGAAATAAATCATGAATTGGTTTCCTCTCATATTGAGCCATTAATCATAAAAGCCATGCCAGAGTGCCAGGCAATAGTTGCTCTTCCTGACGTGAGCATGGAGCCACTAGCTGCAGTTCCTGTAAACCAGAGATCTAAGCGATCTGAGCTTGTGCAGCGTCGAACCAGGAGGCCATTCTCTGTGTCAGAAGTAGAAGCATTAGTGCAGGCTGTTGAGGACCTTGGGACCGGAAGGTGGCGTGATGTTAAATTGTGTGCATTTGAGAATGCAGATCATCGAACTTATGTGGACTTGAAGGACAAATGGAAGACCTTGGTTCATACCGCACAAATCTCTCCTCAGCAAAGAAGGGGAGAGCCTGTTCCGCAAGAGCTTTTGGACAGAGTATTGGCTGCCCATTCTTACTGGTGCCAACACCAGGCTAAGCAACAAGGCAAGCACCAGGCTTGTGTCCCGAGGATCACAGACACTTGCTCGACTGATAGACATGGAGCTGAAAGGTACTCAGCCATTGTATGA

Protein Analysis

698

Amino Acids

76.65

Weight (kDa)

9.04

Isoelectric Point (pI)

55.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ubiquitin_TPR1 PF23603 378 - 446 4.4e-37 Telomere repeat-binding protein 1-like, ubiquitin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 674
Acc65I GGTACC 1 cut(s) 1198
AccB1I GGYRCC 3 cut(s) 1198, 1219, 1983
AccB7I CCANNNNNTGG 2 cut(s) 527, 870
AccII CGCG 1 cut(s) 966
AciI CCGC 4 cut(s) 186, 878, 1899, 1940
AclWI GGATC 7 cut(s) 617, 630, 1442, 1508, 1521, 1535, 2042
AcsI RAATTY 2 cut(s) 365, 1362
AcuI CTGAAG 2 cut(s) 324, 1110
AfaI GTAC 4 cut(s) 355, 692, 1200, 2078
AgsI TTSAA 7 cut(s) 10, 134, 408, 1013, 1249, 1316, 1870
AhlI ACTAGT 1 cut(s) 416
AjiI CACGTC 1 cut(s) 1666
AloI GAACNNNNNNTCC 2 cut(s) 1920, 1952
Alw26I GTCTC 6 cut(s) 219, 575, 660, 828, 1086, 1497
AlwI GGATC 7 cut(s) 617, 630, 1442, 1508, 1521, 1535, 2042
AlwNI CAGNNNCTG 2 cut(s) 1229, 1694
Ama87I CYCGRG 1 cut(s) 2029
AoxI GGCC 6 cut(s) 88, 141, 815, 1135, 1291, 1745
ApaI GGGCCC 1 cut(s) 92
ApeKI GCWGC 4 cut(s) 297, 1685, 1729, 1967
ApoI RAATTY 2 cut(s) 365, 1362
ArsI GACNNNNNNTTYG 2 cut(s) 1103, 1135
AseI ATTAAT 1 cut(s) 1616
Asp718I GGTACC 1 cut(s) 1198
AspS9I GGNCC 6 cut(s) 46, 88, 89, 1136, 1792, 1800
AsuHPI GGTGA 3 cut(s) 1062, 1064, 1457
AvaI CYCGRG 1 cut(s) 2029
AvaII GGWCC 3 cut(s) 46, 1792, 1800
BaeGI GKGCMC 1 cut(s) 92
BamHI GGATCC 2 cut(s) 622, 1513
BanI GGYRCC 3 cut(s) 1198, 1219, 1983
BanII GRGCYC 1 cut(s) 92
BbsI GAAGAC 2 cut(s) 1113, 1889
BbvCI CCTCAGC 1 cut(s) 1914
BbvI GCAGC 4 cut(s) 284, 1672, 1741, 1954
BccI CCATC 4 cut(s) 656, 829, 911, 1031
BceAI ACGGC 1 cut(s) 405
BciVI GTATCC 1 cut(s) 657
BcoDI GTCTC 6 cut(s) 219, 575, 660, 828, 1086, 1497
BcuI ACTAGT 1 cut(s) 416
BfaI CTAG 8 cut(s) 20, 78, 192, 417, 777, 1382, 1410, 1682
BfmI CTRYAG 3 cut(s) 147, 1352, 1686
BfuI GTATCC 1 cut(s) 657
BglII AGATCT 1 cut(s) 1706
BisI GCNGC 5 cut(s) 298, 879, 1686, 1730, 1968
BlpI GCTNAGC 1 cut(s) 1998
BlsI GCNGC 5 cut(s) 299, 880, 1687, 1731, 1969
Bme18I GGWCC 3 cut(s) 46, 1792, 1800
BmeT110I CYCGRG 1 cut(s) 2029
BmgBI CACGTC 1 cut(s) 1666
BmgT120I GGNCC 6 cut(s) 46, 88, 89, 1136, 1792, 1800
BmrI ACTGGG 1 cut(s) 1400
BmsI GCATC 2 cut(s) 1481, 1519
BmuI ACTGGG 1 cut(s) 1400
BpiI GAAGAC 2 cut(s) 1113, 1889
BplI GAGNNNNNCTC 2 cut(s) 314, 346
BpmI CTGGAG 2 cut(s) 606, 1141
Bpu10I CCTNAGC 1 cut(s) 1914
Bpu1102I GCTNAGC 1 cut(s) 1998
BsaI GGTCTC 2 cut(s) 828, 1497
BsaJI CCNNGG 8 cut(s) 205, 520, 618, 1158, 1517, 1795, 1887, 2030
BsaWI WCCGGW 1 cut(s) 1802
BsaXI ACNNNNNCTCC 2 cut(s) 1920, 1950
Bse1I ACTGG 7 cut(s) 104, 144, 498, 589, 1395, 1515, 1985
BseDI CCNNGG 8 cut(s) 205, 520, 618, 1158, 1517, 1795, 1887, 2030
BseGI GGATG 4 cut(s) 118, 182, 860, 1339
BseNI ACTGG 7 cut(s) 104, 144, 498, 589, 1395, 1515, 1985
BseRI GAGGAG 3 cut(s) 1012, 1539, 1902
BseSI GKGCMC 1 cut(s) 92
BseXI GCAGC 4 cut(s) 284, 1672, 1741, 1954
BseYI CCCAGC 1 cut(s) 1487
BsgI GTGCAG 2 cut(s) 1748, 1799
Bsh1236I CGCG 1 cut(s) 966
BshFI GGCC 6 cut(s) 90, 143, 817, 1137, 1293, 1747
BshNI GGYRCC 3 cut(s) 1198, 1219, 1983
BsiHKCI CYCGRG 1 cut(s) 2029
BsiSI CCGG 1 cut(s) 1803
BslFI GGGAC 3 cut(s) 32, 1813, 2012
BsmAI GTCTC 6 cut(s) 219, 575, 660, 828, 1086, 1497
BsmFI GGGAC 3 cut(s) 32, 1813, 2012
BsmI GAATGC 1 cut(s) 1846
BsnI GGCC 6 cut(s) 90, 143, 817, 1137, 1293, 1747
Bso31I GGTCTC 2 cut(s) 828, 1497
BsoBI CYCGRG 1 cut(s) 2029
Bsp120I GGGCCC 1 cut(s) 88
Bsp1286I GDGCHC 1 cut(s) 92
Bsp1407I TGTACA 1 cut(s) 690
Bsp1720I GCTNAGC 1 cut(s) 1998
Bsp68I TCGCGA 1 cut(s) 966
BspACI CCGC 4 cut(s) 186, 878, 1899, 1940
BspANI GGCC 6 cut(s) 90, 143, 817, 1137, 1293, 1747
BspFNI CGCG 1 cut(s) 966
BspHI TCATGA 1 cut(s) 1585
BspMAI CTGCAG 2 cut(s) 1356, 1690
BspPI GGATC 7 cut(s) 617, 630, 1442, 1508, 1521, 1535, 2042
BspQI GCTCTTC 1 cut(s) 1662
BspT107I GGYRCC 3 cut(s) 1198, 1219, 1983
BspTNI GGTCTC 2 cut(s) 828, 1497
BsrGI TGTACA 1 cut(s) 690
BsrI ACTGG 7 cut(s) 104, 144, 498, 589, 1395, 1515, 1985
BssECI CCNNGG 8 cut(s) 205, 520, 618, 1158, 1517, 1795, 1887, 2030
BssT1I CCWWGG 4 cut(s) 205, 618, 1795, 1887
Bst4CI ACNGT 5 cut(s) 658, 962, 1258, 1458, 1482
Bst6I CTCTTC 4 cut(s) 8, 300, 1244, 1662
BstAPI GCANNNNNTGC 2 cut(s) 1274, 1652
BstAUI TGTACA 1 cut(s) 690
BstC8I GCNNGC 8 cut(s) 154, 158, 222, 375, 476, 639, 1782, 2012
BstENI CCTNNNNNAGG 1 cut(s) 1249
BstF5I GGATG 4 cut(s) 118, 182, 860, 1339
BstFNI CGCG 1 cut(s) 966
BstMAI GTCTC 6 cut(s) 219, 575, 660, 828, 1086, 1497
BstMWI GCNNNNNNNGC 6 cut(s) 149, 1274, 1652, 1720, 1729, 1939
BstNSI RCATGY 4 cut(s) 377, 404, 612, 641
BstSFI CTRYAG 3 cut(s) 147, 1352, 1686
BstSLI GKGCMC 1 cut(s) 92
BstUI CGCG 1 cut(s) 966
BstV1I GCAGC 4 cut(s) 284, 1672, 1741, 1954
BstV2I GAAGAC 2 cut(s) 1113, 1889
BstX2I RGATCY 3 cut(s) 622, 1513, 1706
BstYI RGATCY 3 cut(s) 622, 1513, 1706
BsuI GTATCC 1 cut(s) 657
BsuRI GGCC 6 cut(s) 90, 143, 817, 1137, 1293, 1747
BtrI CACGTC 1 cut(s) 1666
BtsCI GGATG 4 cut(s) 118, 182, 860, 1339
BtsI GCAGTG 1 cut(s) 574
BtsIMutI CAGTG 3 cut(s) 574, 1054, 1388
BtuMI TCGCGA 1 cut(s) 966
Cac8I GCNNGC 8 cut(s) 154, 158, 222, 375, 476, 639, 1782, 2012
CaiI CAGNNNCTG 2 cut(s) 1229, 1694
CciI TCATGA 1 cut(s) 1585
Cfr13I GGNCC 6 cut(s) 46, 88, 89, 1136, 1792, 1800
CseI GACGC 1 cut(s) 1721
Csp6I GTAC 4 cut(s) 354, 691, 1199, 2077
CviQI GTAC 4 cut(s) 354, 691, 1199, 2077
DrdI GACNNNNNNGTC 1 cut(s) 674
DseDI GACNNNNNNGTC 1 cut(s) 674
Eam1104I CTCTTC 4 cut(s) 8, 300, 1244, 1662
EarI CTCTTC 4 cut(s) 8, 300, 1244, 1662
EciI GGCGGA 1 cut(s) 175
Eco130I CCWWGG 4 cut(s) 205, 618, 1795, 1887
Eco147I AGGCCT 1 cut(s) 817
Eco24I GRGCYC 1 cut(s) 92
Eco31I GGTCTC 2 cut(s) 828, 1497
Eco47I GGWCC 3 cut(s) 46, 1792, 1800
Eco57I CTGAAG 2 cut(s) 324, 1110
Eco88I CYCGRG 1 cut(s) 2029
EcoNI CCTNNNNNAGG 1 cut(s) 1249
EcoO109I RGGNCCY 4 cut(s) 46, 88, 1136, 1792
EcoT14I CCWWGG 4 cut(s) 205, 618, 1795, 1887
EcoT38I GRGCYC 1 cut(s) 92
ErhI CCWWGG 4 cut(s) 205, 618, 1795, 1887
FaqI GGGAC 3 cut(s) 32, 1813, 2012
Fnu4HI GCNGC 5 cut(s) 298, 879, 1686, 1730, 1968
FokI GGATG 4 cut(s) 125, 169, 847, 1346
FriOI GRGCYC 1 cut(s) 92
Fsp4HI GCNGC 5 cut(s) 298, 879, 1686, 1730, 1968
FspBI CTAG 8 cut(s) 20, 78, 192, 417, 777, 1382, 1410, 1682
GluI GCNGC 5 cut(s) 298, 879, 1686, 1730, 1968
GsaI CCCAGC 1 cut(s) 1491
GsuI CTGGAG 2 cut(s) 606, 1141
HaeIII GGCC 6 cut(s) 90, 143, 817, 1137, 1293, 1747
HapII CCGG 1 cut(s) 1803
HgaI GACGC 1 cut(s) 1721
HindIII AAGCTT 1 cut(s) 1143
HpaII CCGG 1 cut(s) 1803
HphI GGTGA 3 cut(s) 1062, 1064, 1457
Hpy166II GTNNAC 3 cut(s) 354, 1699, 1864
Hpy188III TCNNGA 6 cut(s) 965, 1382, 1526, 1586, 1661, 2029
Hpy8I GTNNAC 3 cut(s) 354, 1699, 1864
Hpy99I CGWCG 1 cut(s) 1737
HpyAV CCTTC 6 cut(s) 75, 1072, 1437, 1800, 1864, 1917
HpyCH4III ACNGT 5 cut(s) 658, 962, 1258, 1458, 1482
HpyCH4IV ACGT 1 cut(s) 1665
HpyF10VI GCNNNNNNNGC 6 cut(s) 149, 1274, 1652, 1720, 1729, 1939
HpySE526I ACGT 1 cut(s) 1665
KpnI GGTACC 1 cut(s) 1202
LguI GCTCTTC 1 cut(s) 1662
LmnI GCTCC 7 cut(s) 70, 521, 886, 1405, 1429, 1675, 2066
Lsp1109I GCAGC 4 cut(s) 284, 1672, 1741, 1954
LweI GCATC 2 cut(s) 1481, 1519
MaeI CTAG 8 cut(s) 20, 78, 192, 417, 777, 1382, 1410, 1682
MaeII ACGT 1 cut(s) 1665
MaeIII GTNAC 3 cut(s) 852, 980, 1027
MboII GAAGA 9 cut(s) 22, 25, 317, 852, 1113, 1116, 1261, 1649, 1894
MflI RGATCY 3 cut(s) 622, 1513, 1706
MhlI GDGCHC 1 cut(s) 92
MlyI GAGTC 2 cut(s) 221, 542
MseI TTAA 7 cut(s) 33, 240, 741, 1211, 1284, 1616, 1821
MslI CAYNNNNRTG 1 cut(s) 1435
MspI CCGG 1 cut(s) 1803
Mva1269I GAATGC 1 cut(s) 1846
MvnI CGCG 1 cut(s) 966
MwoI GCNNNNNNNGC 6 cut(s) 149, 1274, 1652, 1720, 1729, 1939
NmuCI GTSAC 2 cut(s) 980, 1027
NruI TCGCGA 1 cut(s) 966
NspI RCATGY 4 cut(s) 377, 404, 612, 641
PaeI GCATGC 2 cut(s) 377, 641
PagI TCATGA 1 cut(s) 1585
PceI AGGCCT 1 cut(s) 817
PciSI GCTCTTC 1 cut(s) 1662
PcsI WCGNNNNNNNCGW 1 cut(s) 976
PctI GAATGC 1 cut(s) 1846
PfeI GAWTC 8 cut(s) 436, 697, 733, 1044, 1163, 1182, 1385, 1522
PflMI CCANNNNNTGG 2 cut(s) 527, 870
PkrI GCNGC 5 cut(s) 299, 880, 1687, 1731, 1969
PleI GAGTC 2 cut(s) 220, 541
PpsI GAGTC 2 cut(s) 220, 541
PpuMI RGGWCCY 2 cut(s) 46, 1792
PshBI ATTAAT 1 cut(s) 1616
Psp5II RGGWCCY 2 cut(s) 46, 1792
PspFI CCCAGC 1 cut(s) 1487
PspOMI GGGCCC 1 cut(s) 88
PspPI GGNCC 6 cut(s) 46, 88, 89, 1136, 1792, 1800
PspPPI RGGWCCY 2 cut(s) 46, 1792
PstI CTGCAG 2 cut(s) 1356, 1690
PstNI CAGNNNCTG 2 cut(s) 1229, 1694
PsuI RGATCY 3 cut(s) 622, 1513, 1706
RruI TCGCGA 1 cut(s) 966
RsaI GTAC 4 cut(s) 355, 692, 1200, 2078
RsaNI GTAC 4 cut(s) 354, 691, 1199, 2077
RseI CAYNNNNRTG 1 cut(s) 1435
SapI GCTCTTC 1 cut(s) 1662
SaqAI TTAA 7 cut(s) 33, 240, 741, 1211, 1284, 1616, 1821
SatI GCNGC 5 cut(s) 298, 879, 1686, 1730, 1968
Sau96I GGNCC 6 cut(s) 46, 88, 89, 1136, 1792, 1800
SchI GAGTC 2 cut(s) 221, 542
SduI GDGCHC 1 cut(s) 92
SfaNI GCATC 2 cut(s) 1481, 1519
SfcI CTRYAG 3 cut(s) 147, 1352, 1686
SinI GGWCC 3 cut(s) 46, 1792, 1800
SmiMI CAYNNNNRTG 1 cut(s) 1435
SpeI ACTAGT 1 cut(s) 416
SphI GCATGC 2 cut(s) 377, 641
SseBI AGGCCT 1 cut(s) 817
SsiI CCGC 4 cut(s) 186, 878, 1899, 1940
SspMI CTAG 8 cut(s) 20, 78, 192, 417, 777, 1382, 1410, 1682
StuI AGGCCT 1 cut(s) 817
StyI CCWWGG 4 cut(s) 205, 618, 1795, 1887
TaaI ACNGT 5 cut(s) 658, 962, 1258, 1458, 1482
TaiI ACGT 1 cut(s) 1668
TaqI TCGA 5 cut(s) 660, 1022, 1735, 1852, 2051
TaqII GACCGA 1 cut(s) 852
TatI WGTACW 2 cut(s) 353, 690
TauI GCSGC 1 cut(s) 881
TfiI GAWTC 8 cut(s) 436, 697, 733, 1044, 1163, 1182, 1385, 1522
Tru1I TTAA 7 cut(s) 33, 240, 741, 1211, 1284, 1616, 1821
Tru9I TTAA 7 cut(s) 33, 240, 741, 1211, 1284, 1616, 1821
TscAI CASTG 3 cut(s) 574, 1054, 1395
TseFI GTSAC 2 cut(s) 980, 1027
TseI GCWGC 4 cut(s) 297, 1685, 1729, 1967
Tsp45I GTSAC 2 cut(s) 980, 1027
TspDTI ATGAA 8 cut(s) 129, 171, 273, 294, 1100, 1419, 1602, 1883
TspRI CASTG 3 cut(s) 574, 1054, 1395
Van91I CCANNNNNTGG 2 cut(s) 527, 870
VpaK11BI GGWCC 3 cut(s) 46, 1792, 1800
VspI ATTAAT 1 cut(s) 1616
XagI CCTNNNNNAGG 1 cut(s) 1249
XapI RAATTY 2 cut(s) 365, 1362
XbaI TCTAGA 1 cut(s) 1381
XceI RCATGY 4 cut(s) 377, 404, 612, 641
XcmI CCANNNNNNNNNTGG 1 cut(s) 625
XspI CTAG 8 cut(s) 20, 78, 192, 417, 777, 1382, 1410, 1682
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.