pycom07g18730

Telomere repeat-binding protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
Physical Location & Seq
Forward (+)
21139254 .. 21140478
1225 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g18730.3

Sequence Viewer

Length: 1035 bp
ATGGTGTTGAAGAAGAGGCTCGATTTTGGATTTAATGGCTTCCAGGTCCCTGCTATACCTAGAGCTCCCAGATCAGCTAGGAGGGGCCCACATAGGAAGTCGGTTGAGGATGGCCAATTCTGTGCTTTTGAATTATTGGCATCTTTAGCTGGAAAGTTATTGCAGGAGAGTGAAAGTTCTGCCTCCAGTAATGCTTCTGATGGAAATTTTCAGCCTGCCTTTGGCATAGACGTTAAGCAGGAAAGACAAGATGAACATAAACCTCTGAAAGAAGAGTGCCCTGATCAGGGAAGCTCCGAAGAAAGCGTTTCTTTAGGGCTGACATCGCAAAACGTCGGTCAGAAGGGCATTCTAAAAGAAATTCTGTGTGCCAACAGTGATACTGCTTTGGAACGCACTTCAGTTATTACAAGTTCAGACAGCTCTGCAAAAGCTGGGCGCCGGGCAAAGTCTGTAATTTCCAGTAGCAGGCCCACATTTCAAAATTATTCTGGTAAGGTAGAGGGGGGATCCCCGGGTATTGTGGAGTCCTGTTATGGTAATGTAGCAAATGGAATTGAAGTACAGGAAGATAGTAAGCTGTTAGAAACTGGAGCTTTGAAGATTGCTAACCCATGCAGTTCCAAGGATCCAACTGAACTGCATGCAAAATATCCTGCAATGCTCAATGGAGACAGCAATGTCAAATTGTCATTGTTCAGGGATCCTGTTCCTAATGCTTCTTTTTCTAGGCATAGGAATGATATTGAATTAGGTAGCAGAGATGATGACGAAAACTTTACTAGGTGCATTAAACCTAGCAACAGGGTGAAGGTCTTCAGGCCTCCACCACGTGTTGGAGACCGAAGAATAAGGAAGTTACTGACATCCAAGTACTGGAAAGCGGCTCCAAAGTTGAGGGAATGTGAGCACTATAGATATGATGGGGGAGTAAAAACTATTTATCACAAAAGGAAAACCTTTTACAACCATGAAAGATCGATCAACGTGACACTCTTTATAAGAGGAGGAAACTGGTTGACCGGAGTTCGGTAG

Protein Analysis

345

Amino Acids

38.11

Weight (kDa)

9.41

Isoelectric Point (pI)

49.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1001
AasI GACNNNNNNGTC 1 cut(s) 680
AccB1I GGYRCC 1 cut(s) 438
AccB7I CCANNNNNTGG 2 cut(s) 836, 876
AciI CCGC 1 cut(s) 884
AclWI GGATC 6 cut(s) 504, 517, 623, 636, 698, 711
AcoI YGGCCR 1 cut(s) 112
AcsI RAATTY 2 cut(s) 205, 360
AcuI CTGAAG 2 cut(s) 384, 802
AcvI CACGTG 1 cut(s) 833
AcyI GRCGYC 1 cut(s) 439
AdeI CACNNNGTG 1 cut(s) 833
AfaI GTAC 2 cut(s) 564, 875
AfiI CCNNNNNNNGG 7 cut(s) 221, 286, 287, 468, 836, 876, 1029
AflIII ACRYGT 1 cut(s) 832
AgsI TTSAA 6 cut(s) 10, 131, 482, 560, 601, 749
AjnI CCWGG 1 cut(s) 42
AluBI AGCT 8 cut(s) 65, 77, 149, 294, 423, 434, 580, 596
AluI AGCT 8 cut(s) 65, 77, 149, 294, 423, 434, 580, 596
Alw21I GWGCWC 2 cut(s) 67, 912
Alw26I GTCTC 2 cut(s) 666, 834
AlwI GGATC 6 cut(s) 504, 517, 623, 636, 698, 711
Ama87I CYCGRG 1 cut(s) 514
AoxI GGCC 4 cut(s) 85, 112, 470, 821
ApaI GGGCCC 1 cut(s) 89
ApoI RAATTY 2 cut(s) 205, 360
ArsI GACNNNNNNTTYG 2 cut(s) 322, 354
Asp700I GAANNNNTTC 1 cut(s) 815
AspLEI GCGC 1 cut(s) 441
AspS9I GGNCC 4 cut(s) 46, 85, 86, 471
AsuC2I CCSGG 3 cut(s) 443, 515, 516
AsuHPI GGTGA 1 cut(s) 820
AvaI CYCGRG 1 cut(s) 514
AvaII GGWCC 1 cut(s) 46
BaeGI GKGCMC 2 cut(s) 89, 281
BalI TGGCCA 1 cut(s) 114
BamHI GGATCC 3 cut(s) 509, 628, 703
BanI GGYRCC 1 cut(s) 438
BanII GRGCYC 2 cut(s) 67, 89
BbrPI CACGTG 1 cut(s) 833
BbsI GAAGAC 1 cut(s) 808
Bbv12I GWGCWC 2 cut(s) 67, 912
BccI CCATC 3 cut(s) 104, 194, 917
BciT130I CCWGG 1 cut(s) 44
BclI TGATCA 1 cut(s) 283
BcnI CCSGG 3 cut(s) 443, 515, 516
BcoDI GTCTC 2 cut(s) 666, 834
BfaI CTAG 5 cut(s) 60, 78, 729, 783, 798
BfmI CTRYAG 1 cut(s) 913
BfoI RGCGCY 1 cut(s) 442
BisI GCNGC 1 cut(s) 885
BlsI GCNGC 1 cut(s) 886
BmcAI AGTACT 1 cut(s) 875
Bme1390I CCNGG 4 cut(s) 44, 443, 515, 516
Bme18I GGWCC 1 cut(s) 46
BmeT110I CYCGRG 1 cut(s) 514
BmgT120I GGNCC 4 cut(s) 46, 85, 86, 471
BmiI GGNNCC 8 cut(s) 48, 86, 87, 440, 511, 630, 705, 888
BmrFI CCNGG 4 cut(s) 44, 443, 515, 516
BmsI GCATC 1 cut(s) 149
BpiI GAAGAC 1 cut(s) 808
BpmI CTGGAG 2 cut(s) 169, 612
BpuMI CCSGG 3 cut(s) 443, 515, 516
Bsa29I ATCGAT 1 cut(s) 980
BsaAI YACGTR 1 cut(s) 833
BsaHI GRCGYC 1 cut(s) 439
BsaI GGTCTC 1 cut(s) 834
BsaJI CCNNGG 3 cut(s) 513, 514, 624
BsaWI WCCGGW 1 cut(s) 1022
Bsc4I CCNNNNNNNGG 7 cut(s) 221, 286, 287, 468, 836, 876, 1029
Bse1I ACTGG 5 cut(s) 186, 462, 595, 881, 1019
Bse3DI GCAATG 2 cut(s) 666, 685
BseBI CCWGG 1 cut(s) 44
BseCI ATCGAT 1 cut(s) 980
BseDI CCNNGG 3 cut(s) 513, 514, 624
BseGI GGATG 2 cut(s) 115, 866
BseLI CCNNNNNNNGG 7 cut(s) 221, 286, 287, 468, 836, 876, 1029
BseMI GCAATG 2 cut(s) 666, 685
BseNI ACTGG 5 cut(s) 186, 462, 595, 881, 1019
BseRI GAGGAG 1 cut(s) 1020
BseSI GKGCMC 2 cut(s) 89, 281
BseYI CCCAGC 1 cut(s) 434
BshFI GGCC 4 cut(s) 87, 114, 472, 823
BshNI GGYRCC 1 cut(s) 438
BshVI ATCGAT 1 cut(s) 980
BsiHKAI GWGCWC 2 cut(s) 67, 912
BsiHKCI CYCGRG 1 cut(s) 514
BsiSI CCGG 3 cut(s) 442, 515, 1023
BslFI GGGAC 1 cut(s) 32
BslI CCNNNNNNNGG 7 cut(s) 221, 286, 287, 468, 836, 876, 1029
BsmAI GTCTC 2 cut(s) 666, 834
BsmFI GGGAC 1 cut(s) 32
BsmI GAATGC 1 cut(s) 348
BsnI GGCC 4 cut(s) 87, 114, 472, 823
Bso31I GGTCTC 1 cut(s) 834
BsoBI CYCGRG 1 cut(s) 514
Bsp120I GGGCCC 1 cut(s) 85
Bsp1286I GDGCHC 4 cut(s) 67, 89, 281, 912
Bsp143I GATC 7 cut(s) 71, 283, 509, 628, 703, 977, 981
BspACI CCGC 1 cut(s) 884
BspANI GGCC 4 cut(s) 87, 114, 472, 823
BspDI ATCGAT 1 cut(s) 980
BspLI GGNNCC 8 cut(s) 48, 86, 87, 440, 511, 630, 705, 888
BspPI GGATC 6 cut(s) 504, 517, 623, 636, 698, 711
BspT107I GGYRCC 1 cut(s) 438
BspTNI GGTCTC 1 cut(s) 834
BsrDI GCAATG 2 cut(s) 666, 685
BsrI ACTGG 5 cut(s) 186, 462, 595, 881, 1019
BssECI CCNNGG 3 cut(s) 513, 514, 624
BssMI GATC 7 cut(s) 71, 283, 509, 628, 703, 977, 981
BssNI GRCGYC 1 cut(s) 439
BssT1I CCWWGG 1 cut(s) 624
Bst2UI CCWGG 1 cut(s) 44
Bst4CI ACNGT 1 cut(s) 377
Bst6I CTCTTC 2 cut(s) 8, 267
BstACI GRCGYC 1 cut(s) 439
BstBAI YACGTR 1 cut(s) 833
BstC8I GCNNGC 3 cut(s) 216, 470, 645
BstF5I GGATG 2 cut(s) 115, 866
BstH2I RGCGCY 1 cut(s) 442
BstHHI GCGC 1 cut(s) 441
BstKTI GATC 7 cut(s) 74, 286, 512, 631, 706, 980, 984
BstMAI GTCTC 2 cut(s) 666, 834
BstMBI GATC 7 cut(s) 71, 283, 509, 628, 703, 977, 981
BstMWI GCNNNNNNNGC 2 cut(s) 146, 325
BstNI CCWGG 1 cut(s) 44
BstNSI RCATGY 1 cut(s) 647
BstSCI CCNGG 4 cut(s) 42, 441, 513, 514
BstSFI CTRYAG 1 cut(s) 913
BstSLI GKGCMC 2 cut(s) 89, 281
BstV2I GAAGAC 1 cut(s) 808
BstX2I RGATCY 3 cut(s) 509, 628, 703
BstYI RGATCY 3 cut(s) 509, 628, 703
Bsu15I ATCGAT 1 cut(s) 980
BsuRI GGCC 4 cut(s) 87, 114, 472, 823
BsuTUI ATCGAT 1 cut(s) 980
BtgZI GCGATG 1 cut(s) 309
BtsCI GGATG 2 cut(s) 115, 866
BtsIMutI CAGTG 1 cut(s) 382
Cac8I GCNNGC 3 cut(s) 216, 470, 645
CfoI GCGC 1 cut(s) 441
Cfr13I GGNCC 4 cut(s) 46, 85, 86, 471
Cfr9I CCCGGG 1 cut(s) 514
ClaI ATCGAT 1 cut(s) 980
Csp6I GTAC 2 cut(s) 563, 874
CviAII CATG 3 cut(s) 615, 644, 971
CviQI GTAC 2 cut(s) 563, 874
DinI GGCGCC 1 cut(s) 440
DpnI GATC 7 cut(s) 73, 285, 511, 630, 705, 979, 983
DpnII GATC 7 cut(s) 71, 283, 509, 628, 703, 977, 981
DraIII CACNNNGTG 1 cut(s) 833
DrdI GACNNNNNNGTC 1 cut(s) 680
DseDI GACNNNNNNGTC 1 cut(s) 680
EaeI YGGCCR 1 cut(s) 112
Eam1104I CTCTTC 2 cut(s) 8, 267
EarI CTCTTC 2 cut(s) 8, 267
Ecl136II GAGCTC 1 cut(s) 65
Eco130I CCWWGG 1 cut(s) 624
Eco147I AGGCCT 1 cut(s) 823
Eco24I GRGCYC 2 cut(s) 67, 89
Eco31I GGTCTC 1 cut(s) 834
Eco47I GGWCC 1 cut(s) 46
Eco53kI GAGCTC 1 cut(s) 65
Eco57I CTGAAG 2 cut(s) 384, 802
Eco72I CACGTG 1 cut(s) 833
Eco88I CYCGRG 1 cut(s) 514
EcoICRI GAGCTC 1 cut(s) 65
EcoO109I RGGNCCY 2 cut(s) 46, 85
EcoRII CCWGG 1 cut(s) 42
EcoT14I CCWWGG 1 cut(s) 624
EcoT38I GRGCYC 2 cut(s) 67, 89
EgeI GGCGCC 1 cut(s) 440
EheI GGCGCC 1 cut(s) 440
ErhI CCWWGG 1 cut(s) 624
FaeI CATG 3 cut(s) 618, 647, 974
FalI AAGNNNNNCTT 2 cut(s) 295, 327
FaqI GGGAC 1 cut(s) 32
FatI CATG 3 cut(s) 614, 643, 970
FbaI TGATCA 1 cut(s) 283
Fnu4HI GCNGC 1 cut(s) 885
FokI GGATG 2 cut(s) 122, 853
FriOI GRGCYC 2 cut(s) 67, 89
Fsp4HI GCNGC 1 cut(s) 885
FspBI CTAG 5 cut(s) 60, 78, 729, 783, 798
GlaI GCGC 1 cut(s) 440
GluI GCNGC 1 cut(s) 885
GsaI CCCAGC 1 cut(s) 438
GsuI CTGGAG 2 cut(s) 169, 612
HaeII RGCGCY 1 cut(s) 442
HaeIII GGCC 4 cut(s) 87, 114, 472, 823
HapII CCGG 3 cut(s) 442, 515, 1023
HhaI GCGC 1 cut(s) 441
Hin1I GRCGYC 1 cut(s) 439
Hin1II CATG 3 cut(s) 618, 647, 974
Hin6I GCGC 1 cut(s) 439
HinP1I GCGC 1 cut(s) 439
HincII GTYRAC 1 cut(s) 1020
HindII GTYRAC 1 cut(s) 1020
HinfI GANTC 1 cut(s) 527
HpaII CCGG 3 cut(s) 442, 515, 1023
HphI GGTGA 1 cut(s) 820
Hpy166II GTNNAC 1 cut(s) 1020
Hpy188I TCNGA 5 cut(s) 199, 267, 298, 342, 418
Hpy8I GTNNAC 1 cut(s) 1020
Hpy99I CGWCG 1 cut(s) 338
HpyAV CCTTC 2 cut(s) 337, 805
HpyCH4III ACNGT 1 cut(s) 377
HpyCH4IV ACGT 4 cut(s) 231, 333, 832, 987
HpyCH4V TGCA 7 cut(s) 163, 428, 618, 643, 647, 659, 789
HpyF10VI GCNNNNNNNGC 2 cut(s) 146, 325
HpySE526I ACGT 4 cut(s) 231, 333, 832, 987
Hsp92I GRCGYC 1 cut(s) 439
Hsp92II CATG 3 cut(s) 618, 647, 974
HspAI GCGC 1 cut(s) 439
KasI GGCGCC 1 cut(s) 438
Ksp22I TGATCA 1 cut(s) 283
Kzo9I GATC 7 cut(s) 71, 283, 509, 628, 703, 977, 981
LmnI GCTCC 4 cut(s) 70, 299, 593, 892
LweI GCATC 1 cut(s) 149
MaeI CTAG 5 cut(s) 60, 78, 729, 783, 798
MaeII ACGT 4 cut(s) 231, 333, 832, 987
MaeIII GTNAC 2 cut(s) 858, 988
MalI GATC 7 cut(s) 73, 285, 511, 630, 705, 979, 983
MboI GATC 7 cut(s) 71, 283, 509, 628, 703, 977, 981
MboII GAAGA 8 cut(s) 22, 25, 284, 311, 581, 613, 808, 858
MflI RGATCY 3 cut(s) 509, 628, 703
MhlI GDGCHC 4 cut(s) 67, 89, 281, 912
MlsI TGGCCA 1 cut(s) 114
MluCI AATT 9 cut(s) 116, 131, 205, 360, 456, 484, 555, 686, 749
MluNI TGGCCA 1 cut(s) 114
Mly113I GGCGCC 1 cut(s) 439
MlyI GAGTC 1 cut(s) 536
MmeI TCCRAC 2 cut(s) 656, 817
Mox20I TGGCCA 1 cut(s) 114
MroXI GAANNNNTTC 1 cut(s) 815
MscI TGGCCA 1 cut(s) 114
MseI TTAA 3 cut(s) 33, 234, 792
MslI CAYNNNNRTG 1 cut(s) 738
Msp20I TGGCCA 1 cut(s) 114
MspI CCGG 3 cut(s) 442, 515, 1023
MspR9I CCNGG 4 cut(s) 44, 443, 515, 516
Mva1269I GAATGC 1 cut(s) 348
MvaI CCWGG 1 cut(s) 44
MwoI GCNNNNNNNGC 2 cut(s) 146, 325
NarI GGCGCC 1 cut(s) 439
NciI CCSGG 3 cut(s) 443, 515, 516
NdeII GATC 7 cut(s) 71, 283, 509, 628, 703, 977, 981
NlaIII CATG 3 cut(s) 618, 647, 974
NlaIV GGNNCC 8 cut(s) 48, 86, 87, 440, 511, 630, 705, 888
NmuCI GTSAC 1 cut(s) 988
NspI RCATGY 1 cut(s) 647
PaeI GCATGC 1 cut(s) 647
PceI AGGCCT 1 cut(s) 823
PctI GAATGC 1 cut(s) 348
PdmI GAANNNNTTC 1 cut(s) 815
PflMI CCANNNNNTGG 2 cut(s) 836, 876
PkrI GCNGC 1 cut(s) 886
PleI GAGTC 1 cut(s) 535
PluTI GGCGCC 1 cut(s) 442
PmaCI CACGTG 1 cut(s) 833
PmlI CACGTG 1 cut(s) 833
PpsI GAGTC 1 cut(s) 535
Ppu21I YACGTR 1 cut(s) 833
PpuMI RGGWCCY 1 cut(s) 46
PsiI TTATAA 1 cut(s) 1001
Psp124BI GAGCTC 1 cut(s) 67
Psp5II RGGWCCY 1 cut(s) 46
Psp6I CCWGG 1 cut(s) 42
PspCI CACGTG 1 cut(s) 833
PspFI CCCAGC 1 cut(s) 434
PspGI CCWGG 1 cut(s) 42
PspN4I GGNNCC 8 cut(s) 48, 86, 87, 440, 511, 630, 705, 888
PspOMI GGGCCC 1 cut(s) 85
PspPI GGNCC 4 cut(s) 46, 85, 86, 471
PspPPI RGGWCCY 1 cut(s) 46
PsuI RGATCY 3 cut(s) 509, 628, 703
RsaI GTAC 2 cut(s) 564, 875
RsaNI GTAC 2 cut(s) 563, 874
RseI CAYNNNNRTG 1 cut(s) 738
SacI GAGCTC 1 cut(s) 67
SaqAI TTAA 3 cut(s) 33, 234, 792
SatI GCNGC 1 cut(s) 885
Sau3AI GATC 7 cut(s) 71, 283, 509, 628, 703, 977, 981
Sau96I GGNCC 4 cut(s) 46, 85, 86, 471
ScaI AGTACT 1 cut(s) 875
SchI GAGTC 1 cut(s) 536
ScrFI CCNGG 4 cut(s) 44, 443, 515, 516
SduI GDGCHC 4 cut(s) 67, 89, 281, 912
SfaNI GCATC 1 cut(s) 149
SfcI CTRYAG 1 cut(s) 913
SfoI GGCGCC 1 cut(s) 440
SinI GGWCC 1 cut(s) 46
SmaI CCCGGG 1 cut(s) 516
SmiMI CAYNNNNRTG 1 cut(s) 738
SphI GCATGC 1 cut(s) 647
Sse9I AATT 9 cut(s) 116, 131, 205, 360, 456, 484, 555, 686, 749
SseBI AGGCCT 1 cut(s) 823
SsiI CCGC 1 cut(s) 884
SspDI GGCGCC 1 cut(s) 438
SspMI CTAG 5 cut(s) 60, 78, 729, 783, 798
SstI GAGCTC 1 cut(s) 67
StuI AGGCCT 1 cut(s) 823
StyD4I CCNGG 4 cut(s) 42, 441, 513, 514
StyI CCWWGG 1 cut(s) 624
TaaI ACNGT 1 cut(s) 377
TaiI ACGT 4 cut(s) 234, 336, 835, 990
TaqI TCGA 2 cut(s) 21, 980
TaqII GACCGA 2 cut(s) 326, 858
TasI AATT 9 cut(s) 116, 131, 205, 360, 456, 484, 555, 686, 749
TatI WGTACW 2 cut(s) 562, 873
TauI GCSGC 1 cut(s) 887
Tru1I TTAA 3 cut(s) 33, 234, 792
Tru9I TTAA 3 cut(s) 33, 234, 792
TscAI CASTG 1 cut(s) 382
TseFI GTSAC 1 cut(s) 988
Tsp45I GTSAC 1 cut(s) 988
TspDTI ATGAA 2 cut(s) 267, 987
TspMI CCCGGG 1 cut(s) 514
TspRI CASTG 1 cut(s) 382
Van91I CCANNNNNTGG 2 cut(s) 836, 876
VpaK11BI GGWCC 1 cut(s) 46
XapI RAATTY 2 cut(s) 205, 360
XceI RCATGY 1 cut(s) 647
XmaI CCCGGG 1 cut(s) 514
XmnI GAANNNNTTC 1 cut(s) 815
XspI CTAG 5 cut(s) 60, 78, 729, 783, 798
ZrmI AGTACT 1 cut(s) 875
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.