Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0007689

Physical Location & Seq

Genomic Coordinates Forward (+)

56827440 .. 56829441

Gene Structure 2002 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG344300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGATTCGGGTCAGGGACTCGGGTTGTAGCGCTTATACGAGTTTTGTGAATTTGGATCCGGTTTTGCCCGTGAACCGGTGGCCCGAACCGGGAGTGGAGATACAGTGGGTGGCGCCGAGGGAGCCGGTGTGTACTGCGCAGTCTGATTGTGACGGGAAGTCTGTGTGTGGATCCGACCCGGTTCAGAATGGGGTGCGGAGGTGCTTCTGTAACTCCGGGTTTACGTGGGACCCGGTTTCAGGGTTTTGCGTTGATGATAGTGTTGGTTCAAGGGACAGGACTGGACTTATAGCAGGTTTGACTTCTGGCATTGGCGCATCACTACTTGCAGCCATCATTGCCATTGTACTTTACAAGCGCCACAGGCGCATCAAAGAAGCTCAAGACCGCCTGACCAAAGAGCGTGAAGCAATCCTAAATGCCAATGGAGGCAGAGCAGCAAAAAAAGCTATAGACTTCAACAGGGACCCTGATGATGTGAACCTTGCAGTTTATGTGCAGAGGCTGATGGCGGAAGAGAAGTTAATGGATGCGATTGATCCAATGCTGAAAGAAGGAGCTACAGCTTTGGAGCTGGACACCATGAAGGCATTGGGGTTCTTGGCATTGGGTTGCTTAGAGGAACGCAGACAGAATAGGCCTTCGATGAAAGAAGTTGTGGAGGAGATTGAGTACATTACAAGCATTGCCACAGCAAAGGTCGACGACGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GUB_WAK_bind Pkinase Pkinase_Tyr

Protein Analysis

237

Amino Acids

26.02

Weight (kDa)

5.06

Isoelectric Point (pI)

38.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007689)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02070
fragaria_vesca	FvH4_7g23160 FvH4_7g23250 FvH4_7g23370
malus_domestica	MD01G1139800.v1.1
prunus_persica	Prupe.2G240400_v2.0.a1 Prupe.6G261200_v2.0.a1
pyrus_communis	pycom01g16030 pycom08g15310
rosa_chinensis	RchiOBHm_Chr1g0368501 RchiOBHm_Chr3g0483591
rosa_laevigata	RLG00000027208
rosa_multiflora	Rmu_co8210558.1_g000001 Rmu_co8455625.1_g000001 Rmu_sc0006908.1_g000003 Rmu_sc0011394.1_g000011
rosa_roxburghii	Rroxscaffold_4G00288490
rosa_rugosa	Rorug01G0342300.1
rosa_samantha	Rh1AG349700 Rh1BG312700 Rh1BG312800 Rh1CG327600 Rh1DG344200 Rh1DG344300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	138
Acc36I	ACCTGC	1 cut(s)	284
AccB1I	GGYRCC	1 cut(s)	112
AccI	GTMKAC	1 cut(s)	702
AciI	CCGC	3 cut(s)	196, 388, 512
AclWI	GGATC	5 cut(s)	50, 63, 165, 178, 533
AcsI	RAATTY	1 cut(s)	49
AcyI	GRCGYC	1 cut(s)	113
AfaI	GTAC	3 cut(s)	133, 348, 674
AfeI	AGCGCT	1 cut(s)	31
AfiI	CCNNNNNNNGG	3 cut(s)	75, 89, 239
AgeI	ACCGGT	1 cut(s)	75
AgsI	TTSAA	2 cut(s)	270, 460
AhdI	GACNNNNNGTC	1 cut(s)	157
AluBI	AGCT	5 cut(s)	380, 449, 560, 566, 574
AluI	AGCT	5 cut(s)	380, 449, 560, 566, 574
AlwI	GGATC	5 cut(s)	50, 63, 165, 178, 533
AlwNI	CAGNNNCTG	1 cut(s)	505
Ama87I	CYCGRG	1 cut(s)	19
Aor51HI	AGCGCT	1 cut(s)	31
AoxI	GGCC	2 cut(s)	80, 638
ApeKI	GCWGC	2 cut(s)	329, 437
ApoI	RAATTY	1 cut(s)	49
AsiGI	ACCGGT	1 cut(s)	75
AspLEI	GCGC	6 cut(s)	32, 115, 139, 317, 360, 369
AspS9I	GGNCC	3 cut(s)	81, 229, 466
AsuC2I	CCSGG	4 cut(s)	90, 179, 217, 233
AvaI	CYCGRG	1 cut(s)	19
AvaII	GGWCC	2 cut(s)	229, 466
BamHI	GGATCC	2 cut(s)	55, 170
BanI	GGYRCC	1 cut(s)	112
BbvI	GCAGC	2 cut(s)	341, 449
BccI	CCATC	2 cut(s)	341, 502
BcnI	CCSGG	4 cut(s)	90, 179, 217, 233
BfmI	CTRYAG	2 cut(s)	450, 561
BfoI	RGCGCY	3 cut(s)	33, 116, 361
BfuAI	ACCTGC	1 cut(s)	284
BisI	GCNGC	2 cut(s)	330, 438
BlsI	GCNGC	2 cut(s)	331, 439
Bme1390I	CCNGG	4 cut(s)	90, 179, 217, 233
Bme18I	GGWCC	2 cut(s)	229, 466
BmeRI	GACNNNNNGTC	1 cut(s)	157
BmeT110I	CYCGRG	1 cut(s)	19
BmgT120I	GGNCC	3 cut(s)	81, 229, 466
BmiI	GGNNCC	8 cut(s)	57, 114, 123, 172, 230, 231, 467, 468
BmrFI	CCNGG	4 cut(s)	90, 179, 217, 233
BmsI	GCATC	3 cut(s)	326, 378, 520
BpuEI	CTTGAG	1 cut(s)	366
BpuMI	CCSGG	4 cut(s)	90, 179, 217, 233
BsaAI	YACGTR	1 cut(s)	225
BsaHI	GRCGYC	1 cut(s)	113
BsaJI	CCNNGG	1 cut(s)	116
BsaWI	WCCGGW	2 cut(s)	58, 75
BsaXI	ACNNNNNCTCC	6 cut(s)	89, 113, 119, 143, 656, 686
Bsc4I	CCNNNNNNNGG	3 cut(s)	75, 89, 239
Bse118I	RCCGGY	2 cut(s)	75, 124
Bse1I	ACTGG	1 cut(s)	286
Bse3DI	GCAATG	2 cut(s)	336, 684
BseDI	CCNNGG	1 cut(s)	116
BseGI	GGATG	1 cut(s)	535
BseLI	CCNNNNNNNGG	3 cut(s)	75, 89, 239
BseMI	GCAATG	2 cut(s)	336, 684
BseNI	ACTGG	1 cut(s)	286
BseRI	GAGGAG	1 cut(s)	677
BseXI	GCAGC	2 cut(s)	341, 449
BsgI	GTGCAG	1 cut(s)	518
BshFI	GGCC	2 cut(s)	82, 640
BshNI	GGYRCC	1 cut(s)	112
BshTI	ACCGGT	1 cut(s)	75
BsiHKCI	CYCGRG	1 cut(s)	19
BsiSI	CCGG	7 cut(s)	59, 76, 89, 125, 179, 216, 233
BslFI	GGGAC	4 cut(s)	29, 242, 287, 479
BslI	CCNNNNNNNGG	3 cut(s)	75, 89, 239
BsmFI	GGGAC	4 cut(s)	29, 242, 287, 479
BsnI	GGCC	2 cut(s)	82, 640
BsoBI	CYCGRG	1 cut(s)	19
Bsp143I	GATC	3 cut(s)	55, 170, 538
BspACI	CCGC	3 cut(s)	196, 388, 512
BspANI	GGCC	2 cut(s)	82, 640
BspLI	GGNNCC	8 cut(s)	57, 114, 123, 172, 230, 231, 467, 468
BspMI	ACCTGC	1 cut(s)	284
BspPI	GGATC	5 cut(s)	50, 63, 165, 178, 533
BspT107I	GGYRCC	1 cut(s)	112
BsrDI	GCAATG	2 cut(s)	336, 684
BsrFI	RCCGGY	2 cut(s)	75, 124
BsrI	ACTGG	1 cut(s)	286
BssAI	RCCGGY	2 cut(s)	75, 124
BssECI	CCNNGG	1 cut(s)	116
BssMI	GATC	3 cut(s)	55, 170, 538
BssNI	GRCGYC	1 cut(s)	113
Bst4CI	ACNGT	1 cut(s)	105
Bst6I	CTCTTC	1 cut(s)	510
BstACI	GRCGYC	1 cut(s)	113
BstBAI	YACGTR	1 cut(s)	225
BstDEI	CTNAG	1 cut(s)	616
BstF5I	GGATG	1 cut(s)	535
BstH2I	RGCGCY	3 cut(s)	33, 116, 361
BstHHI	GCGC	6 cut(s)	32, 115, 139, 317, 360, 369
BstKTI	GATC	3 cut(s)	58, 173, 541
BstMBI	GATC	3 cut(s)	55, 170, 538
BstMWI	GCNNNNNNNGC	5 cut(s)	121, 338, 364, 366, 446
BstSCI	CCNGG	4 cut(s)	88, 177, 215, 231
BstSFI	CTRYAG	2 cut(s)	450, 561
BstV1I	GCAGC	2 cut(s)	341, 449
BstX2I	RGATCY	2 cut(s)	55, 170
BstYI	RGATCY	2 cut(s)	55, 170
BsuRI	GGCC	2 cut(s)	82, 640
BtsCI	GGATG	1 cut(s)	535
BtsIMutI	CAGTG	1 cut(s)	110
BveI	ACCTGC	1 cut(s)	284
CaiI	CAGNNNCTG	1 cut(s)	505
CfoI	GCGC	6 cut(s)	32, 115, 139, 317, 360, 369
Cfr10I	RCCGGY	2 cut(s)	75, 124
Cfr13I	GGNCC	3 cut(s)	81, 229, 466
Csp6I	GTAC	3 cut(s)	132, 347, 673
CspAI	ACCGGT	1 cut(s)	75
CviAII	CATG	1 cut(s)	583
CviQI	GTAC	3 cut(s)	132, 347, 673
DdeI	CTNAG	1 cut(s)	616
DinI	GGCGCC	1 cut(s)	114
DpnI	GATC	3 cut(s)	57, 172, 540
DpnII	GATC	3 cut(s)	55, 170, 538
DriI	GACNNNNNGTC	1 cut(s)	157
Eam1104I	CTCTTC	1 cut(s)	510
Eam1105I	GACNNNNNGTC	1 cut(s)	157
EarI	CTCTTC	1 cut(s)	510
EciI	GGCGGA	1 cut(s)	527
Eco147I	AGGCCT	1 cut(s)	640
Eco47I	GGWCC	2 cut(s)	229, 466
Eco47III	AGCGCT	1 cut(s)	31
Eco88I	CYCGRG	1 cut(s)	19
EcoO109I	RGGNCCY	2 cut(s)	229, 466
EgeI	GGCGCC	1 cut(s)	114
EheI	GGCGCC	1 cut(s)	114
FaeI	CATG	1 cut(s)	586
FaiI	YATR	5 cut(s)	36, 290, 452, 495, 584
FaqI	GGGAC	4 cut(s)	29, 242, 287, 479
FatI	CATG	1 cut(s)	582
FblI	GTMKAC	1 cut(s)	702
Fnu4HI	GCNGC	2 cut(s)	330, 438
FokI	GGATG	1 cut(s)	542
Fsp4HI	GCNGC	2 cut(s)	330, 438
FspI	TGCGCA	1 cut(s)	138
GlaI	GCGC	6 cut(s)	31, 114, 138, 316, 359, 368
GluI	GCNGC	2 cut(s)	330, 438
HaeII	RGCGCY	3 cut(s)	33, 116, 361
HaeIII	GGCC	2 cut(s)	82, 640
HapII	CCGG	7 cut(s)	59, 76, 89, 125, 179, 216, 233
HhaI	GCGC	6 cut(s)	32, 115, 139, 317, 360, 369
Hin1I	GRCGYC	1 cut(s)	113
Hin1II	CATG	1 cut(s)	586
Hin6I	GCGC	6 cut(s)	30, 113, 137, 315, 358, 367
HinP1I	GCGC	6 cut(s)	30, 113, 137, 315, 358, 367
HincII	GTYRAC	1 cut(s)	703
HindII	GTYRAC	1 cut(s)	703
HinfI	GANTC	2 cut(s)	4, 17
HpaII	CCGG	7 cut(s)	59, 76, 89, 125, 179, 216, 233
Hpy166II	GTNNAC	5 cut(s)	73, 132, 222, 481, 703
Hpy188I	TCNGA	3 cut(s)	145, 175, 186
Hpy188III	TCNNGA	1 cut(s)	383
Hpy8I	GTNNAC	5 cut(s)	73, 132, 222, 481, 703
Hpy99I	CGWCG	2 cut(s)	707, 710
HpyAV	CCTTC	3 cut(s)	548, 580, 651
HpyCH4III	ACNGT	1 cut(s)	105
HpyCH4IV	ACGT	1 cut(s)	224
HpyCH4V	TGCA	3 cut(s)	329, 488, 499
HpyF10VI	GCNNNNNNNGC	5 cut(s)	121, 338, 364, 366, 446
HpyF3I	CTNAG	1 cut(s)	616
HpySE526I	ACGT	1 cut(s)	224
Hsp92I	GRCGYC	1 cut(s)	113
Hsp92II	CATG	1 cut(s)	586
HspAI	GCGC	6 cut(s)	30, 113, 137, 315, 358, 367
KasI	GGCGCC	1 cut(s)	112
KflI	GGGWCCC	2 cut(s)	229, 466
Kzo9I	GATC	3 cut(s)	55, 170, 538
LmnI	GCTCC	3 cut(s)	121, 557, 571
Lsp1109I	GCAGC	2 cut(s)	341, 449
LweI	GCATC	3 cut(s)	326, 378, 520
MaeII	ACGT	1 cut(s)	224
MaeIII	GTNAC	2 cut(s)	149, 209
MalI	GATC	3 cut(s)	57, 172, 540
MboI	GATC	3 cut(s)	55, 170, 538
MboII	GAAGA	1 cut(s)	527
MflI	RGATCY	2 cut(s)	55, 170
MluCI	AATT	1 cut(s)	49
Mly113I	GGCGCC	1 cut(s)	113
MlyI	GAGTC	1 cut(s)	11
MmeI	TCCRAC	1 cut(s)	198
MnlI	CCTC	6 cut(s)	111, 192, 422, 495, 613, 655
MseI	TTAA	1 cut(s)	524
MspI	CCGG	7 cut(s)	59, 76, 89, 125, 179, 216, 233
MspR9I	CCNGG	4 cut(s)	90, 179, 217, 233
MwoI	GCNNNNNNNGC	5 cut(s)	121, 338, 364, 366, 446
NarI	GGCGCC	1 cut(s)	113
NciI	CCSGG	4 cut(s)	90, 179, 217, 233
NdeII	GATC	3 cut(s)	55, 170, 538
NlaIII	CATG	1 cut(s)	586
NlaIV	GGNNCC	8 cut(s)	57, 114, 123, 172, 230, 231, 467, 468
NmeAIII	GCCGAG	1 cut(s)	141
NmuCI	GTSAC	1 cut(s)	149
NsbI	TGCGCA	1 cut(s)	138
PceI	AGGCCT	1 cut(s)	640
PfeI	GAWTC	1 cut(s)	4
PinAI	ACCGGT	1 cut(s)	75
PkrI	GCNGC	2 cut(s)	331, 439
PleI	GAGTC	1 cut(s)	11
PluTI	GGCGCC	1 cut(s)	116
PpsI	GAGTC	1 cut(s)	11
Ppu21I	YACGTR	1 cut(s)	225
PpuMI	RGGWCCY	2 cut(s)	229, 466
Psp5II	RGGWCCY	2 cut(s)	229, 466
PspN4I	GGNNCC	8 cut(s)	57, 114, 123, 172, 230, 231, 467, 468
PspPI	GGNCC	3 cut(s)	81, 229, 466
PspPPI	RGGWCCY	2 cut(s)	229, 466
PstNI	CAGNNNCTG	1 cut(s)	505
PsuI	RGATCY	2 cut(s)	55, 170
RsaI	GTAC	3 cut(s)	133, 348, 674
RsaNI	GTAC	3 cut(s)	132, 347, 673
SalI	GTCGAC	1 cut(s)	701
SaqAI	TTAA	1 cut(s)	524
SatI	GCNGC	2 cut(s)	330, 438
Sau3AI	GATC	3 cut(s)	55, 170, 538
Sau96I	GGNCC	3 cut(s)	81, 229, 466
SchI	GAGTC	1 cut(s)	11
ScrFI	CCNGG	4 cut(s)	90, 179, 217, 233
SfaNI	GCATC	3 cut(s)	326, 378, 520
SfcI	CTRYAG	2 cut(s)	450, 561
SfoI	GGCGCC	1 cut(s)	114
SinI	GGWCC	2 cut(s)	229, 466
SmlI	CTYRAG	1 cut(s)	381
SmoI	CTYRAG	1 cut(s)	381
Sse9I	AATT	1 cut(s)	49
SseBI	AGGCCT	1 cut(s)	640
SsiI	CCGC	3 cut(s)	196, 388, 512
SspDI	GGCGCC	1 cut(s)	112
StuI	AGGCCT	1 cut(s)	640
StyD4I	CCNGG	4 cut(s)	88, 177, 215, 231
TaaI	ACNGT	1 cut(s)	105
TaiI	ACGT	1 cut(s)	227
TaqI	TCGA	2 cut(s)	644, 702
TasI	AATT	1 cut(s)	49
TatI	WGTACW	3 cut(s)	131, 346, 672
TfiI	GAWTC	1 cut(s)	4
Tru1I	TTAA	1 cut(s)	524
Tru9I	TTAA	1 cut(s)	524
TscAI	CASTG	1 cut(s)	110
TseFI	GTSAC	1 cut(s)	149
TseI	GCWGC	2 cut(s)	329, 437
Tsp45I	GTSAC	1 cut(s)	149
TspDTI	ATGAA	2 cut(s)	599, 662
TspRI	CASTG	1 cut(s)	110
VpaK11BI	GGWCC	2 cut(s)	229, 466
XapI	RAATTY	1 cut(s)	49
XcmI	CCANNNNNNNNNTGG	1 cut(s)	589
XmiI	GTMKAC	1 cut(s)	702

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.