Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8455625.1

Orthogroup ID

OG0007689

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 934

Gene Structure 933 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8455625.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 841 bp

atggccgttactcccaacctccgcctcttaacggcgtcgctgctgctcctttcgtgcgcgtggacctcactctccgtccagctctgcccaccctgcggcaacaccaccgtcccctaccctctcagcacctcccccacctgcggagaccagtcatacaagatccgctgcgccgcggcggcaggctccctcctcttcgacaccctcaacaactcgtacccgatcgcctccatctccccctccgcccaacgactcgtcgtacgcccctccagcttcgtgtcgtccaactcctgcgtcacgtcggatatcgtccaccagggaatccagctcaacgactccctccccttcaacgtcaccagtagcaacaccatcttgtacctcaactgtacggacactcttctccggtcgccgttgaactgcacgtcgtcgagtctgtgtcatacgtatgtgaacaatactaacgcggtcgggtcgtgccagagggctccgatttgctgtacgtttcgggcgggagggtcctcgacgtcgtatatgattcgggtcagggactcgggttgtagcgcttatacgagttttgtgaatttggatccggttttgcccgtgaaccggtggcccgaaccgggagtggagattcagtgggtggcgccgagggagccggtgtgtactgcgcagtcggattgtgacgggaagtctgtgtgtggatccgacccggttcagaatggggtgcggaggtgcttctgtaactccgggtttacgtgggacccggtttcagggttttgcgttgatgatagtgttggttcgaaggacaggactggacttatagcaggtaaatggttatctcatt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GUB_WAK_bind Pkinase Pkinase_Tyr

Protein Analysis

280

Amino Acids

29.9

Weight (kDa)

7.35

Isoelectric Point (pI)

49.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007689)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02070
fragaria_vesca	FvH4_7g23160 FvH4_7g23250 FvH4_7g23370
malus_domestica	MD01G1139800.v1.1
prunus_persica	Prupe.2G240400_v2.0.a1 Prupe.6G261200_v2.0.a1
pyrus_communis	pycom01g16030 pycom08g15310
rosa_chinensis	RchiOBHm_Chr1g0368501 RchiOBHm_Chr3g0483591
rosa_laevigata	RLG00000027208
rosa_multiflora	Rmu_co8210558.1_g000001 Rmu_co8455625.1_g000001 Rmu_sc0006908.1_g000003 Rmu_sc0011394.1_g000011
rosa_roxburghii	Rroxscaffold_4G00288490
rosa_rugosa	Rorug01G0342300.1
rosa_samantha	Rh1AG349700 Rh1BG312700 Rh1BG312800 Rh1CG327600 Rh1DG344200 Rh1DG344300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	146
AatII	GACGTC	1 cut(s)	524
Acc16I	TGCGCA	1 cut(s)	666
Acc36I	ACCTGC	2 cut(s)	146, 812
AccB1I	GGYRCC	1 cut(s)	640
AccII	CGCG	3 cut(s)	59, 173, 461
AclWI	GGATC	5 cut(s)	154, 578, 591, 693, 706
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	577
AcyI	GRCGYC	3 cut(s)	35, 521, 641
AfaI	GTAC	6 cut(s)	215, 258, 374, 385, 496, 661
AfeI	AGCGCT	1 cut(s)	559
AfiI	CCNNNNNNNGG	6 cut(s)	31, 95, 140, 603, 617, 767
AgeI	ACCGGT	1 cut(s)	603
AgsI	TTSAA	2 cut(s)	346, 412
AhdI	GACNNNNNGTC	1 cut(s)	685
AjiI	CACGTC	2 cut(s)	297, 420
AjnI	CCWGG	1 cut(s)	312
AluBI	AGCT	3 cut(s)	82, 270, 325
AluI	AGCT	3 cut(s)	82, 270, 325
Alw26I	GTCTC	1 cut(s)	138
AlwI	GGATC	5 cut(s)	154, 578, 591, 693, 706
Ama87I	CYCGRG	1 cut(s)	547
Aor51HI	AGCGCT	1 cut(s)	559
AoxI	GGCC	2 cut(s)	3, 608
ApeKI	GCWGC	3 cut(s)	40, 43, 165
ApoI	RAATTY	1 cut(s)	577
AsiGI	ACCGGT	1 cut(s)	603
AspLEI	GCGC	5 cut(s)	59, 170, 560, 643, 667
AspS9I	GGNCC	4 cut(s)	63, 513, 609, 757
AsuC2I	CCSGG	4 cut(s)	618, 707, 745, 761
AsuHPI	GGTGA	1 cut(s)	343
AsuII	TTCGAA	1 cut(s)	797
AvaI	CYCGRG	1 cut(s)	547
AvaII	GGWCC	3 cut(s)	63, 513, 757
BamHI	GGATCC	2 cut(s)	583, 698
BanI	GGYRCC	1 cut(s)	640
BanII	GRGCYC	1 cut(s)	484
BbvI	GCAGC	3 cut(s)	27, 30, 152
BccI	CCATC	2 cut(s)	236, 374
BceAI	ACGGC	2 cut(s)	48, 391
BciT130I	CCWGG	1 cut(s)	314
BcnI	CCSGG	4 cut(s)	618, 707, 745, 761
BcoDI	GTCTC	1 cut(s)	138
BfoI	RGCGCY	2 cut(s)	561, 644
BfuAI	ACCTGC	2 cut(s)	146, 812
BglI	GCCNNNNNGGC	1 cut(s)	176
BisI	GCNGC	7 cut(s)	41, 44, 97, 166, 171, 174, 177
BlsI	GCNGC	7 cut(s)	42, 45, 98, 167, 172, 175, 178
Bme1390I	CCNGG	5 cut(s)	314, 618, 707, 745, 761
Bme18I	GGWCC	3 cut(s)	63, 513, 757
BmeRI	GACNNNNNGTC	1 cut(s)	685
BmeT110I	CYCGRG	1 cut(s)	547
BmgBI	CACGTC	2 cut(s)	297, 420
BmgT120I	GGNCC	4 cut(s)	63, 513, 609, 757
BmiI	GGNNCC	9 cut(s)	184, 483, 514, 585, 642, 651, 700, 758, 759
BmrFI	CCNGG	5 cut(s)	314, 618, 707, 745, 761
BpmI	CTGGAG	1 cut(s)	250
Bpu14I	TTCGAA	1 cut(s)	797
BpuMI	CCSGG	4 cut(s)	618, 707, 745, 761
BsaAI	YACGTR	2 cut(s)	441, 753
BsaHI	GRCGYC	3 cut(s)	35, 521, 641
BsaI	GGTCTC	1 cut(s)	138
BsaJI	CCNNGG	3 cut(s)	171, 313, 644
BsaWI	WCCGGW	3 cut(s)	399, 586, 603
BsaXI	ACNNNNNCTCC	4 cut(s)	617, 641, 647, 671
Bsc4I	CCNNNNNNNGG	6 cut(s)	31, 95, 140, 603, 617, 767
Bse118I	RCCGGY	2 cut(s)	603, 652
Bse1I	ACTGG	3 cut(s)	148, 354, 814
BseBI	CCWGG	1 cut(s)	314
BseDI	CCNNGG	3 cut(s)	171, 313, 644
BseLI	CCNNNNNNNGG	6 cut(s)	31, 95, 140, 603, 617, 767
BseMII	CTCAG	1 cut(s)	136
BseNI	ACTGG	3 cut(s)	148, 354, 814
BseRI	GAGGAG	1 cut(s)	179
BseXI	GCAGC	3 cut(s)	27, 30, 152
BsgI	GTGCAG	1 cut(s)	400
Bsh1236I	CGCG	3 cut(s)	59, 173, 461
Bsh1285I	CGRYCG	3 cut(s)	222, 404, 465
BshFI	GGCC	2 cut(s)	5, 610
BshNI	GGYRCC	1 cut(s)	640
BshTI	ACCGGT	1 cut(s)	603
BsiEI	CGRYCG	3 cut(s)	222, 404, 465
BsiHKCI	CYCGRG	1 cut(s)	547
BsiSI	CCGG	8 cut(s)	400, 587, 604, 617, 653, 707, 744, 761
BsiWI	CGTACG	1 cut(s)	256
BslFI	GGGAC	3 cut(s)	95, 557, 770
BslI	CCNNNNNNNGG	6 cut(s)	31, 95, 140, 603, 617, 767
BsmAI	GTCTC	1 cut(s)	138
BsmFI	GGGAC	3 cut(s)	95, 557, 770
BsnI	GGCC	2 cut(s)	5, 610
Bso31I	GGTCTC	1 cut(s)	138
BsoBI	CYCGRG	1 cut(s)	547
Bsp119I	TTCGAA	1 cut(s)	797
Bsp1286I	GDGCHC	1 cut(s)	484
Bsp143I	GATC	4 cut(s)	159, 219, 583, 698
BspANI	GGCC	2 cut(s)	5, 610
BspCNI	CTCAG	1 cut(s)	135
BspFNI	CGCG	3 cut(s)	59, 173, 461
BspLI	GGNNCC	9 cut(s)	184, 483, 514, 585, 642, 651, 700, 758, 759
BspMI	ACCTGC	2 cut(s)	146, 812
BspPI	GGATC	5 cut(s)	154, 578, 591, 693, 706
BspT104I	TTCGAA	1 cut(s)	797
BspT107I	GGYRCC	1 cut(s)	640
BspTNI	GGTCTC	1 cut(s)	138
BsrFI	RCCGGY	2 cut(s)	603, 652
BsrI	ACTGG	3 cut(s)	148, 354, 814
BssAI	RCCGGY	2 cut(s)	603, 652
BssECI	CCNNGG	3 cut(s)	171, 313, 644
BssMI	GATC	4 cut(s)	159, 219, 583, 698
BssNI	GRCGYC	3 cut(s)	35, 521, 641
Bst2UI	CCWGG	1 cut(s)	314
Bst4CI	ACNGT	2 cut(s)	109, 383
Bst6I	CTCTTC	2 cut(s)	197, 399
BstACI	GRCGYC	3 cut(s)	35, 521, 641
BstBAI	YACGTR	2 cut(s)	441, 753
BstBI	TTCGAA	1 cut(s)	797
BstC8I	GCNNGC	1 cut(s)	181
BstDEI	CTNAG	1 cut(s)	122
BstDSI	CCRYGG	1 cut(s)	171
BstFNI	CGCG	3 cut(s)	59, 173, 461
BstH2I	RGCGCY	2 cut(s)	561, 644
BstHHI	GCGC	5 cut(s)	59, 170, 560, 643, 667
BstKTI	GATC	4 cut(s)	162, 222, 586, 701
BstMAI	GTCTC	1 cut(s)	138
BstMBI	GATC	4 cut(s)	159, 219, 583, 698
BstMCI	CGRYCG	3 cut(s)	222, 404, 465
BstMWI	GCNNNNNNNGC	4 cut(s)	93, 176, 267, 649
BstNI	CCWGG	1 cut(s)	314
BstSCI	CCNGG	5 cut(s)	312, 616, 705, 743, 759
BstSNI	TACGTA	1 cut(s)	441
BstUI	CGCG	3 cut(s)	59, 173, 461
BstV1I	GCAGC	3 cut(s)	27, 30, 152
BstX2I	RGATCY	3 cut(s)	159, 583, 698
BstYI	RGATCY	3 cut(s)	159, 583, 698
BsuRI	GGCC	2 cut(s)	5, 610
BtgI	CCRYGG	1 cut(s)	171
BtrI	CACGTC	2 cut(s)	297, 420
BtsIMutI	CAGTG	1 cut(s)	638
BveI	ACCTGC	2 cut(s)	146, 812
Cac8I	GCNNGC	1 cut(s)	181
CfoI	GCGC	5 cut(s)	59, 170, 560, 643, 667
Cfr10I	RCCGGY	2 cut(s)	603, 652
Cfr13I	GGNCC	4 cut(s)	63, 513, 609, 757
Cfr42I	CCGCGG	1 cut(s)	174
CseI	GACGC	2 cut(s)	24, 280
Csp6I	GTAC	6 cut(s)	214, 257, 373, 384, 495, 660
CspAI	ACCGGT	1 cut(s)	603
CviJI	RGCY	8 cut(s)	5, 82, 183, 270, 325, 482, 610, 652
CviKI_1	RGCY	8 cut(s)	5, 82, 183, 270, 325, 482, 610, 652
CviQI	GTAC	6 cut(s)	214, 257, 373, 384, 495, 660
DdeI	CTNAG	1 cut(s)	122
DinI	GGCGCC	1 cut(s)	642
DpnI	GATC	4 cut(s)	161, 221, 585, 700
DpnII	GATC	4 cut(s)	159, 219, 583, 698
DriI	GACNNNNNGTC	1 cut(s)	685
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	197, 399
Eam1105I	GACNNNNNGTC	1 cut(s)	685
EarI	CTCTTC	2 cut(s)	197, 399
EciI	GGCGGA	2 cut(s)	11, 229
Eco105I	TACGTA	1 cut(s)	441
Eco24I	GRGCYC	1 cut(s)	484
Eco31I	GGTCTC	1 cut(s)	138
Eco32I	GATATC	1 cut(s)	304
Eco47I	GGWCC	3 cut(s)	63, 513, 757
Eco47III	AGCGCT	1 cut(s)	559
Eco88I	CYCGRG	1 cut(s)	547
EcoO109I	RGGNCCY	2 cut(s)	513, 757
EcoRII	CCWGG	1 cut(s)	312
EcoRV	GATATC	1 cut(s)	304
EcoT38I	GRGCYC	1 cut(s)	484
EgeI	GGCGCC	1 cut(s)	642
EheI	GGCGCC	1 cut(s)	642
FaiI	YATR	7 cut(s)	154, 438, 444, 528, 530, 564, 818
FaqI	GGGAC	3 cut(s)	95, 557, 770
FauI	CCCGC	1 cut(s)	499
Fnu4HI	GCNGC	7 cut(s)	41, 44, 97, 166, 171, 174, 177
FriOI	GRGCYC	1 cut(s)	484
Fsp4HI	GCNGC	7 cut(s)	41, 44, 97, 166, 171, 174, 177
FspI	TGCGCA	1 cut(s)	666
GlaI	GCGC	5 cut(s)	58, 169, 559, 642, 666
GluI	GCNGC	7 cut(s)	41, 44, 97, 166, 171, 174, 177
GsuI	CTGGAG	1 cut(s)	250
HaeII	RGCGCY	2 cut(s)	561, 644
HaeIII	GGCC	2 cut(s)	5, 610
HapII	CCGG	8 cut(s)	400, 587, 604, 617, 653, 707, 744, 761
HgaI	GACGC	2 cut(s)	24, 280
HhaI	GCGC	5 cut(s)	59, 170, 560, 643, 667
Hin1I	GRCGYC	3 cut(s)	35, 521, 641
Hin6I	GCGC	5 cut(s)	57, 168, 558, 641, 665
HinP1I	GCGC	5 cut(s)	57, 168, 558, 641, 665
HinfI	GANTC	7 cut(s)	249, 318, 332, 427, 532, 545, 628
HpaII	CCGG	8 cut(s)	400, 587, 604, 617, 653, 707, 744, 761
HphI	GGTGA	1 cut(s)	343
Hpy166II	GTNNAC	6 cut(s)	63, 310, 448, 601, 660, 750
Hpy188I	TCNGA	5 cut(s)	301, 486, 673, 703, 714
Hpy8I	GTNNAC	6 cut(s)	63, 310, 448, 601, 660, 750
Hpy99I	CGWCG	7 cut(s)	40, 257, 301, 424, 427, 523, 526
HpyAV	CCTTC	2 cut(s)	352, 793
HpyCH4III	ACNGT	2 cut(s)	109, 383
HpyCH4IV	ACGT	7 cut(s)	296, 348, 419, 440, 497, 521, 752
HpyCH4V	TGCA	1 cut(s)	417
HpyF10VI	GCNNNNNNNGC	4 cut(s)	93, 176, 267, 649
HpyF3I	CTNAG	1 cut(s)	122
HpySE526I	ACGT	7 cut(s)	296, 348, 419, 440, 497, 521, 752
Hsp92I	GRCGYC	3 cut(s)	35, 521, 641
HspAI	GCGC	5 cut(s)	57, 168, 558, 641, 665
KasI	GGCGCC	1 cut(s)	640
KflI	GGGWCCC	1 cut(s)	757
KspI	CCGCGG	1 cut(s)	174
Kzo9I	GATC	4 cut(s)	159, 219, 583, 698
LmnI	GCTCC	4 cut(s)	51, 188, 487, 649
Lsp1109I	GCAGC	3 cut(s)	27, 30, 152
MaeII	ACGT	7 cut(s)	296, 348, 419, 440, 497, 521, 752
MaeIII	GTNAC	5 cut(s)	7, 292, 349, 677, 737
MalI	GATC	4 cut(s)	161, 221, 585, 700
MboI	GATC	4 cut(s)	159, 219, 583, 698
MboII	GAAGA	2 cut(s)	184, 386
MflI	RGATCY	3 cut(s)	159, 583, 698
MhlI	GDGCHC	1 cut(s)	484
MluCI	AATT	1 cut(s)	577
Mly113I	GGCGCC	1 cut(s)	641
MlyI	GAGTC	4 cut(s)	243, 326, 436, 539
MmeI	TCCRAC	4 cut(s)	279, 306, 651, 726
MseI	TTAA	1 cut(s)	29
MslI	CAYNNNNRTG	1 cut(s)	441
MspA1I	CMGCKG	2 cut(s)	165, 173
MspI	CCGG	8 cut(s)	400, 587, 604, 617, 653, 707, 744, 761
MspR9I	CCNGG	5 cut(s)	314, 618, 707, 745, 761
MvaI	CCWGG	1 cut(s)	314
MvnI	CGCG	3 cut(s)	59, 173, 461
MwoI	GCNNNNNNNGC	4 cut(s)	93, 176, 267, 649
NarI	GGCGCC	1 cut(s)	641
NciI	CCSGG	4 cut(s)	618, 707, 745, 761
NdeII	GATC	4 cut(s)	159, 219, 583, 698
NlaIV	GGNNCC	9 cut(s)	184, 483, 514, 585, 642, 651, 700, 758, 759
NmeAIII	GCCGAG	1 cut(s)	669
NmuCI	GTSAC	3 cut(s)	292, 349, 677
NsbI	TGCGCA	1 cut(s)	666
NspV	TTCGAA	1 cut(s)	797
PaqCI	CACCTGC	1 cut(s)	146
PfeI	GAWTC	3 cut(s)	318, 532, 628
Pfl23II	CGTACG	1 cut(s)	256
PinAI	ACCGGT	1 cut(s)	603
PkrI	GCNGC	7 cut(s)	42, 45, 98, 167, 172, 175, 178
Ple19I	CGATCG	1 cut(s)	222
PleI	GAGTC	4 cut(s)	243, 326, 435, 539
PluTI	GGCGCC	1 cut(s)	644
PpsI	GAGTC	4 cut(s)	243, 326, 435, 539
Ppu21I	YACGTR	2 cut(s)	441, 753
PpuMI	RGGWCCY	2 cut(s)	513, 757
Psp5II	RGGWCCY	2 cut(s)	513, 757
Psp6I	CCWGG	1 cut(s)	312
PspGI	CCWGG	1 cut(s)	312
PspLI	CGTACG	1 cut(s)	256
PspN4I	GGNNCC	9 cut(s)	184, 483, 514, 585, 642, 651, 700, 758, 759
PspPI	GGNCC	4 cut(s)	63, 513, 609, 757
PspPPI	RGGWCCY	2 cut(s)	513, 757
PsuI	RGATCY	3 cut(s)	159, 583, 698
PvuI	CGATCG	1 cut(s)	222
RsaI	GTAC	6 cut(s)	215, 258, 374, 385, 496, 661
RsaNI	GTAC	6 cut(s)	214, 257, 373, 384, 495, 660
RseI	CAYNNNNRTG	1 cut(s)	441
SacII	CCGCGG	1 cut(s)	174
SaqAI	TTAA	1 cut(s)	29
SatI	GCNGC	7 cut(s)	41, 44, 97, 166, 171, 174, 177
Sau3AI	GATC	4 cut(s)	159, 219, 583, 698
Sau96I	GGNCC	4 cut(s)	63, 513, 609, 757
SchI	GAGTC	4 cut(s)	243, 326, 436, 539
ScrFI	CCNGG	5 cut(s)	314, 618, 707, 745, 761
SduI	GDGCHC	1 cut(s)	484
SfoI	GGCGCC	1 cut(s)	642
Sfr303I	CCGCGG	1 cut(s)	174
SfuI	TTCGAA	1 cut(s)	797
SgrBI	CCGCGG	1 cut(s)	174
SinI	GGWCC	3 cut(s)	63, 513, 757
SmiMI	CAYNNNNRTG	1 cut(s)	441
SnaBI	TACGTA	1 cut(s)	441
Sse9I	AATT	1 cut(s)	577
SspDI	GGCGCC	1 cut(s)	640
StyD4I	CCNGG	5 cut(s)	312, 616, 705, 743, 759
TaaI	ACNGT	2 cut(s)	109, 383
TaiI	ACGT	7 cut(s)	299, 351, 422, 443, 500, 524, 755
TaqI	TCGA	4 cut(s)	195, 425, 518, 797
TasI	AATT	1 cut(s)	577
TatI	WGTACW	1 cut(s)	659
TauI	GCSGC	4 cut(s)	99, 173, 176, 179
TfiI	GAWTC	3 cut(s)	318, 532, 628
Tru1I	TTAA	1 cut(s)	29
Tru9I	TTAA	1 cut(s)	29
TscAI	CASTG	1 cut(s)	638
TseFI	GTSAC	3 cut(s)	292, 349, 677
TseI	GCWGC	3 cut(s)	40, 43, 165
Tsp45I	GTSAC	3 cut(s)	292, 349, 677
TspGWI	ACGGA	2 cut(s)	64, 401
TspRI	CASTG	1 cut(s)	638
VpaK11BI	GGWCC	3 cut(s)	63, 513, 757
XapI	RAATTY	1 cut(s)	577
ZraI	GACGTC	1 cut(s)	522

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.