Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0007689

Physical Location & Seq

Genomic Coordinates Reverse (-)

14963532 .. 14963999

Gene Structure 468 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g15310.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGTCAGTTGATAAACAAAATACAAGCATCTGTCAGTTAGCAAGCAGAATAATCCCAAAACTTTCATCGACCAATCATTGTTGGGTTCTGAAAGGTTGCAACACATTCACGAGTTTTGTGAACTTGGATCCGGGTTTGCCCGTTGATCGATGGCCTGAACTGGGAGTGGAGTTACAATGGGCATTGCCAAGGGAGCCCAAGTGTGGGACGCAGGTGGATTGCGAGGGGAAGTCCACTTGTAGGTCCAATCCGGCTGTCGGGGTGCTGGTAATTAACAAGCAAGTAGACATTGAAGACAAAGACGATGATGCAGAGAATAATGGCGACGATGACGAGCGCGAGGTTGAAATCGCCCATCCCGGCGGCGTTGTTTTAGCTGCTCTCGAATCAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GUB_WAK_bind Pkinase Pkinase_Tyr

Protein Analysis

132

Amino Acids

14.3

Weight (kDa)

4.49

Isoelectric Point (pI)

32.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007689)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02070
fragaria_vesca	FvH4_7g23160 FvH4_7g23250 FvH4_7g23370
malus_domestica	MD01G1139800.v1.1
prunus_persica	Prupe.2G240400_v2.0.a1 Prupe.6G261200_v2.0.a1
pyrus_communis	pycom01g16030 pycom08g15310
rosa_chinensis	RchiOBHm_Chr1g0368501 RchiOBHm_Chr3g0483591
rosa_laevigata	RLG00000027208
rosa_multiflora	Rmu_co8210558.1_g000001 Rmu_co8455625.1_g000001 Rmu_sc0006908.1_g000003 Rmu_sc0011394.1_g000011
rosa_roxburghii	Rroxscaffold_4G00288490
rosa_rugosa	Rorug01G0342300.1
rosa_samantha	Rh1AG349700 Rh1BG312700 Rh1BG312800 Rh1CG327600 Rh1DG344200 Rh1DG344300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	202
Acc36I	ACCTGC	1 cut(s)	202
AccI	GTMKAC	1 cut(s)	285
AccII	CGCG	1 cut(s)	339
AciI	CCGC	1 cut(s)	363
AclWI	GGATC	2 cut(s)	122, 135
AfiI	CCNNNNNNNGG	5 cut(s)	161, 203, 204, 240, 257
AgsI	TTSAA	2 cut(s)	293, 347
AluBI	AGCT	1 cut(s)	377
AluI	AGCT	1 cut(s)	377
AlwI	GGATC	2 cut(s)	122, 135
AoxI	GGCC	1 cut(s)	152
ApeKI	GCWGC	1 cut(s)	377
AspLEI	GCGC	1 cut(s)	339
AspS9I	GGNCC	1 cut(s)	243
AsuC2I	CCSGG	2 cut(s)	132, 360
AvaII	GGWCC	1 cut(s)	243
BamHI	GGATCC	1 cut(s)	127
BanII	GRGCYC	1 cut(s)	198
BauI	CACGAG	1 cut(s)	109
BbsI	GAAGAC	1 cut(s)	300
BbvI	GCAGC	1 cut(s)	364
BccI	CCATC	2 cut(s)	144, 363
BcnI	CCSGG	2 cut(s)	132, 360
BfuAI	ACCTGC	1 cut(s)	202
BisI	GCNGC	2 cut(s)	364, 378
BlsI	GCNGC	2 cut(s)	365, 379
Bme1390I	CCNGG	2 cut(s)	132, 360
Bme18I	GGWCC	1 cut(s)	243
BmgT120I	GGNCC	1 cut(s)	243
BmiI	GGNNCC	2 cut(s)	129, 195
BmrFI	CCNGG	2 cut(s)	132, 360
BmrI	ACTGGG	1 cut(s)	170
BmsI	GCATC	2 cut(s)	36, 298
BmuI	ACTGGG	1 cut(s)	170
BpiI	GAAGAC	1 cut(s)	300
BpuMI	CCSGG	2 cut(s)	132, 360
Bsa29I	ATCGAT	1 cut(s)	148
BsaJI	CCNNGG	1 cut(s)	188
BsaXI	ACNNNNNCTCC	2 cut(s)	185, 215
Bsc4I	CCNNNNNNNGG	5 cut(s)	161, 203, 204, 240, 257
Bse1I	ACTGG	1 cut(s)	165
Bse3DI	GCAATG	1 cut(s)	182
BseCI	ATCGAT	1 cut(s)	148
BseDI	CCNNGG	1 cut(s)	188
BseGI	GGATG	1 cut(s)	355
BseLI	CCNNNNNNNGG	5 cut(s)	161, 203, 204, 240, 257
BseMI	GCAATG	1 cut(s)	182
BseNI	ACTGG	1 cut(s)	165
BseXI	GCAGC	1 cut(s)	364
Bsh1236I	CGCG	1 cut(s)	339
BshFI	GGCC	1 cut(s)	154
BshVI	ATCGAT	1 cut(s)	148
BsiSI	CCGG	3 cut(s)	131, 251, 360
BslFI	GGGAC	1 cut(s)	220
BslI	CCNNNNNNNGG	5 cut(s)	161, 203, 204, 240, 257
BsmFI	GGGAC	1 cut(s)	220
BsnI	GGCC	1 cut(s)	154
Bsp1286I	GDGCHC	1 cut(s)	198
Bsp143I	GATC	2 cut(s)	127, 145
BspACI	CCGC	1 cut(s)	363
BspANI	GGCC	1 cut(s)	154
BspDI	ATCGAT	1 cut(s)	148
BspFNI	CGCG	1 cut(s)	339
BspLI	GGNNCC	2 cut(s)	129, 195
BspMI	ACCTGC	1 cut(s)	202
BspPI	GGATC	2 cut(s)	122, 135
BsrDI	GCAATG	1 cut(s)	182
BsrI	ACTGG	1 cut(s)	165
BssECI	CCNNGG	1 cut(s)	188
BssMI	GATC	2 cut(s)	127, 145
BssSI	CACGAG	1 cut(s)	109
BssT1I	CCWWGG	1 cut(s)	188
Bst2BI	CACGAG	1 cut(s)	109
BstC8I	GCNNGC	1 cut(s)	43
BstF5I	GGATG	1 cut(s)	355
BstFNI	CGCG	1 cut(s)	339
BstHHI	GCGC	1 cut(s)	339
BstKTI	GATC	2 cut(s)	130, 148
BstMBI	GATC	2 cut(s)	127, 145
BstMWI	GCNNNNNNNGC	1 cut(s)	193
BstSCI	CCNGG	2 cut(s)	130, 358
BstUI	CGCG	1 cut(s)	339
BstV1I	GCAGC	1 cut(s)	364
BstV2I	GAAGAC	1 cut(s)	300
BstX2I	RGATCY	1 cut(s)	127
BstYI	RGATCY	1 cut(s)	127
Bsu15I	ATCGAT	1 cut(s)	148
BsuRI	GGCC	1 cut(s)	154
BsuTUI	ATCGAT	1 cut(s)	148
BtsCI	GGATG	1 cut(s)	355
BveI	ACCTGC	1 cut(s)	202
Cac8I	GCNNGC	1 cut(s)	43
CfoI	GCGC	1 cut(s)	339
Cfr13I	GGNCC	1 cut(s)	243
ClaI	ATCGAT	1 cut(s)	148
CseI	GACGC	1 cut(s)	217
CviJI	RGCY	4 cut(s)	154, 196, 254, 377
CviKI_1	RGCY	4 cut(s)	154, 196, 254, 377
DpnI	GATC	2 cut(s)	129, 147
DpnII	GATC	2 cut(s)	127, 145
Eco130I	CCWWGG	1 cut(s)	188
Eco24I	GRGCYC	1 cut(s)	198
Eco47I	GGWCC	1 cut(s)	243
EcoT14I	CCWWGG	1 cut(s)	188
EcoT38I	GRGCYC	1 cut(s)	198
ErhI	CCWWGG	1 cut(s)	188
FaqI	GGGAC	1 cut(s)	220
FblI	GTMKAC	1 cut(s)	285
Fnu4HI	GCNGC	2 cut(s)	364, 378
FokI	GGATG	1 cut(s)	342
FriOI	GRGCYC	1 cut(s)	198
Fsp4HI	GCNGC	2 cut(s)	364, 378
GlaI	GCGC	1 cut(s)	338
GluI	GCNGC	2 cut(s)	364, 378
HaeIII	GGCC	1 cut(s)	154
HapII	CCGG	3 cut(s)	131, 251, 360
HgaI	GACGC	1 cut(s)	217
HhaI	GCGC	1 cut(s)	339
Hin6I	GCGC	1 cut(s)	337
HinP1I	GCGC	1 cut(s)	337
HinfI	GANTC	1 cut(s)	386
HpaII	CCGG	3 cut(s)	131, 251, 360
Hpy166II	GTNNAC	3 cut(s)	121, 234, 286
Hpy188I	TCNGA	1 cut(s)	90
Hpy188III	TCNNGA	2 cut(s)	109, 383
Hpy8I	GTNNAC	3 cut(s)	121, 234, 286
Hpy99I	CGWCG	1 cut(s)	329
HpyCH4V	TGCA	2 cut(s)	99, 311
HpyF10VI	GCNNNNNNNGC	1 cut(s)	193
HspAI	GCGC	1 cut(s)	337
Kzo9I	GATC	2 cut(s)	127, 145
LmnI	GCTCC	1 cut(s)	193
LpnPI	CCDG	7 cut(s)	144, 146, 168, 197, 251, 264, 373
Lsp1109I	GCAGC	1 cut(s)	364
LweI	GCATC	2 cut(s)	36, 298
MaeIII	GTNAC	1 cut(s)	171
MalI	GATC	2 cut(s)	129, 147
MboI	GATC	2 cut(s)	127, 145
MboII	GAAGA	1 cut(s)	305
MflI	RGATCY	1 cut(s)	127
MhlI	GDGCHC	1 cut(s)	198
MluCI	AATT	2 cut(s)	270, 391
MnlI	CCTC	2 cut(s)	217, 334
MseI	TTAA	1 cut(s)	273
MspI	CCGG	3 cut(s)	131, 251, 360
MspR9I	CCNGG	2 cut(s)	132, 360
MvnI	CGCG	1 cut(s)	339
MwoI	GCNNNNNNNGC	1 cut(s)	193
NciI	CCSGG	2 cut(s)	132, 360
NdeII	GATC	2 cut(s)	127, 145
NlaIV	GGNNCC	2 cut(s)	129, 195
PaqCI	CACCTGC	1 cut(s)	202
PfeI	GAWTC	1 cut(s)	386
PkrI	GCNGC	2 cut(s)	365, 379
PspN4I	GGNNCC	2 cut(s)	129, 195
PspPI	GGNCC	1 cut(s)	243
PsuI	RGATCY	1 cut(s)	127
SaqAI	TTAA	1 cut(s)	273
SatI	GCNGC	2 cut(s)	364, 378
Sau3AI	GATC	2 cut(s)	127, 145
Sau96I	GGNCC	1 cut(s)	243
ScrFI	CCNGG	2 cut(s)	132, 360
SduI	GDGCHC	1 cut(s)	198
SetI	ASST	5 cut(s)	97, 216, 245, 345, 379
SfaNI	GCATC	2 cut(s)	36, 298
SinI	GGWCC	1 cut(s)	243
Sse9I	AATT	2 cut(s)	270, 391
SsiI	CCGC	1 cut(s)	363
StyD4I	CCNGG	2 cut(s)	130, 358
StyI	CCWWGG	1 cut(s)	188
TaqI	TCGA	3 cut(s)	68, 148, 384
TasI	AATT	2 cut(s)	270, 391
TauI	GCSGC	1 cut(s)	366
TfiI	GAWTC	1 cut(s)	386
Tru1I	TTAA	1 cut(s)	273
Tru9I	TTAA	1 cut(s)	273
TseI	GCWGC	1 cut(s)	377
TspDTI	ATGAA	1 cut(s)	54
VpaK11BI	GGWCC	1 cut(s)	243
XmiI	GTMKAC	1 cut(s)	285

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.