Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8210558.1

Orthogroup ID

OG0007689

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 725

Gene Structure 725 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8210558.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 725 bp

gctgtgaagatcgcgaagattggaaacacgaaaggcactgaccaagtcctcaatgaggtccgaattctgtgccaagttaaccacaggagtcttgtgcacttactcggttgttgtgtggagttagagcagcctattatggtttatgagtacattgagaatggaactctacttgagcatttccaagctcgaaaaggtgttggtcgaacacctctctcgtggactcaacgtctccaaattgctcatgacactgctgagggtcttgcttatctccacttctcagctgtccctccaatttatcaccgtgacgtgaagtctagtaacattcttcttgataacaaattgaatgccaaggttgctgattttggactatcacgattggctcatactgatatgagtcacatttcaacatgtgctcagggaactcttggataccttgatcctgaatattacagaaattatcaattgactgataagagtgatgtctacagctttggtgtggtgctgttggagctgatgtcctcgcagaaagctatagacttcaacagggaccccgatgatgtgaaccttgcagtttatgtgcagaggctgatggcggaagagaagttaatggatgcgattgatccaatgctgaaagaaggagctacagctttggagctggacaccatgaaggcattggggttcttggcattgggttgcttagaggaacgcagacagaataggccttc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GUB_WAK_bind Pkinase Pkinase_Tyr

Protein Analysis

242

Amino Acids

27.2

Weight (kDa)

5.76

Isoelectric Point (pI)

26.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007689)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02070
fragaria_vesca	FvH4_7g23160 FvH4_7g23250 FvH4_7g23370
malus_domestica	MD01G1139800.v1.1
prunus_persica	Prupe.2G240400_v2.0.a1 Prupe.6G261200_v2.0.a1
pyrus_communis	pycom01g16030 pycom08g15310
rosa_chinensis	RchiOBHm_Chr1g0368501 RchiOBHm_Chr3g0483591
rosa_laevigata	RLG00000027208
rosa_multiflora	Rmu_co8210558.1_g000001 Rmu_co8455625.1_g000001 Rmu_sc0006908.1_g000003 Rmu_sc0011394.1_g000011
rosa_roxburghii	Rroxscaffold_4G00288490
rosa_rugosa	Rorug01G0342300.1
rosa_samantha	Rh1AG349700 Rh1BG312700 Rh1BG312800 Rh1CG327600 Rh1DG344200 Rh1DG344300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	483
AccII	CGCG	1 cut(s)	14
AciI	CCGC	1 cut(s)	593
AclWI	GGATC	2 cut(s)	431, 614
AcsI	RAATTY	1 cut(s)	63
AfaI	GTAC	1 cut(s)	149
AfiI	CCNNNNNNNGG	1 cut(s)	55
AflIII	ACRYGT	1 cut(s)	407
AgsI	TTSAA	3 cut(s)	343, 405, 541
AhdI	GACNNNNNGTC	2 cut(s)	225, 310
AjiI	CACGTC	1 cut(s)	307
AluBI	AGCT	8 cut(s)	185, 281, 489, 511, 530, 641, 647, 655
AluI	AGCT	8 cut(s)	185, 281, 489, 511, 530, 641, 647, 655
Alw21I	GWGCWC	2 cut(s)	99, 415
Alw26I	GTCTC	1 cut(s)	233
Alw44I	GTGCAC	1 cut(s)	95
AlwI	GGATC	2 cut(s)	431, 614
AlwNI	CAGNNNCTG	1 cut(s)	586
AoxI	GGCC	1 cut(s)	719
ApaLI	GTGCAC	1 cut(s)	95
ApeKI	GCWGC	1 cut(s)	127
ApoI	RAATTY	1 cut(s)	63
AspS9I	GGNCC	2 cut(s)	58, 547
AsuHPI	GGTGA	1 cut(s)	290
AvaII	GGWCC	2 cut(s)	58, 547
BaeGI	GKGCMC	1 cut(s)	99
BauI	CACGAG	1 cut(s)	214
Bbv12I	GWGCWC	2 cut(s)	99, 415
BbvCI	CCTCAGC	1 cut(s)	252
BbvI	GCAGC	1 cut(s)	139
BccI	CCATC	1 cut(s)	583
BcgI	CGANNNNNNTGC	2 cut(s)	51, 85
BciVI	GTATCC	1 cut(s)	422
BcoDI	GTCTC	1 cut(s)	233
BfaI	CTAG	1 cut(s)	315
BfmI	CTRYAG	3 cut(s)	484, 531, 642
BfuI	GTATCC	1 cut(s)	422
BisI	GCNGC	1 cut(s)	128
BlsI	GCNGC	1 cut(s)	129
Bme18I	GGWCC	2 cut(s)	58, 547
BmeRI	GACNNNNNGTC	2 cut(s)	225, 310
BmgBI	CACGTC	1 cut(s)	307
BmgT120I	GGNCC	2 cut(s)	58, 547
BmiI	GGNNCC	2 cut(s)	548, 549
BmsI	GCATC	1 cut(s)	601
Bpu10I	CCTNAGC	2 cut(s)	252, 414
BpuEI	CTTGAG	1 cut(s)	191
BsaJI	CCNNGG	1 cut(s)	348
BsaXI	ACNNNNNCTCC	2 cut(s)	500, 530
Bsc4I	CCNNNNNNNGG	1 cut(s)	55
BseDI	CCNNGG	1 cut(s)	348
BseGI	GGATG	1 cut(s)	616
BseLI	CCNNNNNNNGG	1 cut(s)	55
BseMII	CTCAG	3 cut(s)	243, 291, 428
BseSI	GKGCMC	1 cut(s)	99
BseXI	GCAGC	1 cut(s)	139
BsgI	GTGCAG	1 cut(s)	599
Bsh1236I	CGCG	1 cut(s)	14
BshFI	GGCC	1 cut(s)	721
BsiHKAI	GWGCWC	2 cut(s)	99, 415
BslFI	GGGAC	2 cut(s)	269, 560
BslI	CCNNNNNNNGG	1 cut(s)	55
BsmAI	GTCTC	1 cut(s)	233
BsmBI	CGTCTC	1 cut(s)	233
BsmFI	GGGAC	2 cut(s)	269, 560
BsmI	GAATGC	1 cut(s)	349
BsnI	GGCC	1 cut(s)	721
Bsp1286I	GDGCHC	2 cut(s)	99, 415
Bsp143I	GATC	3 cut(s)	9, 436, 619
Bsp68I	TCGCGA	1 cut(s)	14
BspACI	CCGC	1 cut(s)	593
BspANI	GGCC	1 cut(s)	721
BspCNI	CTCAG	3 cut(s)	244, 290, 427
BspFNI	CGCG	1 cut(s)	14
BspHI	TCATGA	1 cut(s)	241
BspLI	GGNNCC	2 cut(s)	548, 549
BspPI	GGATC	2 cut(s)	431, 614
BssECI	CCNNGG	1 cut(s)	348
BssMI	GATC	3 cut(s)	9, 436, 619
BssSI	CACGAG	1 cut(s)	214
BssT1I	CCWWGG	1 cut(s)	348
Bst2BI	CACGAG	1 cut(s)	214
Bst4CI	ACNGT	1 cut(s)	302
Bst6I	CTCTTC	1 cut(s)	591
BstDEI	CTNAG	4 cut(s)	252, 277, 414, 697
BstENI	CCTNNNNNAGG	1 cut(s)	53
BstF5I	GGATG	1 cut(s)	616
BstFNI	CGCG	1 cut(s)	14
BstKTI	GATC	3 cut(s)	12, 439, 622
BstMAI	GTCTC	1 cut(s)	233
BstMBI	GATC	3 cut(s)	9, 436, 619
BstMWI	GCNNNNNNNGC	2 cut(s)	353, 508
BstNSI	RCATGY	1 cut(s)	411
BstSFI	CTRYAG	3 cut(s)	484, 531, 642
BstSLI	GKGCMC	1 cut(s)	99
BstUI	CGCG	1 cut(s)	14
BstV1I	GCAGC	1 cut(s)	139
BsuI	GTATCC	1 cut(s)	422
BsuRI	GGCC	1 cut(s)	721
BtrI	CACGTC	1 cut(s)	307
BtsCI	GGATG	1 cut(s)	616
BtsI	GCAGTG	1 cut(s)	246
BtsIMutI	CAGTG	2 cut(s)	36, 246
BtuMI	TCGCGA	1 cut(s)	14
CaiI	CAGNNNCTG	1 cut(s)	586
CciI	TCATGA	1 cut(s)	241
Cfr13I	GGNCC	2 cut(s)	58, 547
Csp6I	GTAC	1 cut(s)	148
CviAII	CATG	3 cut(s)	242, 408, 664
CviQI	GTAC	1 cut(s)	148
DdeI	CTNAG	4 cut(s)	252, 277, 414, 697
DpnI	GATC	3 cut(s)	11, 438, 621
DpnII	GATC	3 cut(s)	9, 436, 619
DriI	GACNNNNNGTC	2 cut(s)	225, 310
Eam1104I	CTCTTC	1 cut(s)	591
Eam1105I	GACNNNNNGTC	2 cut(s)	225, 310
EarI	CTCTTC	1 cut(s)	591
EciI	GGCGGA	1 cut(s)	608
Eco130I	CCWWGG	1 cut(s)	348
Eco147I	AGGCCT	1 cut(s)	721
Eco47I	GGWCC	2 cut(s)	58, 547
EcoNI	CCTNNNNNAGG	1 cut(s)	53
EcoO109I	RGGNCCY	1 cut(s)	547
EcoRI	GAATTC	1 cut(s)	63
EcoT14I	CCWWGG	1 cut(s)	348
ErhI	CCWWGG	1 cut(s)	348
Esp3I	CGTCTC	1 cut(s)	233
FaeI	CATG	3 cut(s)	245, 411, 667
FaiI	YATR	9 cut(s)	137, 144, 243, 384, 392, 409, 533, 576, 665
FaqI	GGGAC	2 cut(s)	269, 560
FatI	CATG	3 cut(s)	241, 407, 663
FblI	GTMKAC	1 cut(s)	483
Fnu4HI	GCNGC	1 cut(s)	128
FokI	GGATG	1 cut(s)	623
Fsp4HI	GCNGC	1 cut(s)	128
FspBI	CTAG	1 cut(s)	315
GluI	GCNGC	1 cut(s)	128
HaeIII	GGCC	1 cut(s)	721
Hin1II	CATG	3 cut(s)	245, 411, 667
HincII	GTYRAC	1 cut(s)	79
HindII	GTYRAC	1 cut(s)	79
HinfI	GANTC	3 cut(s)	88, 220, 394
HpaI	GTTAAC	1 cut(s)	79
HphI	GGTGA	1 cut(s)	290
Hpy166II	GTNNAC	5 cut(s)	79, 97, 219, 484, 562
Hpy188I	TCNGA	1 cut(s)	62
Hpy188III	TCNNGA	5 cut(s)	13, 242, 329, 372, 440
Hpy8I	GTNNAC	5 cut(s)	79, 97, 219, 484, 562
HpyAV	CCTTC	2 cut(s)	629, 661
HpyCH4III	ACNGT	1 cut(s)	302
HpyCH4IV	ACGT	2 cut(s)	226, 306
HpyCH4V	TGCA	3 cut(s)	97, 569, 580
HpyF10VI	GCNNNNNNNGC	2 cut(s)	353, 508
HpyF3I	CTNAG	4 cut(s)	252, 277, 414, 697
HpySE526I	ACGT	2 cut(s)	226, 306
Hsp92II	CATG	3 cut(s)	245, 411, 667
KflI	GGGWCCC	1 cut(s)	547
KspAI	GTTAAC	1 cut(s)	79
Kzo9I	GATC	3 cut(s)	9, 436, 619
LmnI	GCTCC	3 cut(s)	508, 638, 652
LpnPI	CCDG	5 cut(s)	70, 401, 453, 529, 641
Lsp1109I	GCAGC	1 cut(s)	139
LweI	GCATC	1 cut(s)	601
MaeI	CTAG	1 cut(s)	315
MaeII	ACGT	2 cut(s)	226, 306
MaeIII	GTNAC	3 cut(s)	302, 317, 395
MalI	GATC	3 cut(s)	11, 438, 621
MboI	GATC	3 cut(s)	9, 436, 619
MboII	GAAGA	4 cut(s)	19, 28, 317, 608
MfeI	CAATTG	1 cut(s)	461
MhlI	GDGCHC	2 cut(s)	99, 415
MluCI	AATT	6 cut(s)	63, 234, 291, 338, 454, 461
MlyI	GAGTC	3 cut(s)	97, 214, 403
MmeI	TCCRAC	1 cut(s)	486
MnlI	CCTC	8 cut(s)	49, 59, 219, 247, 297, 529, 576, 694
MseI	TTAA	2 cut(s)	78, 605
MspA1I	CMGCKG	1 cut(s)	281
MunI	CAATTG	1 cut(s)	461
Mva1269I	GAATGC	1 cut(s)	349
MvnI	CGCG	1 cut(s)	14
MwoI	GCNNNNNNNGC	2 cut(s)	353, 508
NdeII	GATC	3 cut(s)	9, 436, 619
NlaIII	CATG	3 cut(s)	245, 411, 667
NlaIV	GGNNCC	2 cut(s)	548, 549
NmuCI	GTSAC	2 cut(s)	302, 395
NruI	TCGCGA	1 cut(s)	14
NspI	RCATGY	1 cut(s)	411
PagI	TCATGA	1 cut(s)	241
PceI	AGGCCT	1 cut(s)	721
PciI	ACATGT	1 cut(s)	407
PctI	GAATGC	1 cut(s)	349
PflFI	GACNNNGTC	1 cut(s)	44
PkrI	GCNGC	1 cut(s)	129
PleI	GAGTC	3 cut(s)	96, 214, 402
PpsI	GAGTC	3 cut(s)	96, 214, 402
PpuMI	RGGWCCY	1 cut(s)	547
PscI	ACATGT	1 cut(s)	407
Psp5II	RGGWCCY	1 cut(s)	547
PspN4I	GGNNCC	2 cut(s)	548, 549
PspPI	GGNCC	2 cut(s)	58, 547
PspPPI	RGGWCCY	1 cut(s)	547
PstNI	CAGNNNCTG	1 cut(s)	586
PsyI	GACNNNGTC	1 cut(s)	44
PvuII	CAGCTG	1 cut(s)	281
RruI	TCGCGA	1 cut(s)	14
RsaI	GTAC	1 cut(s)	149
RsaNI	GTAC	1 cut(s)	148
SaqAI	TTAA	2 cut(s)	78, 605
SatI	GCNGC	1 cut(s)	128
Sau3AI	GATC	3 cut(s)	9, 436, 619
Sau96I	GGNCC	2 cut(s)	58, 547
SchI	GAGTC	3 cut(s)	97, 214, 403
SduI	GDGCHC	2 cut(s)	99, 415
SfaNI	GCATC	1 cut(s)	601
SfcI	CTRYAG	3 cut(s)	484, 531, 642
SinI	GGWCC	2 cut(s)	58, 547
SmlI	CTYRAG	1 cut(s)	170
SmoI	CTYRAG	1 cut(s)	170
Sse9I	AATT	6 cut(s)	63, 234, 291, 338, 454, 461
SseBI	AGGCCT	1 cut(s)	721
SsiI	CCGC	1 cut(s)	593
SspI	AATATT	1 cut(s)	446
SspMI	CTAG	1 cut(s)	315
StuI	AGGCCT	1 cut(s)	721
StyI	CCWWGG	1 cut(s)	348
TaaI	ACNGT	1 cut(s)	302
TaiI	ACGT	2 cut(s)	229, 309
TaqI	TCGA	2 cut(s)	187, 202
TasI	AATT	6 cut(s)	63, 234, 291, 338, 454, 461
TatI	WGTACW	1 cut(s)	147
Tru1I	TTAA	2 cut(s)	78, 605
Tru9I	TTAA	2 cut(s)	78, 605
TscAI	CASTG	2 cut(s)	43, 253
TseFI	GTSAC	2 cut(s)	302, 395
TseI	GCWGC	1 cut(s)	127
Tsp45I	GTSAC	2 cut(s)	302, 395
TspDTI	ATGAA	1 cut(s)	680
TspRI	CASTG	2 cut(s)	43, 253
Tth111I	GACNNNGTC	1 cut(s)	44
VneI	GTGCAC	1 cut(s)	95
VpaK11BI	GGWCC	2 cut(s)	58, 547
XagI	CCTNNNNNAGG	1 cut(s)	53
XapI	RAATTY	1 cut(s)	63
XceI	RCATGY	1 cut(s)	411
XcmI	CCANNNNNNNNNTGG	1 cut(s)	670
XmiI	GTMKAC	1 cut(s)	483
XspI	CTAG	1 cut(s)	315

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.