Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0004907

Physical Location & Seq

Genomic Coordinates Forward (+)

45479197 .. 45479919

Gene Structure 723 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0336700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGTTGTGCATAGCTGTGAAGGCAGAAGGCTTCATTGCAATAGATATAGGGTTTGAGAACACAGCCGGACCACACAACGGCCAGGCAGTGGCGCTTCTAGTCAAGGGTGACCAATCAGCTTTCTTCCGATGCAAGATAAATGGATACCAAGACACATTGTATGCACACAACAGCCGCCAGTTCTTTAGGGAATGCAAGATCAGTGGCACTGTCGACTTCATCTTCGGCTACAGCACTGCAGTTTTCCAAATGTGCACCATTATTGCAAGAAAAGACCTAATCATGGCCTGGTTACAGTTACTGCCCACGGTCGTTTCGAAGAAGACTCAACCGGGTTTACATTCCAATTTTGTGACGTACGTGACTGCAGATGCTGATTTGTTGAGCAACATTACAGCTACACCCACATACTTGGGTCGACCTTGGGGTAGTGTAGTAACTCCCAAGGGTTGGATTGAATGGAATGGAAACCGTGGCATTGTCACTCTGTATTATGGTGAGTTCATGAATAAAGGGCCAGGTTCCGAGCTTGCAGGGCGGGTCAGATGGCTCGGTCATCATACTGATCCATCTGAGGCCGATCAGTTTACGGCCACCAACTTTATTGACGGAGATTCTTGGCTGCCATCCACAGGTATCCCATACACATCAGAATTGGGGAGTCCAATACCTCAACCTAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000723 GO:0000781 GO:0000782 GO:0000783 GO:0000784 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003691 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008301 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016043 GO:0031627 GO:0031974 GO:0031981 GO:0032200 GO:0032991 GO:0032993 GO:0033993 GO:0034641 GO:0042162 GO:0042221 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0060249 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0097305 GO:0098687 GO:1901360 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

227

Amino Acids

24.95

Weight (kDa)

6.19

Isoelectric Point (pI)

28.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pectinesterase	PF01095	4 - 205	1.2e-67	Pectinesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004907)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12560 AT3G12560 AT5G13820 AT5G13820
fragaria_vesca	FvH4_7g22710 FvH4_7g22710 FvH4_7g22710 FvH4_7g22710 FvH4_7g22710 FvH4_7g22710 FvH4_7g22710 FvH4_7g22710
malus_domestica	MD01G1135700.v1.1 MD07G1200400.v1.1
prunus_persica	Prupe.2G237100_v2.0.a1
pyrus_communis	pycom01g15650 pycom07g18730 pycom07g18740
rosa_chinensis	RchiOBHm_Chr1g0367801
rosa_laevigata	RLG00000027262
rosa_multiflora	Rmu_co8480775.1_g000001 Rmu_ssc0000395.1_g000024
rosa_roxburghii	Rroxscaffold_4G00289210
rosa_rugosa	Rorug01G0336700 Rorug01G0336800
rosa_samantha	Rh1AG343900 Rh1BG305800 Rh1CG321400 Rh1DG338000
rosa_wichuraiana	Rw1G030610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	88, 450
AccI	GTMKAC	2 cut(s)	213, 418
AciI	CCGC	2 cut(s)	175, 538
AclWI	GGATC	1 cut(s)	560
AcoI	YGGCCR	2 cut(s)	79, 591
AfaI	GTAC	1 cut(s)	359
AfiI	CCNNNNNNNGG	5 cut(s)	77, 88, 283, 450, 632
AgsI	TTSAA	1 cut(s)	458
AjnI	CCWGG	3 cut(s)	81, 287, 517
AluBI	AGCT	5 cut(s)	14, 119, 398, 529, 681
AluI	AGCT	5 cut(s)	14, 119, 398, 529, 681
Alw21I	GWGCWC	1 cut(s)	257
Alw44I	GTGCAC	1 cut(s)	253
AlwI	GGATC	1 cut(s)	560
AlwNI	CAGNNNCTG	2 cut(s)	301, 374
AoxI	GGCC	5 cut(s)	79, 285, 515, 576, 591
ApaLI	GTGCAC	1 cut(s)	253
ApeKI	GCWGC	1 cut(s)	622
ArsI	GACNNNNNNTTYG	2 cut(s)	206, 238
AspLEI	GCGC	1 cut(s)	94
AspS9I	GGNCC	2 cut(s)	68, 515
AsuC2I	CCSGG	1 cut(s)	333
AsuHPI	GGTGA	2 cut(s)	119, 509
AsuII	TTCGAA	1 cut(s)	317
AvaII	GGWCC	1 cut(s)	68
BaeGI	GKGCMC	1 cut(s)	257
BbsI	GAAGAC	1 cut(s)	329
Bbv12I	GWGCWC	1 cut(s)	257
BbvI	GCAGC	1 cut(s)	609
BccI	CCATC	3 cut(s)	540, 577, 634
BceAI	ACGGC	2 cut(s)	94, 606
BciT130I	CCWGG	3 cut(s)	83, 289, 519
BciVI	GTATCC	2 cut(s)	137, 647
BcnI	CCSGG	1 cut(s)	333
BfaI	CTAG	2 cut(s)	98, 678
BfmI	CTRYAG	3 cut(s)	229, 237, 366
BfoI	RGCGCY	1 cut(s)	95
BfuI	GTATCC	2 cut(s)	137, 647
BisI	GCNGC	2 cut(s)	175, 623
BlsI	GCNGC	2 cut(s)	176, 624
Bme1390I	CCNGG	4 cut(s)	83, 289, 333, 519
Bme18I	GGWCC	1 cut(s)	68
BmgT120I	GGNCC	2 cut(s)	68, 515
BmiI	GGNNCC	1 cut(s)	523
BmrFI	CCNGG	4 cut(s)	83, 289, 333, 519
BmsI	GCATC	2 cut(s)	119, 361
BpiI	GAAGAC	1 cut(s)	329
Bpu14I	TTCGAA	1 cut(s)	317
BpuMI	CCSGG	1 cut(s)	333
BsaAI	YACGTR	1 cut(s)	361
BsaJI	CCNNGG	4 cut(s)	306, 422, 444, 472
Bsc4I	CCNNNNNNNGG	5 cut(s)	77, 88, 283, 450, 632
Bse1I	ACTGG	1 cut(s)	178
Bse3DI	GCAATG	1 cut(s)	33
BseBI	CCWGG	3 cut(s)	83, 289, 519
BseDI	CCNNGG	4 cut(s)	306, 422, 444, 472
BseGI	GGATG	1 cut(s)	626
BseLI	CCNNNNNNNGG	5 cut(s)	77, 88, 283, 450, 632
BseMI	GCAATG	1 cut(s)	33
BseMII	CTCAG	1 cut(s)	564
BseNI	ACTGG	1 cut(s)	178
BseSI	GKGCMC	1 cut(s)	257
BseXI	GCAGC	1 cut(s)	609
Bsh1285I	CGRYCG	1 cut(s)	312
BshFI	GGCC	5 cut(s)	81, 287, 517, 578, 593
BsiEI	CGRYCG	1 cut(s)	312
BsiHKAI	GWGCWC	1 cut(s)	257
BsiSI	CCGG	2 cut(s)	66, 332
BsiWI	CGTACG	1 cut(s)	357
BslI	CCNNNNNNNGG	5 cut(s)	77, 88, 283, 450, 632
BsmI	GAATGC	1 cut(s)	197
BsnI	GGCC	5 cut(s)	81, 287, 517, 578, 593
Bsp119I	TTCGAA	1 cut(s)	317
Bsp1286I	GDGCHC	1 cut(s)	257
Bsp143I	GATC	3 cut(s)	198, 565, 580
BspACI	CCGC	2 cut(s)	175, 538
BspANI	GGCC	5 cut(s)	81, 287, 517, 578, 593
BspCNI	CTCAG	1 cut(s)	565
BspHI	TCATGA	1 cut(s)	504
BspLI	GGNNCC	1 cut(s)	523
BspMAI	CTGCAG	2 cut(s)	241, 370
BspPI	GGATC	1 cut(s)	560
BspT104I	TTCGAA	1 cut(s)	317
BsrDI	GCAATG	1 cut(s)	33
BsrI	ACTGG	1 cut(s)	178
BssECI	CCNNGG	4 cut(s)	306, 422, 444, 472
BssMI	GATC	3 cut(s)	198, 565, 580
BssT1I	CCWWGG	2 cut(s)	422, 444
Bst2UI	CCWGG	3 cut(s)	83, 289, 519
Bst4CI	ACNGT	4 cut(s)	211, 297, 310, 473
BstBAI	YACGTR	1 cut(s)	361
BstBI	TTCGAA	1 cut(s)	317
BstC8I	GCNNGC	1 cut(s)	531
BstDEI	CTNAG	1 cut(s)	573
BstDSI	CCRYGG	2 cut(s)	306, 472
BstEII	GGTNACC	1 cut(s)	107
BstF5I	GGATG	1 cut(s)	626
BstH2I	RGCGCY	1 cut(s)	95
BstHHI	GCGC	1 cut(s)	94
BstKTI	GATC	3 cut(s)	201, 568, 583
BstMBI	GATC	3 cut(s)	198, 565, 580
BstMCI	CGRYCG	1 cut(s)	312
BstMWI	GCNNNNNNNGC	2 cut(s)	20, 535
BstNI	CCWGG	3 cut(s)	83, 289, 519
BstPI	GGTNACC	1 cut(s)	107
BstSCI	CCNGG	4 cut(s)	81, 287, 331, 517
BstSFI	CTRYAG	3 cut(s)	229, 237, 366
BstSLI	GKGCMC	1 cut(s)	257
BstV1I	GCAGC	1 cut(s)	609
BstV2I	GAAGAC	1 cut(s)	329
BstXI	CCANNNNNNTGG	1 cut(s)	412
BsuI	GTATCC	2 cut(s)	137, 647
BsuRI	GGCC	5 cut(s)	81, 287, 517, 578, 593
BtgI	CCRYGG	2 cut(s)	306, 472
BtsCI	GGATG	1 cut(s)	626
BtsI	GCAGTG	2 cut(s)	93, 234
BtsIMutI	CAGTG	4 cut(s)	93, 207, 208, 234
Cac8I	GCNNGC	1 cut(s)	531
CaiI	CAGNNNCTG	2 cut(s)	301, 374
CciI	TCATGA	1 cut(s)	504
CfoI	GCGC	1 cut(s)	94
Cfr13I	GGNCC	2 cut(s)	68, 515
Csp6I	GTAC	1 cut(s)	358
CspCI	CAANNNNNGTGG	2 cut(s)	184, 219
CviAII	CATG	2 cut(s)	283, 505
CviQI	GTAC	1 cut(s)	358
DdeI	CTNAG	1 cut(s)	573
DpnI	GATC	3 cut(s)	200, 567, 582
DpnII	GATC	3 cut(s)	198, 565, 580
EaeI	YGGCCR	2 cut(s)	79, 591
Eco130I	CCWWGG	2 cut(s)	422, 444
Eco47I	GGWCC	1 cut(s)	68
Eco91I	GGTNACC	1 cut(s)	107
EcoO65I	GGTNACC	1 cut(s)	107
EcoRII	CCWGG	3 cut(s)	81, 287, 517
EcoT14I	CCWWGG	2 cut(s)	422, 444
ErhI	CCWWGG	2 cut(s)	422, 444
FaeI	CATG	2 cut(s)	286, 508
FaiI	YATR	9 cut(s)	11, 47, 162, 284, 409, 495, 506, 561, 643
FatI	CATG	2 cut(s)	282, 504
FauI	CCCGC	1 cut(s)	531
FblI	GTMKAC	2 cut(s)	213, 418
Fnu4HI	GCNGC	2 cut(s)	175, 623
FokI	GGATG	1 cut(s)	613
Fsp4HI	GCNGC	2 cut(s)	175, 623
FspBI	CTAG	2 cut(s)	98, 678
GlaI	GCGC	1 cut(s)	93
GluI	GCNGC	2 cut(s)	175, 623
HaeII	RGCGCY	1 cut(s)	95
HaeIII	GGCC	5 cut(s)	81, 287, 517, 578, 593
HapII	CCGG	2 cut(s)	66, 332
HhaI	GCGC	1 cut(s)	94
Hin1II	CATG	2 cut(s)	286, 508
Hin6I	GCGC	1 cut(s)	92
HinP1I	GCGC	1 cut(s)	92
HincII	GTYRAC	2 cut(s)	214, 419
HindII	GTYRAC	2 cut(s)	214, 419
HinfI	GANTC	3 cut(s)	325, 614, 661
HpaII	CCGG	2 cut(s)	66, 332
HphI	GGTGA	2 cut(s)	119, 509
Hpy166II	GTNNAC	5 cut(s)	214, 255, 338, 419, 588
Hpy188I	TCNGA	5 cut(s)	128, 526, 545, 574, 652
Hpy188III	TCNNGA	1 cut(s)	505
Hpy8I	GTNNAC	5 cut(s)	214, 255, 338, 419, 588
HpyAV	CCTTC	2 cut(s)	13, 20
HpyCH4III	ACNGT	4 cut(s)	211, 297, 310, 473
HpyCH4IV	ACGT	2 cut(s)	356, 360
HpyF10VI	GCNNNNNNNGC	2 cut(s)	20, 535
HpyF3I	CTNAG	1 cut(s)	573
HpySE526I	ACGT	2 cut(s)	356, 360
Hsp92II	CATG	2 cut(s)	286, 508
HspAI	GCGC	1 cut(s)	92
Kzo9I	GATC	3 cut(s)	198, 565, 580
Lsp1109I	GCAGC	1 cut(s)	609
LweI	GCATC	2 cut(s)	119, 361
MaeI	CTAG	2 cut(s)	98, 678
MaeII	ACGT	2 cut(s)	356, 360
MaeIII	GTNAC	7 cut(s)	107, 291, 297, 352, 361, 436, 481
MalI	GATC	3 cut(s)	200, 567, 582
MboI	GATC	3 cut(s)	198, 565, 580
MboII	GAAGA	4 cut(s)	115, 214, 331, 334
MhlI	GDGCHC	1 cut(s)	257
MluCI	AATT	2 cut(s)	346, 653
MlyI	GAGTC	2 cut(s)	319, 670
MmeI	TCCRAC	1 cut(s)	431
MnlI	CCTC	2 cut(s)	568, 681
MslI	CAYNNNNRTG	1 cut(s)	14
MspI	CCGG	2 cut(s)	66, 332
MspR9I	CCNGG	4 cut(s)	83, 289, 333, 519
Mva1269I	GAATGC	1 cut(s)	197
MvaI	CCWGG	3 cut(s)	83, 289, 519
MwoI	GCNNNNNNNGC	2 cut(s)	20, 535
NciI	CCSGG	1 cut(s)	333
NdeII	GATC	3 cut(s)	198, 565, 580
NlaIII	CATG	2 cut(s)	286, 508
NlaIV	GGNNCC	1 cut(s)	523
NmuCI	GTSAC	4 cut(s)	107, 352, 361, 481
NspV	TTCGAA	1 cut(s)	317
PagI	TCATGA	1 cut(s)	504
PcsI	WCGNNNNNNNCGW	1 cut(s)	314
PctI	GAATGC	1 cut(s)	197
PfeI	GAWTC	1 cut(s)	614
Pfl23II	CGTACG	1 cut(s)	357
PflMI	CCANNNNNTGG	2 cut(s)	88, 450
PkrI	GCNGC	2 cut(s)	176, 624
PleI	GAGTC	2 cut(s)	319, 669
PpsI	GAGTC	2 cut(s)	319, 669
Ppu21I	YACGTR	1 cut(s)	361
Psp6I	CCWGG	3 cut(s)	81, 287, 517
PspEI	GGTNACC	1 cut(s)	107
PspGI	CCWGG	3 cut(s)	81, 287, 517
PspLI	CGTACG	1 cut(s)	357
PspN4I	GGNNCC	1 cut(s)	523
PspPI	GGNCC	2 cut(s)	68, 515
PstI	CTGCAG	2 cut(s)	241, 370
PstNI	CAGNNNCTG	2 cut(s)	301, 374
RsaI	GTAC	1 cut(s)	359
RsaNI	GTAC	1 cut(s)	358
RseI	CAYNNNNRTG	1 cut(s)	14
SalI	GTCGAC	2 cut(s)	212, 417
SatI	GCNGC	2 cut(s)	175, 623
Sau3AI	GATC	3 cut(s)	198, 565, 580
Sau96I	GGNCC	2 cut(s)	68, 515
SchI	GAGTC	2 cut(s)	319, 670
ScrFI	CCNGG	4 cut(s)	83, 289, 333, 519
SduI	GDGCHC	1 cut(s)	257
SfaNI	GCATC	2 cut(s)	119, 361
SfcI	CTRYAG	3 cut(s)	229, 237, 366
SfuI	TTCGAA	1 cut(s)	317
SinI	GGWCC	1 cut(s)	68
SmiMI	CAYNNNNRTG	1 cut(s)	14
Sse9I	AATT	2 cut(s)	346, 653
SsiI	CCGC	2 cut(s)	175, 538
SspMI	CTAG	2 cut(s)	98, 678
StyD4I	CCNGG	4 cut(s)	81, 287, 331, 517
StyI	CCWWGG	2 cut(s)	422, 444
TaaI	ACNGT	4 cut(s)	211, 297, 310, 473
TaiI	ACGT	2 cut(s)	359, 363
TaqI	TCGA	3 cut(s)	213, 317, 418
TaqII	GACCGA	1 cut(s)	542
TasI	AATT	2 cut(s)	346, 653
TauI	GCSGC	1 cut(s)	177
TfiI	GAWTC	1 cut(s)	614
TscAI	CASTG	4 cut(s)	93, 208, 214, 241
TseFI	GTSAC	4 cut(s)	107, 352, 361, 481
TseI	GCWGC	1 cut(s)	622
Tsp45I	GTSAC	4 cut(s)	107, 352, 361, 481
TspDTI	ATGAA	4 cut(s)	22, 208, 493, 521
TspGWI	ACGGA	1 cut(s)	624
TspRI	CASTG	4 cut(s)	93, 208, 214, 241
Van91I	CCANNNNNTGG	2 cut(s)	88, 450
VneI	GTGCAC	1 cut(s)	253
VpaK11BI	GGWCC	1 cut(s)	68
XmiI	GTMKAC	2 cut(s)	213, 418
XspI	CTAG	2 cut(s)	98, 678

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.