Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8480775.1

Orthogroup ID

OG0004907

Physical Location & Seq

Genomic Coordinates Forward (+)

232 .. 1907

Gene Structure 1676 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8480775.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1260 bp

atggtgttgaagaagaggctagattttggatttaatggattccaggtccccaccatacctagagctcccagatcagctagaaggaggggcccacaaaagaagttagttgaggatggacaaatctgtgcgtttgaattactggcttctatagctggcaagctattgcaggagagtgaaagttcatccgcctctagtcatgcttctcaaggaaattctcagcctgcctttggtaaagatgttaagcaggaaatacaagatgaacacaaacctcctaaagatgaatgtctagatcatggctgctctgaagagagtgtttctctagagctgacctcaaaaagcattgatcagaagtgtactccaaaagaatttctgcatgctgagagtgatacggctttggaacatgcttcaattattacaaattccggcagctcagataaagttgcttgtcagacgaagtctgtaattcgcagtagcaagcccacacttcacaattattctggtaaattagggagaggttccccaggtattggggagtcctcttatggtaatttaggaattccaaaagacagtgagggattagaaactggaggttgtaatagggctaacacatgcagttccaaggatccaatggaattgcatgcagagtatcctgcaactgtcaatggagacaataatgacaaattgtcattgtacagggatcttattcctaatgcttctttttccaggcataggaatgatactgaattaggtattagagatgatgacgaaaacttttctaggtgcaataaactcagcactaaggtaaaggtctttaggcctccatcacgtattggagaccgaagattaaggaagttactgacatccaagtattggaaggtggctccaaaactgagtgaatgtgataacctcagatatgatggaggagtaaaacctacttatcacaagaggaaaatcttttacaatcgcgaacgatctcaacgtgacactctttgtaagaggaggaaaatggttgaacgaagctcagtagtgacttctgatggagggttcagcggtgaaagtgtttcttattcacctgagaagggcatgaatggagacaaaagtgttccagctgcaaatggggtgtcttcttcagtcataggccctcaagcttctctccactccaaggaatctcatgtgaaattcagaataaaatcctttaaggtaccggagctttttattgaggtgccagaaactgaaactgtcggttccttgaaggtataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000723 GO:0000781 GO:0000782 GO:0000783 GO:0000784 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003691 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008301 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016043 GO:0031627 GO:0031974 GO:0031981 GO:0032200 GO:0032991 GO:0032993 GO:0033993 GO:0034641 GO:0042162 GO:0042221 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0060249 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0097305 GO:0098687 GO:1901360 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

419

Amino Acids

46.17

Weight (kDa)

9.11

Isoelectric Point (pI)

49.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004907)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12560 AT3G12560 AT5G13820 AT5G13820
fragaria_vesca	FvH4_7g22710 FvH4_7g22710 FvH4_7g22710 FvH4_7g22710 FvH4_7g22710 FvH4_7g22710 FvH4_7g22710 FvH4_7g22710
malus_domestica	MD01G1135700.v1.1 MD07G1200400.v1.1
prunus_persica	Prupe.2G237100_v2.0.a1
pyrus_communis	pycom01g15650 pycom07g18730 pycom07g18740
rosa_chinensis	RchiOBHm_Chr1g0367801
rosa_laevigata	RLG00000027262
rosa_multiflora	Rmu_co8480775.1_g000001 Rmu_ssc0000395.1_g000024
rosa_roxburghii	Rroxscaffold_4G00289210
rosa_rugosa	Rorug01G0336700 Rorug01G0336800
rosa_samantha	Rh1AG343900 Rh1BG305800 Rh1CG321400 Rh1DG338000
rosa_wichuraiana	Rw1G030610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	1201
AccB1I	GGYRCC	2 cut(s)	1201, 1222
AccB7I	CCANNNNNTGG	2 cut(s)	527, 870
AccII	CGCG	1 cut(s)	966
AciI	CCGC	2 cut(s)	186, 1050
AclWI	GGATC	3 cut(s)	617, 630, 705
AcsI	RAATTY	5 cut(s)	211, 365, 418, 555, 1178
AcuI	CTGAAG	2 cut(s)	324, 1113
AfaI	GTAC	3 cut(s)	355, 692, 1203
AfiI	CCNNNNNNNGG	6 cut(s)	227, 527, 729, 870, 1079, 1162
AgsI	TTSAA	5 cut(s)	10, 134, 408, 1013, 1252
AhdI	GACNNNNNGTC	1 cut(s)	682
AjnI	CCWGG	3 cut(s)	42, 520, 722
Alw21I	GWGCWC	1 cut(s)	67
Alw26I	GTCTC	3 cut(s)	660, 828, 1086
AlwI	GGATC	3 cut(s)	617, 630, 705
AlwNI	CAGNNNCTG	1 cut(s)	1232
AoxI	GGCC	3 cut(s)	88, 815, 1138
ApaI	GGGCCC	1 cut(s)	92
ApeKI	GCWGC	3 cut(s)	297, 426, 1109
ApoI	RAATTY	5 cut(s)	211, 365, 418, 555, 1178
ArsI	GACNNNNNNTTYG	2 cut(s)	1106, 1138
Asp718I	GGTACC	1 cut(s)	1201
AspS9I	GGNCC	4 cut(s)	46, 88, 89, 1139
AsuHPI	GGTGA	2 cut(s)	1062, 1064
AvaII	GGWCC	1 cut(s)	46
BaeGI	GKGCMC	1 cut(s)	92
BamHI	GGATCC	1 cut(s)	622
BanI	GGYRCC	2 cut(s)	1201, 1222
BanII	GRGCYC	2 cut(s)	67, 92
BbsI	GAAGAC	1 cut(s)	1116
Bbv12I	GWGCWC	1 cut(s)	67
BbvI	GCAGC	3 cut(s)	284, 438, 1096
BccI	CCATC	4 cut(s)	107, 829, 911, 1031
BceAI	ACGGC	1 cut(s)	405
BciT130I	CCWGG	3 cut(s)	44, 522, 724
BciVI	GTATCC	1 cut(s)	657
BclI	TGATCA	1 cut(s)	343
BcoDI	GTCTC	3 cut(s)	660, 828, 1086
BfaI	CTAG	7 cut(s)	20, 60, 78, 192, 287, 320, 777
BfmI	CTRYAG	1 cut(s)	147
BfuI	GTATCC	1 cut(s)	657
BisI	GCNGC	3 cut(s)	298, 427, 1110
BlsI	GCNGC	3 cut(s)	299, 428, 1111
Bme1390I	CCNGG	3 cut(s)	44, 522, 724
Bme18I	GGWCC	1 cut(s)	46
BmeRI	GACNNNNNGTC	1 cut(s)	682
BmgT120I	GGNCC	4 cut(s)	46, 88, 89, 1139
BmiI	GGNNCC	9 cut(s)	48, 89, 90, 517, 624, 882, 1203, 1224, 1246
BmrFI	CCNGG	3 cut(s)	44, 522, 724
BpiI	GAAGAC	1 cut(s)	1116
BplI	GAGNNNNNCTC	4 cut(s)	301, 333, 314, 346
BpmI	CTGGAG	1 cut(s)	606
BpuEI	CTTGAG	2 cut(s)	189, 1128
BsaAI	YACGTR	1 cut(s)	827
BsaI	GGTCTC	1 cut(s)	828
BsaJI	CCNNGG	3 cut(s)	520, 618, 1161
BsaWI	WCCGGW	1 cut(s)	1204
Bsc4I	CCNNNNNNNGG	6 cut(s)	227, 527, 729, 870, 1079, 1162
Bse1I	ACTGG	2 cut(s)	144, 589
BseBI	CCWGG	3 cut(s)	44, 522, 724
BseDI	CCNNGG	3 cut(s)	520, 618, 1161
BseGI	GGATG	3 cut(s)	118, 182, 860
BseLI	CCNNNNNNNGG	6 cut(s)	227, 527, 729, 870, 1079, 1162
BseMII	CTCAG	8 cut(s)	230, 369, 444, 805, 881, 922, 1035, 1065
BseNI	ACTGG	2 cut(s)	144, 589
BseRI	GAGGAG	2 cut(s)	936, 1012
BseSI	GKGCMC	1 cut(s)	92
BseXI	GCAGC	3 cut(s)	284, 438, 1096
Bsh1236I	CGCG	1 cut(s)	966
BshFI	GGCC	3 cut(s)	90, 817, 1140
BshNI	GGYRCC	2 cut(s)	1201, 1222
BsiHKAI	GWGCWC	1 cut(s)	67
BsiSI	CCGG	2 cut(s)	423, 1205
BslFI	GGGAC	1 cut(s)	32
BslI	CCNNNNNNNGG	6 cut(s)	227, 527, 729, 870, 1079, 1162
BsmAI	GTCTC	3 cut(s)	660, 828, 1086
BsmFI	GGGAC	1 cut(s)	32
BsnI	GGCC	3 cut(s)	90, 817, 1140
Bso31I	GGTCTC	1 cut(s)	828
Bsp120I	GGGCCC	1 cut(s)	88
Bsp1286I	GDGCHC	2 cut(s)	67, 92
Bsp1407I	TGTACA	1 cut(s)	690
Bsp143I	GATC	6 cut(s)	71, 289, 343, 622, 697, 971
Bsp68I	TCGCGA	1 cut(s)	966
BspACI	CCGC	2 cut(s)	186, 1050
BspANI	GGCC	3 cut(s)	90, 817, 1140
BspCNI	CTCAG	8 cut(s)	229, 370, 443, 804, 882, 921, 1034, 1066
BspFNI	CGCG	1 cut(s)	966
BspLI	GGNNCC	9 cut(s)	48, 89, 90, 517, 624, 882, 1203, 1224, 1246
BspPI	GGATC	3 cut(s)	617, 630, 705
BspT107I	GGYRCC	2 cut(s)	1201, 1222
BspTNI	GGTCTC	1 cut(s)	828
BsrGI	TGTACA	1 cut(s)	690
BsrI	ACTGG	2 cut(s)	144, 589
BssECI	CCNNGG	3 cut(s)	520, 618, 1161
BssMI	GATC	6 cut(s)	71, 289, 343, 622, 697, 971
BssT1I	CCWWGG	2 cut(s)	618, 1161
Bst2UI	CCWGG	3 cut(s)	44, 522, 724
Bst4CI	ACNGT	3 cut(s)	569, 658, 1240
Bst6I	CTCTTC	2 cut(s)	8, 300
BstAUI	TGTACA	1 cut(s)	690
BstBAI	YACGTR	1 cut(s)	827
BstC8I	GCNNGC	6 cut(s)	154, 158, 222, 375, 476, 639
BstDEI	CTNAG	9 cut(s)	216, 378, 430, 791, 798, 890, 908, 1021, 1074
BstF5I	GGATG	3 cut(s)	118, 182, 860
BstFNI	CGCG	1 cut(s)	966
BstKTI	GATC	6 cut(s)	74, 292, 346, 625, 700, 974
BstMAI	GTCTC	3 cut(s)	660, 828, 1086
BstMBI	GATC	6 cut(s)	71, 289, 343, 622, 697, 971
BstMWI	GCNNNNNNNGC	1 cut(s)	149
BstNI	CCWGG	3 cut(s)	44, 522, 724
BstNSI	RCATGY	4 cut(s)	377, 404, 612, 641
BstSCI	CCNGG	3 cut(s)	42, 520, 722
BstSFI	CTRYAG	1 cut(s)	147
BstSLI	GKGCMC	1 cut(s)	92
BstUI	CGCG	1 cut(s)	966
BstV1I	GCAGC	3 cut(s)	284, 438, 1096
BstV2I	GAAGAC	1 cut(s)	1116
BstX2I	RGATCY	2 cut(s)	622, 697
BstYI	RGATCY	2 cut(s)	622, 697
BsuI	GTATCC	1 cut(s)	657
BsuRI	GGCC	3 cut(s)	90, 817, 1140
BtsCI	GGATG	3 cut(s)	118, 182, 860
BtsIMutI	CAGTG	1 cut(s)	574
BtuMI	TCGCGA	1 cut(s)	966
Cac8I	GCNNGC	6 cut(s)	154, 158, 222, 375, 476, 639
CaiI	CAGNNNCTG	1 cut(s)	1232
Cfr13I	GGNCC	4 cut(s)	46, 88, 89, 1139
Csp6I	GTAC	3 cut(s)	354, 691, 1202
CviAII	CATG	8 cut(s)	197, 293, 374, 401, 609, 638, 1084, 1172
CviQI	GTAC	3 cut(s)	354, 691, 1202
DdeI	CTNAG	9 cut(s)	216, 378, 430, 791, 798, 890, 908, 1021, 1074
DpnI	GATC	6 cut(s)	73, 291, 345, 624, 699, 973
DpnII	GATC	6 cut(s)	71, 289, 343, 622, 697, 971
DriI	GACNNNNNGTC	1 cut(s)	682
Eam1104I	CTCTTC	2 cut(s)	8, 300
Eam1105I	GACNNNNNGTC	1 cut(s)	682
EarI	CTCTTC	2 cut(s)	8, 300
EciI	GGCGGA	1 cut(s)	175
Ecl136II	GAGCTC	1 cut(s)	65
Eco130I	CCWWGG	2 cut(s)	618, 1161
Eco147I	AGGCCT	1 cut(s)	817
Eco24I	GRGCYC	2 cut(s)	67, 92
Eco31I	GGTCTC	1 cut(s)	828
Eco47I	GGWCC	1 cut(s)	46
Eco53kI	GAGCTC	1 cut(s)	65
Eco57I	CTGAAG	2 cut(s)	324, 1113
EcoICRI	GAGCTC	1 cut(s)	65
EcoO109I	RGGNCCY	3 cut(s)	46, 88, 1139
EcoRI	GAATTC	1 cut(s)	555
EcoRII	CCWGG	3 cut(s)	42, 520, 722
EcoT14I	CCWWGG	2 cut(s)	618, 1161
EcoT38I	GRGCYC	2 cut(s)	67, 92
ErhI	CCWWGG	2 cut(s)	618, 1161
FaeI	CATG	8 cut(s)	200, 296, 377, 404, 612, 641, 1087, 1175
FalI	AAGNNNNNCTT	2 cut(s)	1048, 1080
FaqI	GGGAC	1 cut(s)	32
FatI	CATG	8 cut(s)	196, 292, 373, 400, 608, 637, 1083, 1171
FbaI	TGATCA	1 cut(s)	343
Fnu4HI	GCNGC	3 cut(s)	298, 427, 1110
FokI	GGATG	3 cut(s)	125, 169, 847
FriOI	GRGCYC	2 cut(s)	67, 92
Fsp4HI	GCNGC	3 cut(s)	298, 427, 1110
FspBI	CTAG	7 cut(s)	20, 60, 78, 192, 287, 320, 777
GluI	GCNGC	3 cut(s)	298, 427, 1110
GsuI	CTGGAG	1 cut(s)	606
HaeIII	GGCC	3 cut(s)	90, 817, 1140
HapII	CCGG	2 cut(s)	423, 1205
Hin1II	CATG	8 cut(s)	200, 296, 377, 404, 612, 641, 1087, 1175
HindIII	AAGCTT	1 cut(s)	1146
HinfI	GANTC	3 cut(s)	39, 533, 1166
HpaII	CCGG	2 cut(s)	423, 1205
HphI	GGTGA	2 cut(s)	1062, 1064
Hpy166II	GTNNAC	1 cut(s)	354
Hpy188I	TCNGA	7 cut(s)	304, 348, 433, 450, 911, 1036, 1184
Hpy188III	TCNNGA	3 cut(s)	287, 320, 965
Hpy8I	GTNNAC	1 cut(s)	354
HpyAV	CCTTC	4 cut(s)	75, 868, 1072, 1246
HpyCH4III	ACNGT	3 cut(s)	569, 658, 1240
HpyCH4IV	ACGT	2 cut(s)	826, 979
HpyCH4V	TGCA	8 cut(s)	166, 373, 612, 637, 641, 653, 783, 1112
HpyF10VI	GCNNNNNNNGC	1 cut(s)	149
HpyF3I	CTNAG	9 cut(s)	216, 378, 430, 791, 798, 890, 908, 1021, 1074
HpySE526I	ACGT	2 cut(s)	826, 979
Hsp92II	CATG	8 cut(s)	200, 296, 377, 404, 612, 641, 1087, 1175
KpnI	GGTACC	1 cut(s)	1205
Ksp22I	TGATCA	1 cut(s)	343
Kzo9I	GATC	6 cut(s)	71, 289, 343, 622, 697, 971
LmnI	GCTCC	3 cut(s)	70, 886, 1207
Lsp1109I	GCAGC	3 cut(s)	284, 438, 1096
MaeI	CTAG	7 cut(s)	20, 60, 78, 192, 287, 320, 777
MaeII	ACGT	2 cut(s)	826, 979
MaeIII	GTNAC	3 cut(s)	852, 980, 1027
MalI	GATC	6 cut(s)	73, 291, 345, 624, 699, 973
MboI	GATC	6 cut(s)	71, 289, 343, 622, 697, 971
MboII	GAAGA	6 cut(s)	22, 25, 317, 852, 1116, 1119
MflI	RGATCY	2 cut(s)	622, 697
MhlI	GDGCHC	2 cut(s)	67, 92
MlyI	GAGTC	1 cut(s)	542
MseI	TTAA	4 cut(s)	33, 240, 845, 1197
MslI	CAYNNNNRTG	1 cut(s)	732
MspA1I	CMGCKG	2 cut(s)	1050, 1109
MspI	CCGG	2 cut(s)	423, 1205
MspR9I	CCNGG	3 cut(s)	44, 522, 724
MvaI	CCWGG	3 cut(s)	44, 522, 724
MvnI	CGCG	1 cut(s)	966
MwoI	GCNNNNNNNGC	1 cut(s)	149
NdeII	GATC	6 cut(s)	71, 289, 343, 622, 697, 971
NlaIII	CATG	8 cut(s)	200, 296, 377, 404, 612, 641, 1087, 1175
NlaIV	GGNNCC	9 cut(s)	48, 89, 90, 517, 624, 882, 1203, 1224, 1246
NmuCI	GTSAC	2 cut(s)	980, 1027
NruI	TCGCGA	1 cut(s)	966
NspI	RCATGY	4 cut(s)	377, 404, 612, 641
PaeI	GCATGC	2 cut(s)	377, 641
PceI	AGGCCT	1 cut(s)	817
PcsI	WCGNNNNNNNCGW	1 cut(s)	976
PfeI	GAWTC	2 cut(s)	39, 1166
PflFI	GACNNNGTC	1 cut(s)	454
PflMI	CCANNNNNTGG	2 cut(s)	527, 870
PkrI	GCNGC	3 cut(s)	299, 428, 1111
PleI	GAGTC	1 cut(s)	541
PpsI	GAGTC	1 cut(s)	541
Ppu21I	YACGTR	1 cut(s)	827
PpuMI	RGGWCCY	1 cut(s)	46
Psp124BI	GAGCTC	1 cut(s)	67
Psp5II	RGGWCCY	1 cut(s)	46
Psp6I	CCWGG	3 cut(s)	42, 520, 722
PspGI	CCWGG	3 cut(s)	42, 520, 722
PspN4I	GGNNCC	9 cut(s)	48, 89, 90, 517, 624, 882, 1203, 1224, 1246
PspOMI	GGGCCC	1 cut(s)	88
PspPI	GGNCC	4 cut(s)	46, 88, 89, 1139
PspPPI	RGGWCCY	1 cut(s)	46
PstNI	CAGNNNCTG	1 cut(s)	1232
PsuI	RGATCY	2 cut(s)	622, 697
PsyI	GACNNNGTC	1 cut(s)	454
PvuII	CAGCTG	1 cut(s)	1109
RruI	TCGCGA	1 cut(s)	966
RsaI	GTAC	3 cut(s)	355, 692, 1203
RsaNI	GTAC	3 cut(s)	354, 691, 1202
RseI	CAYNNNNRTG	1 cut(s)	732
SacI	GAGCTC	1 cut(s)	67
SaqAI	TTAA	4 cut(s)	33, 240, 845, 1197
SatI	GCNGC	3 cut(s)	298, 427, 1110
Sau3AI	GATC	6 cut(s)	71, 289, 343, 622, 697, 971
Sau96I	GGNCC	4 cut(s)	46, 88, 89, 1139
SchI	GAGTC	1 cut(s)	542
ScrFI	CCNGG	3 cut(s)	44, 522, 724
SduI	GDGCHC	2 cut(s)	67, 92
SfcI	CTRYAG	1 cut(s)	147
SinI	GGWCC	1 cut(s)	46
SmiMI	CAYNNNNRTG	1 cut(s)	732
SmlI	CTYRAG	2 cut(s)	204, 1143
SmoI	CTYRAG	2 cut(s)	204, 1143
SphI	GCATGC	2 cut(s)	377, 641
SseBI	AGGCCT	1 cut(s)	817
SsiI	CCGC	2 cut(s)	186, 1050
SspMI	CTAG	7 cut(s)	20, 60, 78, 192, 287, 320, 777
SstI	GAGCTC	1 cut(s)	67
StuI	AGGCCT	1 cut(s)	817
StyD4I	CCNGG	3 cut(s)	42, 520, 722
StyI	CCWWGG	2 cut(s)	618, 1161
TaaI	ACNGT	3 cut(s)	569, 658, 1240
TaiI	ACGT	2 cut(s)	829, 982
TaqII	GACCGA	1 cut(s)	852
TatI	WGTACW	2 cut(s)	353, 690
TfiI	GAWTC	2 cut(s)	39, 1166
Tru1I	TTAA	4 cut(s)	33, 240, 845, 1197
Tru9I	TTAA	4 cut(s)	33, 240, 845, 1197
TscAI	CASTG	1 cut(s)	574
TseFI	GTSAC	2 cut(s)	980, 1027
TseI	GCWGC	3 cut(s)	297, 426, 1109
Tsp45I	GTSAC	2 cut(s)	980, 1027
TspDTI	ATGAA	4 cut(s)	171, 273, 294, 1100
TspRI	CASTG	1 cut(s)	574
Tth111I	GACNNNGTC	1 cut(s)	454
Van91I	CCANNNNNTGG	2 cut(s)	527, 870
VpaK11BI	GGWCC	1 cut(s)	46
XapI	RAATTY	5 cut(s)	211, 365, 418, 555, 1178
XbaI	TCTAGA	2 cut(s)	286, 319
XceI	RCATGY	4 cut(s)	377, 404, 612, 641
XcmI	CCANNNNNNNNNTGG	1 cut(s)	625
XspI	CTAG	7 cut(s)	20, 60, 78, 192, 287, 320, 777

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.