Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0004907

Physical Location & Seq

Genomic Coordinates Forward (+)

21141220 .. 21142590

Gene Structure 1371 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g18740.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGCAGATGGGAATTTCTTCCAAAGACAGTTTGGATTCTCTGGGTTTTATGTTGGAGCCTAGTCCCGTGCAAGCTTCTGCATTTTTGTGTTCTGGCGATCCTCCATTTTCATGCGAGATGGTGGCCAGGTCCCCAGGCACACCCGTCTTGGACTCTCCAATGTCTGATGTGTTGTCTGACATTCCTCCTATAACCAATTCAGGGAGTCTTGCTGAAACTAAGCATGAACCAGTTTCCTCTCATATTGACATATTGACCAACAAAACAATGCTGGAATCCCAGGCGCTAGTTGCGATTCCAGAAATGAGCATGGAACCACTAGCCATAGTTCCTGTGAGCCAAAAAACTAAGCGATCTGAGCTTGCACAGCGTCGAACCAGGAGACCATTCTCTGTCTCAGAAGTCGAAGCATTGGTGACAGCAGTTGAGGAACTTGGAACCGGAAGGTGGCGCGATGTTAAATTGCGTGCATTTGAGAATGCAGATCATCGAACTTATGTGGACCTGAAGGATAAATGGAAAACCTTAGTCCACACCGCAAAAATCTCTCCTCAACAAAGAAGGGGAGAGCCCGTTCCTCAGGAGCTTCTGGACCGAGTGTTGGCTGCCCATTCTTACTGGTGCCAACACCAAGCAAAGCAACACAGCAAGCACCCGGCCTTGCCAGCATTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000723 GO:0000781 GO:0000782 GO:0000783 GO:0000784 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003691 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008301 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016043 GO:0031627 GO:0031974 GO:0031981 GO:0032200 GO:0032991 GO:0032993 GO:0033993 GO:0034641 GO:0042162 GO:0042221 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0060249 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0097305 GO:0098687 GO:1901360 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

225

Amino Acids

24.82

Weight (kDa)

6.45

Isoelectric Point (pI)

66.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004907)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12560 AT3G12560 AT5G13820 AT5G13820
fragaria_vesca	FvH4_7g22710 FvH4_7g22710 FvH4_7g22710 FvH4_7g22710 FvH4_7g22710 FvH4_7g22710 FvH4_7g22710 FvH4_7g22710
malus_domestica	MD01G1135700.v1.1 MD07G1200400.v1.1
prunus_persica	Prupe.2G237100_v2.0.a1
pyrus_communis	pycom01g15650 pycom07g18730 pycom07g18740
rosa_chinensis	RchiOBHm_Chr1g0367801
rosa_laevigata	RLG00000027262
rosa_multiflora	Rmu_co8480775.1_g000001 Rmu_ssc0000395.1_g000024
rosa_roxburghii	Rroxscaffold_4G00289210
rosa_rugosa	Rorug01G0336700 Rorug01G0336800
rosa_samantha	Rh1AG343900 Rh1BG305800 Rh1CG321400 Rh1DG338000
rosa_wichuraiana	Rw1G030610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	621
AccII	CGCG	1 cut(s)	453
AciI	CCGC	1 cut(s)	537
AclWI	GGATC	1 cut(s)	92
AcoI	YGGCCR	1 cut(s)	123
AcsI	RAATTY	1 cut(s)	12
AcuI	CTGAAG	1 cut(s)	527
AfiI	CCNNNNNNNGG	3 cut(s)	201, 447, 601
AjnI	CCWGG	4 cut(s)	125, 133, 279, 377
AloI	GAACNNNNNNTCC	2 cut(s)	558, 590
AluBI	AGCT	3 cut(s)	74, 361, 586
AluI	AGCT	3 cut(s)	74, 361, 586
Alw26I	GTCTC	2 cut(s)	376, 400
AlwI	GGATC	1 cut(s)	92
AoxI	GGCC	2 cut(s)	123, 657
ApeKI	GCWGC	1 cut(s)	605
ApoI	RAATTY	1 cut(s)	12
Asp700I	GAANNNNTTC	1 cut(s)	16
AspLEI	GCGC	2 cut(s)	286, 453
AspS9I	GGNCC	3 cut(s)	129, 502, 592
AsuC2I	CCSGG	1 cut(s)	656
AsuHPI	GGTGA	1 cut(s)	427
AvaII	GGWCC	3 cut(s)	129, 502, 592
AxyI	CCTNAGG	1 cut(s)	579
BalI	TGGCCA	1 cut(s)	125
BanI	GGYRCC	1 cut(s)	621
BanII	GRGCYC	1 cut(s)	573
BbvI	GCAGC	1 cut(s)	592
BccI	CCATC	1 cut(s)	112
BciT130I	CCWGG	4 cut(s)	127, 135, 281, 379
BcnI	CCSGG	1 cut(s)	656
BcoDI	GTCTC	2 cut(s)	376, 400
BfaI	CTAG	3 cut(s)	60, 287, 320
BfoI	RGCGCY	1 cut(s)	287
BisI	GCNGC	1 cut(s)	606
BlsI	GCNGC	1 cut(s)	607
Bme1390I	CCNGG	5 cut(s)	127, 135, 281, 379, 656
Bme18I	GGWCC	3 cut(s)	129, 502, 592
BmgT120I	GGNCC	3 cut(s)	129, 502, 592
BmiI	GGNNCC	5 cut(s)	57, 131, 315, 439, 623
BmrFI	CCNGG	5 cut(s)	127, 135, 281, 379, 656
BpuMI	CCSGG	1 cut(s)	656
BsaI	GGTCTC	1 cut(s)	376
BsaJI	CCNNGG	2 cut(s)	133, 279
BsaWI	WCCGGW	1 cut(s)	440
BsaXI	ACNNNNNCTCC	2 cut(s)	558, 588
Bsc4I	CCNNNNNNNGG	3 cut(s)	201, 447, 601
Bse1I	ACTGG	2 cut(s)	230, 623
Bse21I	CCTNAGG	1 cut(s)	579
BseBI	CCWGG	4 cut(s)	127, 135, 281, 379
BseDI	CCNNGG	2 cut(s)	133, 279
BseLI	CCNNNNNNNGG	3 cut(s)	201, 447, 601
BseMII	CTCAG	3 cut(s)	348, 411, 593
BseNI	ACTGG	2 cut(s)	230, 623
BseRI	GAGGAG	1 cut(s)	540
BseXI	GCAGC	1 cut(s)	592
Bsh1236I	CGCG	1 cut(s)	453
BshFI	GGCC	2 cut(s)	125, 659
BshNI	GGYRCC	1 cut(s)	621
BsiSI	CCGG	2 cut(s)	441, 656
BslFI	GGGAC	2 cut(s)	48, 115
BslI	CCNNNNNNNGG	3 cut(s)	201, 447, 601
BsmAI	GTCTC	2 cut(s)	376, 400
BsmFI	GGGAC	2 cut(s)	48, 115
BsmI	GAATGC	2 cut(s)	484, 668
BsnI	GGCC	2 cut(s)	125, 659
Bso31I	GGTCTC	1 cut(s)	376
Bsp1286I	GDGCHC	1 cut(s)	573
Bsp143I	GATC	3 cut(s)	97, 353, 484
BspACI	CCGC	1 cut(s)	537
BspANI	GGCC	2 cut(s)	125, 659
BspCNI	CTCAG	3 cut(s)	349, 410, 592
BspFNI	CGCG	1 cut(s)	453
BspLI	GGNNCC	5 cut(s)	57, 131, 315, 439, 623
BspPI	GGATC	1 cut(s)	92
BspT107I	GGYRCC	1 cut(s)	621
BspTNI	GGTCTC	1 cut(s)	376
BsrI	ACTGG	2 cut(s)	230, 623
BssECI	CCNNGG	2 cut(s)	133, 279
BssMI	GATC	3 cut(s)	97, 353, 484
Bst2UI	CCWGG	4 cut(s)	127, 135, 281, 379
Bst4CI	ACNGT	1 cut(s)	29
BstC8I	GCNNGC	5 cut(s)	72, 363, 468, 650, 666
BstDEI	CTNAG	6 cut(s)	219, 348, 357, 397, 526, 579
BstFNI	CGCG	1 cut(s)	453
BstH2I	RGCGCY	1 cut(s)	287
BstHHI	GCGC	2 cut(s)	286, 453
BstKTI	GATC	3 cut(s)	100, 356, 487
BstMAI	GTCTC	2 cut(s)	376, 400
BstMBI	GATC	3 cut(s)	97, 353, 484
BstMWI	GCNNNNNNNGC	4 cut(s)	290, 358, 367, 665
BstNI	CCWGG	4 cut(s)	127, 135, 281, 379
BstSCI	CCNGG	5 cut(s)	125, 133, 279, 377, 654
BstUI	CGCG	1 cut(s)	453
BstV1I	GCAGC	1 cut(s)	592
Bsu36I	CCTNAGG	1 cut(s)	579
BsuRI	GGCC	2 cut(s)	125, 659
BtgZI	GCGATG	1 cut(s)	468
Cac8I	GCNNGC	5 cut(s)	72, 363, 468, 650, 666
CfoI	GCGC	2 cut(s)	286, 453
Cfr13I	GGNCC	3 cut(s)	129, 502, 592
CseI	GACGC	1 cut(s)	359
CviAII	CATG	3 cut(s)	111, 224, 310
DdeI	CTNAG	6 cut(s)	219, 348, 357, 397, 526, 579
DpnI	GATC	3 cut(s)	99, 355, 486
DpnII	GATC	3 cut(s)	97, 353, 484
EaeI	YGGCCR	1 cut(s)	123
Eco24I	GRGCYC	1 cut(s)	573
Eco31I	GGTCTC	1 cut(s)	376
Eco47I	GGWCC	3 cut(s)	129, 502, 592
Eco57I	CTGAAG	1 cut(s)	527
Eco81I	CCTNAGG	1 cut(s)	579
EcoO109I	RGGNCCY	1 cut(s)	129
EcoRII	CCWGG	4 cut(s)	125, 133, 279, 377
EcoT38I	GRGCYC	1 cut(s)	573
FaeI	CATG	3 cut(s)	114, 227, 313
FaiI	YATR	9 cut(s)	50, 112, 191, 225, 243, 251, 311, 326, 498
FaqI	GGGAC	2 cut(s)	48, 115
FatI	CATG	3 cut(s)	110, 223, 309
Fnu4HI	GCNGC	1 cut(s)	606
FriOI	GRGCYC	1 cut(s)	573
Fsp4HI	GCNGC	1 cut(s)	606
FspBI	CTAG	3 cut(s)	60, 287, 320
GlaI	GCGC	2 cut(s)	285, 452
GluI	GCNGC	1 cut(s)	606
HaeII	RGCGCY	1 cut(s)	287
HaeIII	GGCC	2 cut(s)	125, 659
HapII	CCGG	2 cut(s)	441, 656
HgaI	GACGC	1 cut(s)	359
HhaI	GCGC	2 cut(s)	286, 453
Hin1II	CATG	3 cut(s)	114, 227, 313
Hin6I	GCGC	2 cut(s)	284, 451
HinP1I	GCGC	2 cut(s)	284, 451
HindIII	AAGCTT	1 cut(s)	72
HinfI	GANTC	5 cut(s)	35, 152, 205, 275, 295
HpaII	CCGG	2 cut(s)	441, 656
HphI	GGTGA	1 cut(s)	427
Hpy166II	GTNNAC	2 cut(s)	502, 532
Hpy188I	TCNGA	5 cut(s)	166, 178, 358, 400, 674
Hpy188III	TCNNGA	3 cut(s)	299, 581, 590
Hpy8I	GTNNAC	2 cut(s)	502, 532
Hpy99I	CGWCG	1 cut(s)	375
HpyAV	CCTTC	3 cut(s)	438, 502, 555
HpyCH4III	ACNGT	1 cut(s)	29
HpyCH4V	TGCA	6 cut(s)	4, 70, 80, 365, 470, 482
HpyF10VI	GCNNNNNNNGC	4 cut(s)	290, 358, 367, 665
HpyF3I	CTNAG	6 cut(s)	219, 348, 357, 397, 526, 579
Hsp92II	CATG	3 cut(s)	114, 227, 313
HspAI	GCGC	2 cut(s)	284, 451
Kzo9I	GATC	3 cut(s)	97, 353, 484
LmnI	GCTCC	2 cut(s)	55, 583
Lsp1109I	GCAGC	1 cut(s)	592
MaeI	CTAG	3 cut(s)	60, 287, 320
MaeIII	GTNAC	1 cut(s)	415
MalI	GATC	3 cut(s)	99, 355, 486
MboI	GATC	3 cut(s)	97, 353, 484
MboII	GAAGA	1 cut(s)	9
MhlI	GDGCHC	1 cut(s)	573
MlsI	TGGCCA	1 cut(s)	125
MluCI	AATT	3 cut(s)	12, 196, 461
MluNI	TGGCCA	1 cut(s)	125
MlyI	GAGTC	2 cut(s)	146, 214
MmeI	TCCRAC	1 cut(s)	33
MnlI	CCTC	6 cut(s)	111, 195, 247, 421, 561, 588
Mox20I	TGGCCA	1 cut(s)	125
MroXI	GAANNNNTTC	1 cut(s)	16
MscI	TGGCCA	1 cut(s)	125
MseI	TTAA	1 cut(s)	459
MslI	CAYNNNNRTG	2 cut(s)	85, 109
Msp20I	TGGCCA	1 cut(s)	125
MspI	CCGG	2 cut(s)	441, 656
MspR9I	CCNGG	5 cut(s)	127, 135, 281, 379, 656
Mva1269I	GAATGC	2 cut(s)	484, 668
MvaI	CCWGG	4 cut(s)	127, 135, 281, 379
MvnI	CGCG	1 cut(s)	453
MwoI	GCNNNNNNNGC	4 cut(s)	290, 358, 367, 665
NciI	CCSGG	1 cut(s)	656
NdeII	GATC	3 cut(s)	97, 353, 484
NlaIII	CATG	3 cut(s)	114, 227, 313
NlaIV	GGNNCC	5 cut(s)	57, 131, 315, 439, 623
NmuCI	GTSAC	1 cut(s)	415
PctI	GAATGC	2 cut(s)	484, 668
PdmI	GAANNNNTTC	1 cut(s)	16
PfeI	GAWTC	3 cut(s)	35, 275, 295
PkrI	GCNGC	1 cut(s)	607
PleI	GAGTC	2 cut(s)	146, 213
PpsI	GAGTC	2 cut(s)	146, 213
PpuMI	RGGWCCY	1 cut(s)	129
Psp5II	RGGWCCY	1 cut(s)	129
Psp6I	CCWGG	4 cut(s)	125, 133, 279, 377
PspGI	CCWGG	4 cut(s)	125, 133, 279, 377
PspN4I	GGNNCC	5 cut(s)	57, 131, 315, 439, 623
PspPI	GGNCC	3 cut(s)	129, 502, 592
PspPPI	RGGWCCY	1 cut(s)	129
RseI	CAYNNNNRTG	2 cut(s)	85, 109
SaqAI	TTAA	1 cut(s)	459
SatI	GCNGC	1 cut(s)	606
Sau3AI	GATC	3 cut(s)	97, 353, 484
Sau96I	GGNCC	3 cut(s)	129, 502, 592
SchI	GAGTC	2 cut(s)	146, 214
ScrFI	CCNGG	5 cut(s)	127, 135, 281, 379, 656
SduI	GDGCHC	1 cut(s)	573
SetI	ASST	7 cut(s)	76, 131, 363, 449, 507, 527, 588
SinI	GGWCC	3 cut(s)	129, 502, 592
SmiMI	CAYNNNNRTG	2 cut(s)	85, 109
Sse9I	AATT	3 cut(s)	12, 196, 461
SsiI	CCGC	1 cut(s)	537
SspMI	CTAG	3 cut(s)	60, 287, 320
StyD4I	CCNGG	5 cut(s)	125, 133, 279, 377, 654
TaaI	ACNGT	1 cut(s)	29
TaqI	TCGA	3 cut(s)	373, 405, 490
TaqII	GACCGA	1 cut(s)	609
TasI	AATT	3 cut(s)	12, 196, 461
TfiI	GAWTC	3 cut(s)	35, 275, 295
Tru1I	TTAA	1 cut(s)	459
Tru9I	TTAA	1 cut(s)	459
TseFI	GTSAC	1 cut(s)	415
TseI	GCWGC	1 cut(s)	605
Tsp45I	GTSAC	1 cut(s)	415
TspDTI	ATGAA	2 cut(s)	99, 240
VpaK11BI	GGWCC	3 cut(s)	129, 502, 592
XapI	RAATTY	1 cut(s)	12
XcmI	CCANNNNNNNNNTGG	1 cut(s)	28
XmnI	GAANNNNTTC	1 cut(s)	16
XspI	CTAG	3 cut(s)	60, 287, 320

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.