Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0007689

Physical Location & Seq

Genomic Coordinates Forward (+)

18170034 .. 18171974

Gene Structure 1941 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g23250.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGGCCCTCCGCCTCCTCCTCCTCCTCCTCTCCAGCGCGTGGACTGCACTCTCCATCACCCTCTGCCCTCCCTGCGGCACCACCGCCGTCCCCTACCCCCTCTCCACCTCCCCCACCTGCGGCGACCAATCCTACAAACTCCTCTGCCTCAACAACTCCACCCTCCTCTTCCCCACTCTCAACAACTCGTACCCCATCTCCTCCATCATCCCCTCCTCCCAACGACTAGTCGTACGCCCCTCCTCTTTCCTCTCCCCCTCTTCCTTCGTCACCACTGACGTCATCCACCAGGGAATCCAGCTCAACGAGTCCCTCCCCTTCAACGTCACCAGCAGCAACACCATCCTCTACCTCAACTGCACCGACTCGATCCTTCGCTCGCCGCTCAACTGCACGGCGTCGAGCTTATGTCATACTTACGTCAACAACACGAATTCTGTGGAGTCGTGTAGGGAGTCGCCGATTTGCTGCACGTTCCGGGCGGGCGGGTCGTCGACGTCGTATATGATCCGGGTCAGGGACTCGGGTTGTAGCGCCTATACGAGCTTTGTGAACTTGGATTCGGGTTTTCCGGTGGGGAAGTGGCCGGAGCCGGGTGTGGAGATACAGTGGGTGGCGCCGAGGGAGCCGGTTTGCGAGCTGATGTCCTCTCAGAAAGCTATAGATTTCAACAGGGACGCCGATGATGTGAACCTTGCAGTTTATGTGCAGAGGCTGATGGCGGAAGAGAAGCTTATCGATGCAATTGATCCAATGCTGAAAGAAGGAGCTACAGCTTTGGAGCTGGACACCATGAAGGCACTAGGGTTCTTGGCATTGGGTTGCTTGGAGGAACGCAGACAGAATAGGCCTTTGATGAAAGAAGTCGTGGAGGAGATTGAGTACATTACAAGCATTGCCACATCAAAGGTTGTCGACGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GUB_WAK_bind Pkinase Pkinase_Tyr

Protein Analysis

308

Amino Acids

33.62

Weight (kDa)

4.85

Isoelectric Point (pI)

55.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GUB_WAK_bind	PF13947	22 - 78	3.8e-07	Wall-associated receptor kinase galacturonan-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007689)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02070
fragaria_vesca	FvH4_7g23160 FvH4_7g23250 FvH4_7g23370
malus_domestica	MD01G1139800.v1.1
prunus_persica	Prupe.2G240400_v2.0.a1 Prupe.6G261200_v2.0.a1
pyrus_communis	pycom01g16030 pycom08g15310
rosa_chinensis	RchiOBHm_Chr1g0368501 RchiOBHm_Chr3g0483591
rosa_laevigata	RLG00000027208
rosa_multiflora	Rmu_co8210558.1_g000001 Rmu_co8455625.1_g000001 Rmu_sc0006908.1_g000003 Rmu_sc0011394.1_g000011
rosa_roxburghii	Rroxscaffold_4G00288490
rosa_rugosa	Rorug01G0342300.1
rosa_samantha	Rh1AG349700 Rh1BG312700 Rh1BG312800 Rh1CG327600 Rh1DG344200 Rh1DG344300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	125
AatII	GACGTC	2 cut(s)	282, 500
Acc36I	ACCTGC	1 cut(s)	125
AccB1I	GGYRCC	2 cut(s)	77, 616
AccB7I	CCANNNNNTGG	1 cut(s)	39
AccBSI	CCGCTC	1 cut(s)	385
AccI	GTMKAC	2 cut(s)	494, 915
AccII	CGCG	1 cut(s)	38
AciI	CCGC	8 cut(s)	10, 75, 84, 120, 383, 482, 486, 722
AclWI	GGATC	3 cut(s)	364, 502, 743
AcoI	YGGCCR	1 cut(s)	584
AcsI	RAATTY	1 cut(s)	433
AcyI	GRCGYC	5 cut(s)	279, 398, 497, 617, 678
AfaI	GTAC	3 cut(s)	191, 234, 884
AfiI	CCNNNNNNNGG	5 cut(s)	39, 74, 119, 517, 593
AgsI	TTSAA	2 cut(s)	322, 670
AhlI	ACTAGT	1 cut(s)	226
AjnI	CCWGG	1 cut(s)	288
AluBI	AGCT	9 cut(s)	301, 405, 546, 640, 659, 733, 770, 776, 784
AluI	AGCT	9 cut(s)	301, 405, 546, 640, 659, 733, 770, 776, 784
AlwI	GGATC	3 cut(s)	364, 502, 743
AlwNI	CAGNNNCTG	1 cut(s)	715
Ama87I	CYCGRG	1 cut(s)	523
AoxI	GGCC	3 cut(s)	3, 584, 848
ApeKI	GCWGC	2 cut(s)	333, 468
ApoI	RAATTY	1 cut(s)	433
AspLEI	GCGC	3 cut(s)	38, 536, 619
AspS9I	GGNCC	1 cut(s)	4
AsuC2I	CCSGG	3 cut(s)	479, 512, 594
AsuHPI	GGTGA	3 cut(s)	49, 262, 319
AvaI	CYCGRG	1 cut(s)	523
BanI	GGYRCC	2 cut(s)	77, 616
BbvI	GCAGC	2 cut(s)	345, 455
BccI	CCATC	5 cut(s)	62, 203, 212, 350, 712
BceAI	ACGGC	2 cut(s)	71, 411
BciT130I	CCWGG	1 cut(s)	290
BcnI	CCSGG	3 cut(s)	479, 512, 594
BcuI	ACTAGT	1 cut(s)	226
BfaI	CTAG	3 cut(s)	227, 803, 922
BfmI	CTRYAG	2 cut(s)	660, 771
BfoI	RGCGCY	2 cut(s)	537, 620
BfuAI	ACCTGC	1 cut(s)	125
BisI	GCNGC	5 cut(s)	76, 121, 334, 383, 469
BlsI	GCNGC	5 cut(s)	77, 122, 335, 384, 470
Bme1390I	CCNGG	4 cut(s)	290, 479, 512, 594
BmeT110I	CYCGRG	1 cut(s)	523
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	4 cut(s)	79, 591, 618, 627
BmrFI	CCNGG	4 cut(s)	290, 479, 512, 594
BmsI	GCATC	1 cut(s)	730
BpmI	CTGGAG	1 cut(s)	16
BpuMI	CCSGG	3 cut(s)	479, 512, 594
Bsa29I	ATCGAT	1 cut(s)	738
BsaHI	GRCGYC	5 cut(s)	279, 398, 497, 617, 678
BsaJI	CCNNGG	2 cut(s)	289, 620
BsaWI	WCCGGW	1 cut(s)	571
BsaXI	ACNNNNNCTCC	8 cut(s)	86, 116, 182, 212, 593, 623, 866, 896
Bsc4I	CCNNNNNNNGG	5 cut(s)	39, 74, 119, 517, 593
Bse118I	RCCGGY	1 cut(s)	628
Bse3DI	GCAATG	1 cut(s)	894
BseBI	CCWGG	1 cut(s)	290
BseCI	ATCGAT	1 cut(s)	738
BseDI	CCNNGG	2 cut(s)	289, 620
BseGI	GGATG	3 cut(s)	207, 282, 342
BseLI	CCNNNNNNNGG	5 cut(s)	39, 74, 119, 517, 593
BseMI	GCAATG	1 cut(s)	894
BseMII	CTCAG	1 cut(s)	665
BseXI	GCAGC	2 cut(s)	345, 455
BsgI	GTGCAG	5 cut(s)	30, 343, 376, 454, 728
Bsh1236I	CGCG	1 cut(s)	38
BshFI	GGCC	3 cut(s)	5, 586, 850
BshNI	GGYRCC	2 cut(s)	77, 616
BshVI	ATCGAT	1 cut(s)	738
BsiHKCI	CYCGRG	1 cut(s)	523
BsiSI	CCGG	6 cut(s)	478, 511, 572, 587, 593, 629
BsiWI	CGTACG	1 cut(s)	232
BslFI	GGGAC	4 cut(s)	74, 295, 533, 689
BslI	CCNNNNNNNGG	5 cut(s)	39, 74, 119, 517, 593
BsmFI	GGGAC	4 cut(s)	74, 295, 533, 689
BsnI	GGCC	3 cut(s)	5, 586, 850
BsoBI	CYCGRG	1 cut(s)	523
Bsp143I	GATC	3 cut(s)	369, 507, 748
BspACI	CCGC	8 cut(s)	10, 75, 84, 120, 383, 482, 486, 722
BspANI	GGCC	3 cut(s)	5, 586, 850
BspCNI	CTCAG	1 cut(s)	664
BspDI	ATCGAT	1 cut(s)	738
BspFNI	CGCG	1 cut(s)	38
BspLI	GGNNCC	4 cut(s)	79, 591, 618, 627
BspMI	ACCTGC	1 cut(s)	125
BspPI	GGATC	3 cut(s)	364, 502, 743
BspT107I	GGYRCC	2 cut(s)	77, 616
BsrBI	CCGCTC	1 cut(s)	385
BsrDI	GCAATG	1 cut(s)	894
BsrFI	RCCGGY	1 cut(s)	628
BssAI	RCCGGY	1 cut(s)	628
BssECI	CCNNGG	2 cut(s)	289, 620
BssMI	GATC	3 cut(s)	369, 507, 748
BssNI	GRCGYC	5 cut(s)	279, 398, 497, 617, 678
Bst2UI	CCWGG	1 cut(s)	290
Bst4CI	ACNGT	1 cut(s)	609
Bst6I	CTCTTC	3 cut(s)	173, 265, 720
BstACI	GRCGYC	5 cut(s)	279, 398, 497, 617, 678
BstC8I	GCNNGC	3 cut(s)	380, 484, 638
BstDEI	CTNAG	1 cut(s)	651
BstF5I	GGATG	3 cut(s)	207, 282, 342
BstFNI	CGCG	1 cut(s)	38
BstH2I	RGCGCY	2 cut(s)	537, 620
BstHHI	GCGC	3 cut(s)	38, 536, 619
BstKTI	GATC	3 cut(s)	372, 510, 751
BstMBI	GATC	3 cut(s)	369, 507, 748
BstMWI	GCNNNNNNNGC	3 cut(s)	44, 72, 625
BstNI	CCWGG	1 cut(s)	290
BstSCI	CCNGG	4 cut(s)	288, 477, 510, 592
BstSFI	CTRYAG	2 cut(s)	660, 771
BstUI	CGCG	1 cut(s)	38
BstV1I	GCAGC	2 cut(s)	345, 455
Bsu15I	ATCGAT	1 cut(s)	738
BsuRI	GGCC	3 cut(s)	5, 586, 850
BsuTUI	ATCGAT	1 cut(s)	738
BtsCI	GGATG	3 cut(s)	207, 282, 342
BtsIMutI	CAGTG	2 cut(s)	273, 614
BveI	ACCTGC	1 cut(s)	125
Cac8I	GCNNGC	3 cut(s)	380, 484, 638
CaiI	CAGNNNCTG	1 cut(s)	715
CfoI	GCGC	3 cut(s)	38, 536, 619
Cfr10I	RCCGGY	1 cut(s)	628
Cfr13I	GGNCC	1 cut(s)	4
ClaI	ATCGAT	1 cut(s)	738
CseI	GACGC	2 cut(s)	387, 686
Csp6I	GTAC	3 cut(s)	190, 233, 883
CviAII	CATG	1 cut(s)	793
CviQI	GTAC	3 cut(s)	190, 233, 883
DdeI	CTNAG	1 cut(s)	651
DinI	GGCGCC	1 cut(s)	618
DpnI	GATC	3 cut(s)	371, 509, 750
DpnII	GATC	3 cut(s)	369, 507, 748
EaeI	YGGCCR	1 cut(s)	584
Eam1104I	CTCTTC	3 cut(s)	173, 265, 720
EarI	CTCTTC	3 cut(s)	173, 265, 720
EciI	GGCGGA	1 cut(s)	737
Eco147I	AGGCCT	1 cut(s)	850
Eco88I	CYCGRG	1 cut(s)	523
EcoRI	GAATTC	1 cut(s)	433
EcoRII	CCWGG	1 cut(s)	288
EgeI	GGCGCC	1 cut(s)	618
EheI	GGCGCC	1 cut(s)	618
FaeI	CATG	1 cut(s)	796
FaiI	YATR	8 cut(s)	409, 414, 504, 506, 540, 662, 705, 794
FalI	AAGNNNNNCTT	2 cut(s)	717, 749
FaqI	GGGAC	4 cut(s)	74, 295, 533, 689
FatI	CATG	1 cut(s)	792
FauI	CCCGC	2 cut(s)	475, 479
FblI	GTMKAC	2 cut(s)	494, 915
Fnu4HI	GCNGC	5 cut(s)	76, 121, 334, 383, 469
FokI	GGATG	3 cut(s)	194, 269, 329
Fsp4HI	GCNGC	5 cut(s)	76, 121, 334, 383, 469
FspBI	CTAG	3 cut(s)	227, 803, 922
GlaI	GCGC	3 cut(s)	37, 535, 618
GluI	GCNGC	5 cut(s)	76, 121, 334, 383, 469
GsuI	CTGGAG	1 cut(s)	16
HaeII	RGCGCY	2 cut(s)	537, 620
HaeIII	GGCC	3 cut(s)	5, 586, 850
HapII	CCGG	6 cut(s)	478, 511, 572, 587, 593, 629
HgaI	GACGC	2 cut(s)	387, 686
HhaI	GCGC	3 cut(s)	38, 536, 619
Hin1I	GRCGYC	5 cut(s)	279, 398, 497, 617, 678
Hin1II	CATG	1 cut(s)	796
Hin6I	GCGC	3 cut(s)	36, 534, 617
HinP1I	GCGC	3 cut(s)	36, 534, 617
HincII	GTYRAC	3 cut(s)	424, 495, 916
HindII	GTYRAC	3 cut(s)	424, 495, 916
HindIII	AAGCTT	1 cut(s)	731
HinfI	GANTC	7 cut(s)	294, 308, 365, 443, 455, 521, 560
HpaII	CCGG	6 cut(s)	478, 511, 572, 587, 593, 629
HphI	GGTGA	3 cut(s)	49, 262, 319
Hpy166II	GTNNAC	6 cut(s)	42, 424, 495, 553, 691, 916
Hpy188I	TCNGA	1 cut(s)	654
Hpy8I	GTNNAC	6 cut(s)	42, 424, 495, 553, 691, 916
Hpy99I	CGWCG	5 cut(s)	403, 496, 499, 502, 920
HpyAV	CCTTC	5 cut(s)	274, 328, 383, 758, 790
HpyCH4III	ACNGT	1 cut(s)	609
HpyCH4IV	ACGT	5 cut(s)	279, 324, 420, 473, 497
HpyCH4V	TGCA	7 cut(s)	47, 360, 393, 471, 698, 709, 743
HpyF10VI	GCNNNNNNNGC	3 cut(s)	44, 72, 625
HpyF3I	CTNAG	1 cut(s)	651
HpySE526I	ACGT	5 cut(s)	279, 324, 420, 473, 497
Hsp92I	GRCGYC	5 cut(s)	279, 398, 497, 617, 678
Hsp92II	CATG	1 cut(s)	796
HspAI	GCGC	3 cut(s)	36, 534, 617
KasI	GGCGCC	1 cut(s)	616
Kzo9I	GATC	3 cut(s)	369, 507, 748
LmnI	GCTCC	4 cut(s)	589, 625, 767, 781
Lsp1109I	GCAGC	2 cut(s)	345, 455
LweI	GCATC	1 cut(s)	730
MaeI	CTAG	3 cut(s)	227, 803, 922
MaeII	ACGT	5 cut(s)	279, 324, 420, 473, 497
MaeIII	GTNAC	2 cut(s)	268, 325
MalI	GATC	3 cut(s)	371, 509, 750
MbiI	CCGCTC	1 cut(s)	385
MboI	GATC	3 cut(s)	369, 507, 748
MboII	GAAGA	3 cut(s)	160, 252, 737
MfeI	CAATTG	1 cut(s)	744
MluCI	AATT	2 cut(s)	433, 744
Mly113I	GGCGCC	1 cut(s)	617
MlyI	GAGTC	5 cut(s)	317, 359, 452, 464, 515
MspI	CCGG	6 cut(s)	478, 511, 572, 587, 593, 629
MspR9I	CCNGG	4 cut(s)	290, 479, 512, 594
MunI	CAATTG	1 cut(s)	744
MvaI	CCWGG	1 cut(s)	290
MvnI	CGCG	1 cut(s)	38
MwoI	GCNNNNNNNGC	3 cut(s)	44, 72, 625
NarI	GGCGCC	1 cut(s)	617
NciI	CCSGG	3 cut(s)	479, 512, 594
NdeII	GATC	3 cut(s)	369, 507, 748
NlaIII	CATG	1 cut(s)	796
NlaIV	GGNNCC	4 cut(s)	79, 591, 618, 627
NmeAIII	GCCGAG	1 cut(s)	645
NmuCI	GTSAC	2 cut(s)	268, 325
PaqCI	CACCTGC	1 cut(s)	125
PceI	AGGCCT	1 cut(s)	850
PcsI	WCGNNNNNNNCGW	1 cut(s)	497
PfeI	GAWTC	2 cut(s)	294, 560
Pfl23II	CGTACG	1 cut(s)	232
PflMI	CCANNNNNTGG	1 cut(s)	39
PkrI	GCNGC	5 cut(s)	77, 122, 335, 384, 470
PleI	GAGTC	5 cut(s)	316, 359, 451, 463, 515
PluTI	GGCGCC	1 cut(s)	620
PpsI	GAGTC	5 cut(s)	316, 359, 451, 463, 515
Psp6I	CCWGG	1 cut(s)	288
PspGI	CCWGG	1 cut(s)	288
PspLI	CGTACG	1 cut(s)	232
PspN4I	GGNNCC	4 cut(s)	79, 591, 618, 627
PspPI	GGNCC	1 cut(s)	4
PstNI	CAGNNNCTG	1 cut(s)	715
RsaI	GTAC	3 cut(s)	191, 234, 884
RsaNI	GTAC	3 cut(s)	190, 233, 883
SalI	GTCGAC	2 cut(s)	493, 914
SatI	GCNGC	5 cut(s)	76, 121, 334, 383, 469
Sau3AI	GATC	3 cut(s)	369, 507, 748
Sau96I	GGNCC	1 cut(s)	4
SchI	GAGTC	5 cut(s)	317, 359, 452, 464, 515
ScrFI	CCNGG	4 cut(s)	290, 479, 512, 594
SfaNI	GCATC	1 cut(s)	730
SfcI	CTRYAG	2 cut(s)	660, 771
SfoI	GGCGCC	1 cut(s)	618
SgrDI	CGTCGACG	1 cut(s)	493
SpeI	ACTAGT	1 cut(s)	226
Sse9I	AATT	2 cut(s)	433, 744
SseBI	AGGCCT	1 cut(s)	850
SsiI	CCGC	8 cut(s)	10, 75, 84, 120, 383, 482, 486, 722
SspDI	GGCGCC	1 cut(s)	616
SspMI	CTAG	3 cut(s)	227, 803, 922
StuI	AGGCCT	1 cut(s)	850
StyD4I	CCNGG	4 cut(s)	288, 477, 510, 592
TaaI	ACNGT	1 cut(s)	609
TaiI	ACGT	5 cut(s)	282, 327, 423, 476, 500
TaqI	TCGA	5 cut(s)	368, 401, 494, 738, 915
TasI	AATT	2 cut(s)	433, 744
TatI	WGTACW	1 cut(s)	882
TauI	GCSGC	3 cut(s)	78, 123, 385
TfiI	GAWTC	2 cut(s)	294, 560
TscAI	CASTG	2 cut(s)	280, 614
TseFI	GTSAC	2 cut(s)	268, 325
TseI	GCWGC	2 cut(s)	333, 468
Tsp45I	GTSAC	2 cut(s)	268, 325
TspDTI	ATGAA	2 cut(s)	809, 872
TspRI	CASTG	2 cut(s)	280, 614
Van91I	CCANNNNNTGG	1 cut(s)	39
XapI	RAATTY	1 cut(s)	433
XmiI	GTMKAC	2 cut(s)	494, 915
XspI	CTAG	3 cut(s)	227, 803, 922
ZraI	GACGTC	2 cut(s)	280, 498

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.