Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0008714

Physical Location & Seq

Genomic Coordinates Forward (+)

18714407 .. 18718820

Gene Structure 4414 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g24220.t4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGAACTTATCCGCAAATTTCCGCGGGAATTTCGTCTCCATTTCTCAGTGCAGCTCCTGCTGCGATCTTCGGTTTCAGCCTTATCTTGCTTCTTCTGGTTCTTGGCCAAAACGGCGTCGTACGACCAGTGTCAACCTCCACCGCATTTCTAGAGGTGAATTGAGGTTTTTGAGGAAGCGAGAAGTGGGGTGTAGAGTTAGTGAGACGGAGAAGGAATCAGATGACAATAATGATGAGGAGAAAGAAGGTCATGAACATGAAAGTGGAGATTCCGATGAGGCCCAGCTCGATGCTCAGCCGATTGTTGCAAACCAAATAAACAATGAGGCTGAAACTAAGCCTCAAGAGGGTGTTCAGGATGCTGATAATGTAGAAGTTGCTAGTGGATCACCTCTGCCAGGTGTGAAGCCACAGCAGGGTGAATCAATCCGGATCCCAAAAGAAACACTTGAAATTCTCAAGAATCAAGTTTTTGGCTTTGATACTTTTTTCGTAACAGGCCAGGATCCCTATGAGGCTGGAGTATTGTTCAAAGGAAATCTGCGAGGGGAGGCTGCAAAAAGTTATGAAAAGATAACAAAGAGAATGAAGGATAAGTTTGGGGATGAGTACAAGCTTTTCCTTCTAGTCAATCCCGAGGATGATCAACCTGTGGCTGTTGTAGTTCCACGAAGGACATTGCAGCCAGAGACAACCGCCGTCCCGGAGTGGGTTGCAGCTGGTGCTTTTGGACTGGTCACATTGTTTACCTTACTACTTCGGAATGTTCCTGAATTGCAGGCCAATATATTGTCGGCTTTTGATAATGTTGAGCTGTTAAACAAAGGCTTACCTGGAGCCCTTGTAACTGCACTGGTTTTGGGGGTGCATGAGCTTGGCCACATTTTAGCTGCAAACAGCACTGGAATCAAGCTCGGAGTGCCATTCTTTGTTCCCAGTTGGCAGGCTCTTTTGGTACAATTACAAGAATTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

325

Amino Acids

35.79

Weight (kDa)

5.1

Isoelectric Point (pI)

44.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M50	PF02163	280 - 362	2.9e-07	Peptidase family M50

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008714)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05740 AT5G05740 AT5G05740
fragaria_vesca	FvH4_7g24220 FvH4_7g24220 FvH4_7g24220 FvH4_7g24220
malus_domestica	MD01G1149700.v1.1 MD07G1216000.v1.1 MD07G1216100.v1.1
prunus_persica	Prupe.2G248000_v2.0.a1
pyrus_communis	pycom01g16770 pycom07g19840
rosa_chinensis	RchiOBHm_Chr1g0369791
rosa_laevigata	RLG00000027105
rosa_multiflora	Rmu_sc0011225.1_g000001
rosa_roxburghii	Rroxscaffold_4G00287380
rosa_rugosa	Rorug01G0352400
rosa_samantha	Rh1AG360900 Rh1BG324600 Rh1CG337800 Rh1DG355000
rosa_wichuraiana	Rw1G031770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	24
AccIII	TCCGGA	1 cut(s)	429
AciI	CCGC	5 cut(s)	12, 22, 24, 142, 696
AclWI	GGATC	5 cut(s)	394, 427, 440, 500, 513
AcoI	YGGCCR	2 cut(s)	104, 877
AcsI	RAATTY	3 cut(s)	16, 28, 453
AcyI	GRCGYC	1 cut(s)	115
AfaI	GTAC	3 cut(s)	121, 611, 957
AfiI	CCNNNNNNNGG	4 cut(s)	347, 398, 416, 709
AgsI	TTSAA	2 cut(s)	452, 532
AjnI	CCWGG	3 cut(s)	397, 501, 832
AluBI	AGCT	8 cut(s)	54, 286, 616, 719, 814, 874, 890, 913
AluI	AGCT	8 cut(s)	54, 286, 616, 719, 814, 874, 890, 913
Alw26I	GTCTC	3 cut(s)	40, 197, 683
AlwI	GGATC	5 cut(s)	394, 427, 440, 500, 513
AlwNI	CAGNNNCTG	1 cut(s)	57
Ama87I	CYCGRG	1 cut(s)	635
Aor13HI	TCCGGA	1 cut(s)	429
AoxI	GGCC	5 cut(s)	104, 279, 499, 780, 877
ApeKI	GCWGC	6 cut(s)	51, 60, 554, 682, 716, 890
ApoI	RAATTY	3 cut(s)	16, 28, 453
AspS9I	GGNCC	1 cut(s)	280
AsuC2I	CCSGG	1 cut(s)	704
AsuHPI	GGTGA	3 cut(s)	167, 381, 431
AvaI	CYCGRG	1 cut(s)	635
BalI	TGGCCA	2 cut(s)	106, 879
BamHI	GGATCC	2 cut(s)	432, 505
BanII	GRGCYC	1 cut(s)	841
BbvI	GCAGC	6 cut(s)	47, 63, 541, 694, 728, 877
BceAI	ACGGC	2 cut(s)	128, 683
BciT130I	CCWGG	3 cut(s)	399, 503, 834
BclI	TGATCA	1 cut(s)	643
BcnI	CCSGG	1 cut(s)	704
BcoDI	GTCTC	3 cut(s)	40, 197, 683
BfaI	CTAG	3 cut(s)	150, 381, 626
BglI	GCCNNNNNGGC	1 cut(s)	112
BisI	GCNGC	6 cut(s)	52, 61, 555, 683, 717, 891
BlpI	GCTNAGC	1 cut(s)	294
BlsI	GCNGC	6 cut(s)	53, 62, 556, 684, 718, 892
Bme1390I	CCNGG	4 cut(s)	399, 503, 704, 834
BmeT110I	CYCGRG	1 cut(s)	635
BmgT120I	GGNCC	1 cut(s)	280
BmiI	GGNNCC	3 cut(s)	434, 507, 838
BmrFI	CCNGG	4 cut(s)	399, 503, 704, 834
BmrI	ACTGGG	1 cut(s)	930
BmsI	GCATC	2 cut(s)	280, 349
BmuI	ACTGGG	1 cut(s)	930
BoxI	GACNNNNGTC	1 cut(s)	128
BpmI	CTGGAG	2 cut(s)	540, 855
Bpu1102I	GCTNAGC	1 cut(s)	294
BpuEI	CTTGAG	2 cut(s)	327, 443
BpuMI	CCSGG	1 cut(s)	704
BsaHI	GRCGYC	1 cut(s)	115
BsaJI	CCNNGG	2 cut(s)	22, 636
BsaWI	WCCGGW	1 cut(s)	429
BsaXI	ACNNNNNCTCC	2 cut(s)	828, 858
Bsc4I	CCNNNNNNNGG	4 cut(s)	347, 398, 416, 709
Bse1I	ACTGG	5 cut(s)	126, 738, 858, 907, 936
Bse3DI	GCAATG	1 cut(s)	677
BseAI	TCCGGA	1 cut(s)	429
BseBI	CCWGG	3 cut(s)	399, 503, 834
BseDI	CCNNGG	2 cut(s)	22, 636
BseGI	GGATG	3 cut(s)	364, 610, 646
BseLI	CCNNNNNNNGG	4 cut(s)	347, 398, 416, 709
BseMI	GCAATG	1 cut(s)	677
BseMII	CTCAG	2 cut(s)	59, 308
BseNI	ACTGG	5 cut(s)	126, 738, 858, 907, 936
BseRI	GAGGAG	1 cut(s)	251
BseXI	GCAGC	6 cut(s)	47, 63, 541, 694, 728, 877
BseYI	CCCAGC	1 cut(s)	282
BsgI	GTGCAG	2 cut(s)	70, 834
Bsh1236I	CGCG	1 cut(s)	24
BshFI	GGCC	5 cut(s)	106, 281, 501, 782, 879
BsiHKCI	CYCGRG	1 cut(s)	635
BsiSI	CCGG	2 cut(s)	430, 704
BsiWI	CGTACG	1 cut(s)	119
BslFI	GGGAC	1 cut(s)	686
BslI	CCNNNNNNNGG	4 cut(s)	347, 398, 416, 709
BsmAI	GTCTC	3 cut(s)	40, 197, 683
BsmBI	CGTCTC	2 cut(s)	40, 197
BsmFI	GGGAC	1 cut(s)	686
BsnI	GGCC	5 cut(s)	106, 281, 501, 782, 879
BsoBI	CYCGRG	1 cut(s)	635
Bsp1286I	GDGCHC	1 cut(s)	841
Bsp13I	TCCGGA	1 cut(s)	429
Bsp143I	GATC	5 cut(s)	64, 386, 432, 505, 643
Bsp1720I	GCTNAGC	1 cut(s)	294
BspACI	CCGC	5 cut(s)	12, 22, 24, 142, 696
BspANI	GGCC	5 cut(s)	106, 281, 501, 782, 879
BspCNI	CTCAG	2 cut(s)	58, 307
BspEI	TCCGGA	1 cut(s)	429
BspFNI	CGCG	1 cut(s)	24
BspHI	TCATGA	1 cut(s)	250
BspLI	GGNNCC	3 cut(s)	434, 507, 838
BspPI	GGATC	5 cut(s)	394, 427, 440, 500, 513
BsrDI	GCAATG	1 cut(s)	677
BsrI	ACTGG	5 cut(s)	126, 738, 858, 907, 936
BssECI	CCNNGG	2 cut(s)	22, 636
BssMI	GATC	5 cut(s)	64, 386, 432, 505, 643
BssNI	GRCGYC	1 cut(s)	115
Bst2UI	CCWGG	3 cut(s)	399, 503, 834
BstACI	GRCGYC	1 cut(s)	115
BstAPI	GCANNNNNTGC	2 cut(s)	57, 722
BstC8I	GCNNGC	2 cut(s)	780, 945
BstDEI	CTNAG	3 cut(s)	45, 294, 336
BstDSI	CCRYGG	1 cut(s)	22
BstENI	CCTNNNNNAGG	1 cut(s)	396
BstF5I	GGATG	3 cut(s)	364, 610, 646
BstFNI	CGCG	1 cut(s)	24
BstKTI	GATC	5 cut(s)	67, 389, 435, 508, 646
BstMAI	GTCTC	3 cut(s)	40, 197, 683
BstMBI	GATC	5 cut(s)	64, 386, 432, 505, 643
BstMWI	GCNNNNNNNGC	5 cut(s)	57, 60, 112, 722, 919
BstNI	CCWGG	3 cut(s)	399, 503, 834
BstPAI	GACNNNNGTC	1 cut(s)	128
BstSCI	CCNGG	4 cut(s)	397, 501, 702, 832
BstUI	CGCG	1 cut(s)	24
BstV1I	GCAGC	6 cut(s)	47, 63, 541, 694, 728, 877
BstX2I	RGATCY	2 cut(s)	432, 505
BstYI	RGATCY	2 cut(s)	432, 505
BsuRI	GGCC	5 cut(s)	106, 281, 501, 782, 879
BtgI	CCRYGG	1 cut(s)	22
BtsCI	GGATG	3 cut(s)	364, 610, 646
BtsIMutI	CAGTG	4 cut(s)	53, 133, 851, 900
Cac8I	GCNNGC	2 cut(s)	780, 945
CaiI	CAGNNNCTG	1 cut(s)	57
CciI	TCATGA	1 cut(s)	250
Cfr13I	GGNCC	1 cut(s)	280
Cfr42I	CCGCGG	1 cut(s)	25
CseI	GACGC	1 cut(s)	104
Csp6I	GTAC	3 cut(s)	120, 610, 956
CviAII	CATG	3 cut(s)	251, 257, 869
CviQI	GTAC	3 cut(s)	120, 610, 956
DdeI	CTNAG	3 cut(s)	45, 294, 336
DpnI	GATC	5 cut(s)	66, 388, 434, 507, 645
DpnII	GATC	5 cut(s)	64, 386, 432, 505, 643
EaeI	YGGCCR	2 cut(s)	104, 877
Eco24I	GRGCYC	1 cut(s)	841
Eco88I	CYCGRG	1 cut(s)	635
EcoNI	CCTNNNNNAGG	1 cut(s)	396
EcoRII	CCWGG	3 cut(s)	397, 501, 832
EcoT38I	GRGCYC	1 cut(s)	841
Esp3I	CGTCTC	2 cut(s)	40, 197
FaeI	CATG	3 cut(s)	254, 260, 872
FaiI	YATR	6 cut(s)	252, 258, 513, 567, 788, 870
FalI	AAGNNNNNCTT	2 cut(s)	432, 464
FaqI	GGGAC	1 cut(s)	686
FatI	CATG	3 cut(s)	250, 256, 868
FauI	CCCGC	1 cut(s)	17
FbaI	TGATCA	1 cut(s)	643
Fnu4HI	GCNGC	6 cut(s)	52, 61, 555, 683, 717, 891
FokI	GGATG	3 cut(s)	371, 617, 653
FriOI	GRGCYC	1 cut(s)	841
Fsp4HI	GCNGC	6 cut(s)	52, 61, 555, 683, 717, 891
FspBI	CTAG	3 cut(s)	150, 381, 626
GluI	GCNGC	6 cut(s)	52, 61, 555, 683, 717, 891
GsaI	CCCAGC	1 cut(s)	286
GsuI	CTGGAG	2 cut(s)	540, 855
HaeIII	GGCC	5 cut(s)	106, 281, 501, 782, 879
HapII	CCGG	2 cut(s)	430, 704
HgaI	GACGC	1 cut(s)	104
Hin1I	GRCGYC	1 cut(s)	115
Hin1II	CATG	3 cut(s)	254, 260, 872
HincII	GTYRAC	1 cut(s)	133
HindII	GTYRAC	1 cut(s)	133
HindIII	AAGCTT	1 cut(s)	614
HinfI	GANTC	5 cut(s)	215, 269, 422, 463, 906
HpaII	CCGG	2 cut(s)	430, 704
HphI	GGTGA	3 cut(s)	167, 381, 431
Hpy166II	GTNNAC	2 cut(s)	133, 747
Hpy188I	TCNGA	4 cut(s)	220, 274, 762, 917
Hpy188III	TCNNGA	8 cut(s)	150, 251, 344, 356, 430, 460, 635, 770
Hpy8I	GTNNAC	2 cut(s)	133, 747
Hpy99I	CGWCG	1 cut(s)	120
HpyAV	CCTTC	5 cut(s)	205, 239, 583, 632, 666
HpyCH4V	TGCA	9 cut(s)	51, 308, 557, 682, 716, 778, 851, 868, 893
HpyF10VI	GCNNNNNNNGC	5 cut(s)	57, 60, 112, 722, 919
HpyF3I	CTNAG	3 cut(s)	45, 294, 336
Hsp92I	GRCGYC	1 cut(s)	115
Hsp92II	CATG	3 cut(s)	254, 260, 872
Kpn2I	TCCGGA	1 cut(s)	429
Ksp22I	TGATCA	1 cut(s)	643
KspI	CCGCGG	1 cut(s)	25
Kzo9I	GATC	5 cut(s)	64, 386, 432, 505, 643
LmnI	GCTCC	2 cut(s)	59, 836
Lsp1109I	GCAGC	6 cut(s)	47, 63, 541, 694, 728, 877
LweI	GCATC	2 cut(s)	280, 349
MaeI	CTAG	3 cut(s)	150, 381, 626
MaeIII	GTNAC	3 cut(s)	493, 736, 844
MalI	GATC	5 cut(s)	66, 388, 434, 507, 645
MboI	GATC	5 cut(s)	64, 386, 432, 505, 643
MboII	GAAGA	2 cut(s)	59, 84
MflI	RGATCY	2 cut(s)	432, 505
MhlI	GDGCHC	1 cut(s)	841
MlsI	TGGCCA	2 cut(s)	106, 879
MluCI	AATT	7 cut(s)	16, 28, 158, 453, 773, 959, 968
MluNI	TGGCCA	2 cut(s)	106, 879
Mox20I	TGGCCA	2 cut(s)	106, 879
MroI	TCCGGA	1 cut(s)	429
MscI	TGGCCA	2 cut(s)	106, 879
MseI	TTAA	1 cut(s)	818
MslI	CAYNNNNRTG	2 cut(s)	255, 261
Msp20I	TGGCCA	2 cut(s)	106, 879
MspA1I	CMGCKG	2 cut(s)	24, 719
MspI	CCGG	2 cut(s)	430, 704
MspR9I	CCNGG	4 cut(s)	399, 503, 704, 834
MvaI	CCWGG	3 cut(s)	399, 503, 834
MvnI	CGCG	1 cut(s)	24
MwoI	GCNNNNNNNGC	5 cut(s)	57, 60, 112, 722, 919
NciI	CCSGG	1 cut(s)	704
NdeII	GATC	5 cut(s)	64, 386, 432, 505, 643
NlaIII	CATG	3 cut(s)	254, 260, 872
NlaIV	GGNNCC	3 cut(s)	434, 507, 838
NmuCI	GTSAC	1 cut(s)	736
PagI	TCATGA	1 cut(s)	250
PfeI	GAWTC	5 cut(s)	215, 269, 422, 463, 906
Pfl23II	CGTACG	1 cut(s)	119
PfoI	TCCNGGA	1 cut(s)	702
PkrI	GCNGC	6 cut(s)	53, 62, 556, 684, 718, 892
PshAI	GACNNNNGTC	1 cut(s)	128
Psp6I	CCWGG	3 cut(s)	397, 501, 832
PspFI	CCCAGC	1 cut(s)	282
PspGI	CCWGG	3 cut(s)	397, 501, 832
PspLI	CGTACG	1 cut(s)	119
PspN4I	GGNNCC	3 cut(s)	434, 507, 838
PspPI	GGNCC	1 cut(s)	280
PstNI	CAGNNNCTG	1 cut(s)	57
PsuI	RGATCY	2 cut(s)	432, 505
PvuII	CAGCTG	1 cut(s)	719
RsaI	GTAC	3 cut(s)	121, 611, 957
RsaNI	GTAC	3 cut(s)	120, 610, 956
RseI	CAYNNNNRTG	2 cut(s)	255, 261
SacII	CCGCGG	1 cut(s)	25
SaqAI	TTAA	1 cut(s)	818
SatI	GCNGC	6 cut(s)	52, 61, 555, 683, 717, 891
Sau3AI	GATC	5 cut(s)	64, 386, 432, 505, 643
Sau96I	GGNCC	1 cut(s)	280
ScrFI	CCNGG	4 cut(s)	399, 503, 704, 834
SduI	GDGCHC	1 cut(s)	841
SfaNI	GCATC	2 cut(s)	280, 349
Sfr303I	CCGCGG	1 cut(s)	25
SgrBI	CCGCGG	1 cut(s)	25
SmiMI	CAYNNNNRTG	2 cut(s)	255, 261
SmlI	CTYRAG	2 cut(s)	342, 458
SmoI	CTYRAG	2 cut(s)	342, 458
Sse9I	AATT	7 cut(s)	16, 28, 158, 453, 773, 959, 968
SsiI	CCGC	5 cut(s)	12, 22, 24, 142, 696
SspMI	CTAG	3 cut(s)	150, 381, 626
StyD4I	CCNGG	4 cut(s)	397, 501, 702, 832
TaqI	TCGA	1 cut(s)	288
TasI	AATT	7 cut(s)	16, 28, 158, 453, 773, 959, 968
TatI	WGTACW	1 cut(s)	609
TfiI	GAWTC	5 cut(s)	215, 269, 422, 463, 906
Tru1I	TTAA	1 cut(s)	818
Tru9I	TTAA	1 cut(s)	818
TscAI	CASTG	4 cut(s)	53, 133, 858, 907
TseFI	GTSAC	1 cut(s)	736
TseI	GCWGC	6 cut(s)	51, 60, 554, 682, 716, 890
Tsp45I	GTSAC	1 cut(s)	736
TspDTI	ATGAA	5 cut(s)	17, 267, 273, 582, 602
TspGWI	ACGGA	1 cut(s)	221
TspRI	CASTG	4 cut(s)	53, 133, 858, 907
XagI	CCTNNNNNAGG	1 cut(s)	396
XapI	RAATTY	3 cut(s)	16, 28, 453
XbaI	TCTAGA	1 cut(s)	149
XspI	CTAG	3 cut(s)	150, 381, 626

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.