Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011394.1

Orthogroup ID

OG0007689

Physical Location & Seq

Genomic Coordinates Reverse (-)

46422 .. 48110

Gene Structure 1689 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011394.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1061 bp

gtttgacttctggcattggcgcatcactacttgcagccatcattgccattgttctttacaagcgccacaggcgcatcaaagaagctcaagaccgcctgaccaaagagcgagaagcaatcctaaatgcgaatggaggcagagcagcaaaagtcttcaccggaaaagagattaaaaaggcaacaaacagcttctccagagacctcctcttaggtgctggtggatatggtgaagtctacaaaggaacacttgaagatggcactgtcgtggctgtgaagatcgcgaagattggaaacacgaaaggcactgaccaagtcctcaatgaggtccgaattctgtgccaagttaaccacaggagtcttgtgcacttactcggttgttgtgtggagttagagcagcctattatggtttatgagtacattgagaatggaactctacttgagcatttccaagctcgaaaaggtgttggtcgaacacctctctcgtggactcaacgtctccaaattgctcatgacactgctgagggtcttgcttatctccacttctcagctgtccctccaatttatcaccgtgacgtgaagtctagtaacattcttcttgataacaaattgaatgccaaggttgctgattttggactatcacgattggctcatactgatatgagtcacatttcaacatgtgctcagggaactcttggataccttgatcctgaatattacagaaattatcaattgactgataagagtgatgtctacagctttggtgtggtgctgttggagctgatgtcctcgcagaaagctatagacttcaacagggaccccgatgatgtgaaccttgcagtttatgtgcagaggctgatggcggaagagaagttaatggatgcgattgatccactgctgaaagaaggagctacagctttggagctggacaccatgaaggcattggggttcttggcattgggttgcttagaggaacgcagacagaataggccttcgatgaaagaagttgtggaggagattgagtatattacaagcattgccacagcaaaggtcaacgacgactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GUB_WAK_bind Pkinase Pkinase_Tyr

Protein Analysis

352

Amino Acids

39.07

Weight (kDa)

6.19

Isoelectric Point (pI)

25.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007689)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02070
fragaria_vesca	FvH4_7g23160 FvH4_7g23250 FvH4_7g23370
malus_domestica	MD01G1139800.v1.1
prunus_persica	Prupe.2G240400_v2.0.a1 Prupe.6G261200_v2.0.a1
pyrus_communis	pycom01g16030 pycom08g15310
rosa_chinensis	RchiOBHm_Chr1g0368501 RchiOBHm_Chr3g0483591
rosa_laevigata	RLG00000027208
rosa_multiflora	Rmu_co8210558.1_g000001 Rmu_co8455625.1_g000001 Rmu_sc0006908.1_g000003 Rmu_sc0011394.1_g000011
rosa_roxburghii	Rroxscaffold_4G00288490
rosa_rugosa	Rorug01G0342300.1
rosa_samantha	Rh1AG349700 Rh1BG312700 Rh1BG312800 Rh1CG327600 Rh1DG344200 Rh1DG344300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	233, 749
AccII	CGCG	1 cut(s)	280
AciI	CCGC	2 cut(s)	93, 859
AclWI	GGATC	2 cut(s)	697, 880
AcsI	RAATTY	1 cut(s)	329
AfaI	GTAC	1 cut(s)	415
AfiI	CCNNNNNNNGG	1 cut(s)	321
AflIII	ACRYGT	1 cut(s)	673
AgsI	TTSAA	4 cut(s)	250, 609, 671, 807
AhdI	GACNNNNNGTC	2 cut(s)	491, 576
AjiI	CACGTC	1 cut(s)	573
AleI	CACNNNNGTG	1 cut(s)	262
Alw21I	GWGCWC	2 cut(s)	365, 681
Alw26I	GTCTC	2 cut(s)	191, 499
Alw44I	GTGCAC	1 cut(s)	361
AlwI	GGATC	2 cut(s)	697, 880
AlwNI	CAGNNNCTG	1 cut(s)	852
AoxI	GGCC	1 cut(s)	985
ApaLI	GTGCAC	1 cut(s)	361
ApeKI	GCWGC	3 cut(s)	34, 142, 393
ApoI	RAATTY	1 cut(s)	329
AspLEI	GCGC	3 cut(s)	22, 65, 74
AspS9I	GGNCC	2 cut(s)	324, 813
AsuHPI	GGTGA	3 cut(s)	147, 238, 556
AvaII	GGWCC	2 cut(s)	324, 813
BaeGI	GKGCMC	1 cut(s)	365
BauI	CACGAG	1 cut(s)	480
BbsI	GAAGAC	1 cut(s)	144
Bbv12I	GWGCWC	2 cut(s)	365, 681
BbvCI	CCTCAGC	1 cut(s)	518
BbvI	GCAGC	3 cut(s)	46, 154, 405
BccI	CCATC	3 cut(s)	46, 247, 849
BcgI	CGANNNNNNTGC	2 cut(s)	317, 351
BciVI	GTATCC	1 cut(s)	688
BcoDI	GTCTC	2 cut(s)	191, 499
BfaI	CTAG	1 cut(s)	581
BfmI	CTRYAG	3 cut(s)	750, 797, 908
BfoI	RGCGCY	1 cut(s)	66
BfuI	GTATCC	1 cut(s)	688
BisI	GCNGC	3 cut(s)	35, 143, 394
BlsI	GCNGC	3 cut(s)	36, 144, 395
Bme18I	GGWCC	2 cut(s)	324, 813
BmeRI	GACNNNNNGTC	2 cut(s)	491, 576
BmgBI	CACGTC	1 cut(s)	573
BmgT120I	GGNCC	2 cut(s)	324, 813
BmiI	GGNNCC	2 cut(s)	814, 815
BmsI	GCATC	3 cut(s)	31, 83, 867
BpiI	GAAGAC	1 cut(s)	144
BplI	GAGNNNNNCTC	2 cut(s)	188, 220
BpmI	CTGGAG	1 cut(s)	177
Bpu10I	CCTNAGC	2 cut(s)	518, 680
BpuEI	CTTGAG	2 cut(s)	71, 457
BsaI	GGTCTC	1 cut(s)	191
BsaJI	CCNNGG	1 cut(s)	614
BsaWI	WCCGGW	1 cut(s)	157
BsaXI	ACNNNNNCTCC	6 cut(s)	175, 205, 766, 796, 1003, 1033
Bsc4I	CCNNNNNNNGG	1 cut(s)	321
Bse3DI	GCAATG	2 cut(s)	41, 1031
BseDI	CCNNGG	1 cut(s)	614
BseGI	GGATG	1 cut(s)	882
BseLI	CCNNNNNNNGG	1 cut(s)	321
BseMI	GCAATG	2 cut(s)	41, 1031
BseMII	CTCAG	3 cut(s)	509, 557, 694
BseRI	GAGGAG	2 cut(s)	193, 1024
BseSI	GKGCMC	1 cut(s)	365
BseXI	GCAGC	3 cut(s)	46, 154, 405
BsgI	GTGCAG	1 cut(s)	865
Bsh1236I	CGCG	1 cut(s)	280
BshFI	GGCC	1 cut(s)	987
BsiHKAI	GWGCWC	2 cut(s)	365, 681
BsiSI	CCGG	1 cut(s)	158
BslFI	GGGAC	2 cut(s)	535, 826
BslI	CCNNNNNNNGG	1 cut(s)	321
BsmAI	GTCTC	2 cut(s)	191, 499
BsmBI	CGTCTC	1 cut(s)	499
BsmFI	GGGAC	2 cut(s)	535, 826
BsmI	GAATGC	1 cut(s)	615
BsnI	GGCC	1 cut(s)	987
Bso31I	GGTCTC	1 cut(s)	191
Bsp1286I	GDGCHC	2 cut(s)	365, 681
Bsp143I	GATC	3 cut(s)	275, 702, 885
Bsp68I	TCGCGA	1 cut(s)	280
BspACI	CCGC	2 cut(s)	93, 859
BspANI	GGCC	1 cut(s)	987
BspCNI	CTCAG	3 cut(s)	510, 556, 693
BspFNI	CGCG	1 cut(s)	280
BspHI	TCATGA	1 cut(s)	507
BspLI	GGNNCC	2 cut(s)	814, 815
BspPI	GGATC	2 cut(s)	697, 880
BspTNI	GGTCTC	1 cut(s)	191
BsrDI	GCAATG	2 cut(s)	41, 1031
BssECI	CCNNGG	1 cut(s)	614
BssMI	GATC	3 cut(s)	275, 702, 885
BssSI	CACGAG	1 cut(s)	480
BssT1I	CCWWGG	1 cut(s)	614
Bst2BI	CACGAG	1 cut(s)	480
Bst4CI	ACNGT	2 cut(s)	261, 568
Bst6I	CTCTTC	1 cut(s)	857
BstDEI	CTNAG	5 cut(s)	207, 518, 543, 680, 963
BstENI	CCTNNNNNAGG	1 cut(s)	319
BstF5I	GGATG	1 cut(s)	882
BstFNI	CGCG	1 cut(s)	280
BstH2I	RGCGCY	1 cut(s)	66
BstHHI	GCGC	3 cut(s)	22, 65, 74
BstKTI	GATC	3 cut(s)	278, 705, 888
BstMAI	GTCTC	2 cut(s)	191, 499
BstMBI	GATC	3 cut(s)	275, 702, 885
BstMWI	GCNNNNNNNGC	5 cut(s)	43, 69, 71, 619, 774
BstNSI	RCATGY	1 cut(s)	677
BstSFI	CTRYAG	3 cut(s)	750, 797, 908
BstSLI	GKGCMC	1 cut(s)	365
BstUI	CGCG	1 cut(s)	280
BstV1I	GCAGC	3 cut(s)	46, 154, 405
BstV2I	GAAGAC	1 cut(s)	144
BsuI	GTATCC	1 cut(s)	688
BsuRI	GGCC	1 cut(s)	987
BtrI	CACGTC	1 cut(s)	573
BtsCI	GGATG	1 cut(s)	882
BtsI	GCAGTG	2 cut(s)	512, 889
BtsIMutI	CAGTG	4 cut(s)	257, 302, 512, 889
BtuMI	TCGCGA	1 cut(s)	280
CaiI	CAGNNNCTG	1 cut(s)	852
CciI	TCATGA	1 cut(s)	507
CfoI	GCGC	3 cut(s)	22, 65, 74
Cfr13I	GGNCC	2 cut(s)	324, 813
Csp6I	GTAC	1 cut(s)	414
CviAII	CATG	3 cut(s)	508, 674, 930
CviQI	GTAC	1 cut(s)	414
DdeI	CTNAG	5 cut(s)	207, 518, 543, 680, 963
DpnI	GATC	3 cut(s)	277, 704, 887
DpnII	GATC	3 cut(s)	275, 702, 885
DriI	GACNNNNNGTC	2 cut(s)	491, 576
Eam1104I	CTCTTC	1 cut(s)	857
Eam1105I	GACNNNNNGTC	2 cut(s)	491, 576
EarI	CTCTTC	1 cut(s)	857
EciI	GGCGGA	1 cut(s)	874
Eco130I	CCWWGG	1 cut(s)	614
Eco147I	AGGCCT	1 cut(s)	987
Eco31I	GGTCTC	1 cut(s)	191
Eco47I	GGWCC	2 cut(s)	324, 813
EcoNI	CCTNNNNNAGG	1 cut(s)	319
EcoO109I	RGGNCCY	1 cut(s)	813
EcoRI	GAATTC	1 cut(s)	329
EcoT14I	CCWWGG	1 cut(s)	614
ErhI	CCWWGG	1 cut(s)	614
Esp3I	CGTCTC	1 cut(s)	499
FaeI	CATG	3 cut(s)	511, 677, 933
FalI	AAGNNNNNCTT	2 cut(s)	230, 262
FaqI	GGGAC	2 cut(s)	535, 826
FatI	CATG	3 cut(s)	507, 673, 929
FblI	GTMKAC	2 cut(s)	233, 749
Fnu4HI	GCNGC	3 cut(s)	35, 143, 394
FokI	GGATG	1 cut(s)	889
Fsp4HI	GCNGC	3 cut(s)	35, 143, 394
FspBI	CTAG	1 cut(s)	581
GlaI	GCGC	3 cut(s)	21, 64, 73
GluI	GCNGC	3 cut(s)	35, 143, 394
GsuI	CTGGAG	1 cut(s)	177
HaeII	RGCGCY	1 cut(s)	66
HaeIII	GGCC	1 cut(s)	987
HapII	CCGG	1 cut(s)	158
HhaI	GCGC	3 cut(s)	22, 65, 74
Hin1II	CATG	3 cut(s)	511, 677, 933
Hin6I	GCGC	3 cut(s)	20, 63, 72
HinP1I	GCGC	3 cut(s)	20, 63, 72
HincII	GTYRAC	2 cut(s)	345, 1050
HindII	GTYRAC	2 cut(s)	345, 1050
HinfI	GANTC	3 cut(s)	354, 486, 660
HpaI	GTTAAC	1 cut(s)	345
HpaII	CCGG	1 cut(s)	158
HphI	GGTGA	3 cut(s)	147, 238, 556
Hpy166II	GTNNAC	7 cut(s)	234, 345, 363, 485, 750, 828, 1050
Hpy188I	TCNGA	1 cut(s)	328
Hpy188III	TCNNGA	7 cut(s)	88, 194, 279, 508, 595, 638, 706
Hpy8I	GTNNAC	7 cut(s)	234, 345, 363, 485, 750, 828, 1050
Hpy99I	CGWCG	1 cut(s)	1057
HpyAV	CCTTC	3 cut(s)	895, 927, 998
HpyCH4III	ACNGT	2 cut(s)	261, 568
HpyCH4IV	ACGT	2 cut(s)	492, 572
HpyCH4V	TGCA	4 cut(s)	34, 363, 835, 846
HpyF10VI	GCNNNNNNNGC	5 cut(s)	43, 69, 71, 619, 774
HpyF3I	CTNAG	5 cut(s)	207, 518, 543, 680, 963
HpySE526I	ACGT	2 cut(s)	492, 572
Hsp92II	CATG	3 cut(s)	511, 677, 933
HspAI	GCGC	3 cut(s)	20, 63, 72
KflI	GGGWCCC	1 cut(s)	813
KspAI	GTTAAC	1 cut(s)	345
Kzo9I	GATC	3 cut(s)	275, 702, 885
LmnI	GCTCC	3 cut(s)	774, 904, 918
Lsp1109I	GCAGC	3 cut(s)	46, 154, 405
LweI	GCATC	3 cut(s)	31, 83, 867
MaeI	CTAG	1 cut(s)	581
MaeII	ACGT	2 cut(s)	492, 572
MaeIII	GTNAC	3 cut(s)	568, 583, 661
MalI	GATC	3 cut(s)	277, 704, 887
MboI	GATC	3 cut(s)	275, 702, 885
MboII	GAAGA	6 cut(s)	144, 262, 285, 294, 583, 874
MfeI	CAATTG	1 cut(s)	727
MhlI	GDGCHC	2 cut(s)	365, 681
MluCI	AATT	6 cut(s)	329, 500, 557, 604, 720, 727
MlyI	GAGTC	3 cut(s)	363, 480, 669
MmeI	TCCRAC	1 cut(s)	752
MseI	TTAA	3 cut(s)	170, 344, 871
MslI	CAYNNNNRTG	1 cut(s)	262
MspA1I	CMGCKG	1 cut(s)	547
MspI	CCGG	1 cut(s)	158
MunI	CAATTG	1 cut(s)	727
Mva1269I	GAATGC	1 cut(s)	615
MvnI	CGCG	1 cut(s)	280
MwoI	GCNNNNNNNGC	5 cut(s)	43, 69, 71, 619, 774
NdeII	GATC	3 cut(s)	275, 702, 885
NlaIII	CATG	3 cut(s)	511, 677, 933
NlaIV	GGNNCC	2 cut(s)	814, 815
NmuCI	GTSAC	2 cut(s)	568, 661
NruI	TCGCGA	1 cut(s)	280
NspI	RCATGY	1 cut(s)	677
OliI	CACNNNNGTG	1 cut(s)	262
PagI	TCATGA	1 cut(s)	507
PceI	AGGCCT	1 cut(s)	987
PciI	ACATGT	1 cut(s)	673
PctI	GAATGC	1 cut(s)	615
PflFI	GACNNNGTC	1 cut(s)	310
PkrI	GCNGC	3 cut(s)	36, 144, 395
PleI	GAGTC	3 cut(s)	362, 480, 668
PpsI	GAGTC	3 cut(s)	362, 480, 668
PpuMI	RGGWCCY	1 cut(s)	813
PscI	ACATGT	1 cut(s)	673
Psp5II	RGGWCCY	1 cut(s)	813
PspN4I	GGNNCC	2 cut(s)	814, 815
PspPI	GGNCC	2 cut(s)	324, 813
PspPPI	RGGWCCY	1 cut(s)	813
PstNI	CAGNNNCTG	1 cut(s)	852
PsyI	GACNNNGTC	1 cut(s)	310
PvuII	CAGCTG	1 cut(s)	547
RruI	TCGCGA	1 cut(s)	280
RsaI	GTAC	1 cut(s)	415
RsaNI	GTAC	1 cut(s)	414
RseI	CAYNNNNRTG	1 cut(s)	262
SaqAI	TTAA	3 cut(s)	170, 344, 871
SatI	GCNGC	3 cut(s)	35, 143, 394
Sau3AI	GATC	3 cut(s)	275, 702, 885
Sau96I	GGNCC	2 cut(s)	324, 813
SchI	GAGTC	3 cut(s)	363, 480, 669
SduI	GDGCHC	2 cut(s)	365, 681
SfaNI	GCATC	3 cut(s)	31, 83, 867
SfcI	CTRYAG	3 cut(s)	750, 797, 908
SinI	GGWCC	2 cut(s)	324, 813
SmiMI	CAYNNNNRTG	1 cut(s)	262
SmlI	CTYRAG	2 cut(s)	86, 436
SmoI	CTYRAG	2 cut(s)	86, 436
Sse9I	AATT	6 cut(s)	329, 500, 557, 604, 720, 727
SseBI	AGGCCT	1 cut(s)	987
SsiI	CCGC	2 cut(s)	93, 859
SspI	AATATT	1 cut(s)	712
SspMI	CTAG	1 cut(s)	581
StuI	AGGCCT	1 cut(s)	987
StyI	CCWWGG	1 cut(s)	614
TaaI	ACNGT	2 cut(s)	261, 568
TaiI	ACGT	2 cut(s)	495, 575
TaqI	TCGA	3 cut(s)	453, 468, 991
TasI	AATT	6 cut(s)	329, 500, 557, 604, 720, 727
TatI	WGTACW	1 cut(s)	413
Tru1I	TTAA	3 cut(s)	170, 344, 871
Tru9I	TTAA	3 cut(s)	170, 344, 871
TscAI	CASTG	4 cut(s)	264, 309, 519, 896
TseFI	GTSAC	2 cut(s)	568, 661
TseI	GCWGC	3 cut(s)	34, 142, 393
Tsp45I	GTSAC	2 cut(s)	568, 661
TspDTI	ATGAA	2 cut(s)	946, 1009
TspRI	CASTG	4 cut(s)	264, 309, 519, 896
Tth111I	GACNNNGTC	1 cut(s)	310
VneI	GTGCAC	1 cut(s)	361
VpaK11BI	GGWCC	2 cut(s)	324, 813
XagI	CCTNNNNNAGG	1 cut(s)	319
XapI	RAATTY	1 cut(s)	329
XceI	RCATGY	1 cut(s)	677
XcmI	CCANNNNNNNNNTGG	1 cut(s)	936
XmiI	GTMKAC	2 cut(s)	233, 749
XspI	CTAG	1 cut(s)	581

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.