Rw1G031770

zinc metalloprotease EGY2, chloroplastic

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
Physical Location & Seq
Forward (+)
59961763 .. 59965717
3955 bp
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UTR
Exon/CDS
Intron
Rw1G031770.1

Sequence Viewer

Length: 1587 bp
ATGAACTTATCCGCAAATTTTCGCGGGAATTTCGTCCCCATTTCCCAGTGTAGCTCCTGCTGCGATCTTCGGTTTCAACCATATTTTGCTTCTTCTTCATCCTCTGGTTCTTGGCCAAAACGGTGTCGTACAAGCAGTGTAAAGCTCCACCACATTCCCAGAGTTTTGAGGAAGCGAGAAGTGGGTTGTAGAGTTAATGAGACGGAGAAGGAATCAGATAACAATAATGATGAGGAGAAAGAAGGTCATGAACATGAAGGTGGAGATTCTAGTGAGGCCCAACTAGATTCTCAGCCTATTGTTGCTAACCAAATAAACAATGAGGCTGAAAATAAGCCTCAAGATGGTGTCCAGGATCTTGATAACGTAGAAGTTGCTAGTGGATCACCTCTGCCAGGTGTGAAGCCACAGCAAGGTGAATCAATGCGGATTCCAAAAGAAACTCTTGAAATTCTCAAGAACCAAGTTTTTGGCTTTGATACTTTTTTCGTAACAAGCCAGGATCCATATGAGGCTGGAGTATTATTTAAAGGAAATCTGCGAGGGAAGGCTGCTAAAAGCTACGAAAAGATATCAAAGAGAATGAAGGATAAGTTTGGGGACGAGTACAAGCTTTTCCTTCTAGTCAATCCTGAGGATGATCAACCTGTGGCGGTAGTAGTTCCACGGATGACATTGCAGCCAGAGACAACTGCTGTCCCAGAGTGGGTCGCAGCTGGTGCTTTTGGACTGGTCACATTGTCTACCTTACTTCTTCGGAATGTTCCTGAATTGCAGGCCAATTTATTTTCGGCCTTTGATAATGTTGAGCTGTTAAACAAAGGCTTACCTGGAGCCCTTGTAACTGCACTTGTTTTGGGGGTGCATGAGCTTGGCCACATTTTAGCTGCAAACAGCACGGGAATCAAGCTTGGAGTGCCATACTTTGTCCCCAGTTGGCAGATAGGCTCTTTTGGTACAATTACAAGAATTGTAAATATTGTACCCAAGCGTGAAGATCTTCTGAAAGTTGCAGCAGCTGGACCTTTAGCTGGATTTTCCTTGGGCATTGTTCTTTTGCTTTTAGGGTTCATCTTACCGCCCAGTGATGGTGTTGGTGTCATTGTTGATGCTTCTGTGTTTCATGAGTCCTTTCTTGCAGGGGGTATTGCAAAGCTTCTTCTTGGTGATGCACTCAAGGAAGGCACACCAATATCTGTTAATCCTCTCTTGATATGGGCATGGGCTGGACTTCTTATCAATGCCATCAACAGCATTCCTGCTGGAGAACTCGATGGGGGAAGAATTTCTTTTGCCATTTGGGGAAGAAAGGCTTCAGCTCGCTTCACTGGTTTCTCAATCGTGCTGCTTGGATTATCTTCACTAATCAATGATGTGGCATTCTATTGGGTAGCTCTGATATTCTTCTTACAGAGGGGGCCAATTGCTCCACTTGCTGAGGAGATCACAGATCCTGATGACAAGTATGTTGCCGTAGGCGTGTTAGTTTTGTTCTTGGGGTTGCTGGTATGCTTACCATACCCGTTTCCCTTCACAGATGACATGACCAGTTTGTCAAGTTTCTCAGGGTTAACAGATATGCTCTGA

Protein Analysis

528

Amino Acids

57.15

Weight (kDa)

5.1

Isoelectric Point (pI)

34.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_M50 PF02163 279 - 442 5.1e-13 Peptidase family M50
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1552
AccI GTMKAC 1 cut(s) 743
AccII CGCG 1 cut(s) 24
AciI CCGC 5 cut(s) 12, 24, 427, 653, 1079
AclWI GGATC 5 cut(s) 363, 391, 497, 510, 1445
AcoI YGGCCR 2 cut(s) 113, 874
AcsI RAATTY 4 cut(s) 16, 28, 450, 1284
AcuI CTGAAG 1 cut(s) 1299
AfaI GTAC 4 cut(s) 130, 608, 958, 984
AfiI CCNNNNNNNGG 6 cut(s) 344, 395, 413, 706, 1031, 1088
AgsI TTSAA 2 cut(s) 77, 449
AjnI CCWGG 4 cut(s) 351, 394, 498, 829
Alw26I GTCTC 2 cut(s) 194, 680
AlwI GGATC 5 cut(s) 363, 391, 497, 510, 1445
AlwNI CAGNNNCTG 2 cut(s) 1019, 1454
AoxI GGCC 6 cut(s) 113, 276, 777, 792, 874, 1418
ApeKI GCWGC 8 cut(s) 60, 551, 679, 713, 887, 1013, 1016, 1345
ApoI RAATTY 4 cut(s) 16, 28, 450, 1284
Asp700I GAANNNNTTC 3 cut(s) 999, 1285, 1312
AspS9I GGNCC 3 cut(s) 277, 1022, 1418
AsuHPI GGTGA 3 cut(s) 378, 428, 1178
AvaII GGWCC 1 cut(s) 1022
AxyI CCTNAGG 1 cut(s) 633
BalI TGGCCA 2 cut(s) 115, 876
BamHI GGATCC 1 cut(s) 502
BanII GRGCYC 1 cut(s) 838
BbvCI CCTCAGC 1 cut(s) 1437
BbvI GCAGC 8 cut(s) 47, 538, 691, 725, 874, 1025, 1028, 1332
BccI CCATC 4 cut(s) 338, 1082, 1253, 1268
BceAI ACGGC 1 cut(s) 1457
BciT130I CCWGG 4 cut(s) 353, 396, 500, 831
BclI TGATCA 1 cut(s) 640
BcoDI GTCTC 2 cut(s) 194, 680
BfaI CTAG 4 cut(s) 270, 284, 378, 623
BglII AGATCT 1 cut(s) 997
BisI GCNGC 8 cut(s) 61, 552, 680, 714, 888, 1014, 1017, 1346
BlsI GCNGC 8 cut(s) 62, 553, 681, 715, 889, 1015, 1018, 1347
Bme1390I CCNGG 4 cut(s) 353, 396, 500, 831
Bme18I GGWCC 1 cut(s) 1022
BmgT120I GGNCC 3 cut(s) 277, 1022, 1418
BmiI GGNNCC 3 cut(s) 504, 835, 1419
BmrFI CCNGG 4 cut(s) 353, 396, 500, 831
BmrI ACTGGG 3 cut(s) 40, 927, 1077
BmsI GCATC 2 cut(s) 1099, 1159
BmuI ACTGGG 3 cut(s) 40, 927, 1077
BpmI CTGGAG 3 cut(s) 537, 852, 1284
Bpu10I CCTNAGC 1 cut(s) 1437
BpuEI CTTGAG 3 cut(s) 324, 440, 1160
BsaJI CCNNGG 2 cut(s) 665, 1041
BsaXI ACNNNNNCTCC 2 cut(s) 825, 855
Bsc4I CCNNNNNNNGG 6 cut(s) 344, 395, 413, 706, 1031, 1088
Bse1I ACTGG 6 cut(s) 46, 735, 933, 1083, 1333, 1548
Bse21I CCTNAGG 1 cut(s) 633
Bse3DI GCAATG 1 cut(s) 674
BseBI CCWGG 4 cut(s) 353, 396, 500, 831
BseDI CCNNGG 2 cut(s) 665, 1041
BseGI GGATG 3 cut(s) 98, 643, 675
BseLI CCNNNNNNNGG 6 cut(s) 344, 395, 413, 706, 1031, 1088
BseMI GCAATG 1 cut(s) 674
BseMII CTCAG 4 cut(s) 305, 624, 1428, 1578
BseNI ACTGG 6 cut(s) 46, 735, 933, 1083, 1333, 1548
BseRI GAGGAG 2 cut(s) 248, 1454
BseXI GCAGC 8 cut(s) 47, 538, 691, 725, 874, 1025, 1028, 1332
BsgI GTGCAG 1 cut(s) 831
Bsh1236I CGCG 1 cut(s) 24
BshFI GGCC 6 cut(s) 115, 278, 779, 794, 876, 1420
BslFI GGGAC 4 cut(s) 20, 614, 683, 914
BslI CCNNNNNNNGG 6 cut(s) 344, 395, 413, 706, 1031, 1088
BsmAI GTCTC 2 cut(s) 194, 680
BsmBI CGTCTC 1 cut(s) 194
BsmFI GGGAC 4 cut(s) 20, 614, 683, 914
BsmI GAATGC 2 cut(s) 1254, 1379
BsnI GGCC 6 cut(s) 115, 278, 779, 794, 876, 1420
Bsp1286I GDGCHC 1 cut(s) 838
Bsp143I GATC 8 cut(s) 64, 355, 383, 502, 640, 997, 1443, 1450
BspACI CCGC 5 cut(s) 12, 24, 427, 653, 1079
BspANI GGCC 6 cut(s) 115, 278, 779, 794, 876, 1420
BspCNI CTCAG 4 cut(s) 304, 625, 1429, 1577
BspFNI CGCG 1 cut(s) 24
BspHI TCATGA 2 cut(s) 247, 1123
BspLI GGNNCC 3 cut(s) 504, 835, 1419
BspPI GGATC 5 cut(s) 363, 391, 497, 510, 1445
BsrDI GCAATG 1 cut(s) 674
BsrI ACTGG 6 cut(s) 46, 735, 933, 1083, 1333, 1548
BssECI CCNNGG 2 cut(s) 665, 1041
BssMI GATC 8 cut(s) 64, 355, 383, 502, 640, 997, 1443, 1450
BssT1I CCWWGG 1 cut(s) 1041
Bst2UI CCWGG 4 cut(s) 353, 396, 500, 831
Bst4CI ACNGT 1 cut(s) 123
BstAPI GCANNNNNTGC 1 cut(s) 719
BstC8I GCNNGC 2 cut(s) 777, 1321
BstDEI CTNAG 4 cut(s) 291, 633, 1437, 1564
BstDSI CCRYGG 1 cut(s) 665
BstENI CCTNNNNNAGG 1 cut(s) 393
BstF5I GGATG 3 cut(s) 98, 643, 675
BstFNI CGCG 1 cut(s) 24
BstKTI GATC 8 cut(s) 67, 358, 386, 505, 643, 1000, 1446, 1453
BstMAI GTCTC 2 cut(s) 194, 680
BstMBI GATC 8 cut(s) 64, 355, 383, 502, 640, 997, 1443, 1450
BstMWI GCNNNNNNNGC 4 cut(s) 60, 719, 916, 1433
BstNI CCWGG 4 cut(s) 353, 396, 500, 831
BstSCI CCNGG 4 cut(s) 351, 394, 498, 829
BstUI CGCG 1 cut(s) 24
BstV1I GCAGC 8 cut(s) 47, 538, 691, 725, 874, 1025, 1028, 1332
BstX2I RGATCY 4 cut(s) 355, 502, 997, 1450
BstXI CCANNNNNNTGG 1 cut(s) 470
BstYI RGATCY 4 cut(s) 355, 502, 997, 1450
Bsu36I CCTNAGG 1 cut(s) 633
BsuRI GGCC 6 cut(s) 115, 278, 779, 794, 876, 1420
BtgI CCRYGG 1 cut(s) 665
BtsCI GGATG 3 cut(s) 98, 643, 675
BtsI GCAGTG 1 cut(s) 142
BtsIMutI CAGTG 4 cut(s) 53, 142, 1090, 1326
Cac8I GCNNGC 2 cut(s) 777, 1321
CaiI CAGNNNCTG 2 cut(s) 1019, 1454
CciI TCATGA 2 cut(s) 247, 1123
Cfr13I GGNCC 3 cut(s) 277, 1022, 1418
Csp6I GTAC 4 cut(s) 129, 607, 957, 983
CviAII CATG 6 cut(s) 248, 254, 866, 1124, 1221, 1543
CviQI GTAC 4 cut(s) 129, 607, 957, 983
DdeI CTNAG 4 cut(s) 291, 633, 1437, 1564
DpnI GATC 8 cut(s) 66, 357, 385, 504, 642, 999, 1445, 1452
DpnII GATC 8 cut(s) 64, 355, 383, 502, 640, 997, 1443, 1450
DraI TTTAAA 1 cut(s) 529
DrdI GACNNNNNNGTC 1 cut(s) 1552
DseDI GACNNNNNNGTC 1 cut(s) 1552
EaeI YGGCCR 2 cut(s) 113, 874
Eco130I CCWWGG 1 cut(s) 1041
Eco24I GRGCYC 1 cut(s) 838
Eco32I GATATC 1 cut(s) 573
Eco47I GGWCC 1 cut(s) 1022
Eco57I CTGAAG 1 cut(s) 1299
Eco81I CCTNAGG 1 cut(s) 633
EcoNI CCTNNNNNAGG 1 cut(s) 393
EcoRII CCWGG 4 cut(s) 351, 394, 498, 829
EcoRV GATATC 1 cut(s) 573
EcoT14I CCWWGG 1 cut(s) 1041
EcoT38I GRGCYC 1 cut(s) 838
ErhI CCWWGG 1 cut(s) 1041
Esp3I CGTCTC 1 cut(s) 194
FaeI CATG 6 cut(s) 251, 257, 869, 1127, 1224, 1546
FalI AAGNNNNNCTT 6 cut(s) 429, 461, 1273, 1305, 1297, 1329
FaqI GGGAC 4 cut(s) 20, 614, 683, 914
FatI CATG 6 cut(s) 247, 253, 865, 1123, 1220, 1542
FauI CCCGC 1 cut(s) 17
FauNDI CATATG 1 cut(s) 508
FbaI TGATCA 1 cut(s) 640
FblI GTMKAC 1 cut(s) 743
Fnu4HI GCNGC 8 cut(s) 61, 552, 680, 714, 888, 1014, 1017, 1346
FokI GGATG 3 cut(s) 85, 650, 682
FriOI GRGCYC 1 cut(s) 838
Fsp4HI GCNGC 8 cut(s) 61, 552, 680, 714, 888, 1014, 1017, 1346
FspBI CTAG 4 cut(s) 270, 284, 378, 623
GluI GCNGC 8 cut(s) 61, 552, 680, 714, 888, 1014, 1017, 1346
GsuI CTGGAG 3 cut(s) 537, 852, 1284
HaeIII GGCC 6 cut(s) 115, 278, 779, 794, 876, 1420
Hin1II CATG 6 cut(s) 251, 257, 869, 1127, 1224, 1546
HincII GTYRAC 1 cut(s) 1572
HindII GTYRAC 1 cut(s) 1572
HindIII AAGCTT 3 cut(s) 611, 908, 1154
HinfI GANTC 7 cut(s) 212, 266, 287, 419, 430, 903, 1127
HpaI GTTAAC 1 cut(s) 1572
HphI GGTGA 3 cut(s) 378, 428, 1178
Hpy166II GTNNAC 2 cut(s) 744, 1572
Hpy188I TCNGA 5 cut(s) 217, 759, 1005, 1398, 1586
Hpy8I GTNNAC 2 cut(s) 744, 1572
HpyAV CCTTC 8 cut(s) 202, 236, 251, 541, 580, 629, 1175, 1540
HpyCH4III ACNGT 1 cut(s) 123
HpyCH4IV ACGT 1 cut(s) 366
HpyCH4V TGCA 9 cut(s) 679, 775, 848, 865, 890, 1013, 1139, 1151, 1172
HpyF10VI GCNNNNNNNGC 4 cut(s) 60, 719, 916, 1433
HpyF3I CTNAG 4 cut(s) 291, 633, 1437, 1564
HpySE526I ACGT 1 cut(s) 366
Hsp92II CATG 6 cut(s) 251, 257, 869, 1127, 1224, 1546
Ksp22I TGATCA 1 cut(s) 640
KspAI GTTAAC 1 cut(s) 1572
Kzo9I GATC 8 cut(s) 64, 355, 383, 502, 640, 997, 1443, 1450
LmnI GCTCC 4 cut(s) 59, 150, 833, 1432
Lsp1109I GCAGC 8 cut(s) 47, 538, 691, 725, 874, 1025, 1028, 1332
LweI GCATC 2 cut(s) 1099, 1159
MaeI CTAG 4 cut(s) 270, 284, 378, 623
MaeII ACGT 1 cut(s) 366
MaeIII GTNAC 3 cut(s) 490, 733, 841
MalI GATC 8 cut(s) 66, 357, 385, 504, 642, 999, 1445, 1452
MboI GATC 8 cut(s) 64, 355, 383, 502, 640, 997, 1443, 1450
MfeI CAATTG 1 cut(s) 1422
MflI RGATCY 4 cut(s) 355, 502, 997, 1450
MhlI GDGCHC 1 cut(s) 838
MlsI TGGCCA 2 cut(s) 115, 876
MluCI AATT 9 cut(s) 16, 28, 450, 770, 781, 960, 969, 1284, 1422
MluNI TGGCCA 2 cut(s) 115, 876
MlyI GAGTC 1 cut(s) 1136
Mox20I TGGCCA 2 cut(s) 115, 876
MroXI GAANNNNTTC 3 cut(s) 999, 1285, 1312
MscI TGGCCA 2 cut(s) 115, 876
MseI TTAA 5 cut(s) 195, 528, 815, 1200, 1571
MslI CAYNNNNRTG 2 cut(s) 252, 258
Msp20I TGGCCA 2 cut(s) 115, 876
MspA1I CMGCKG 2 cut(s) 716, 1019
MspR9I CCNGG 4 cut(s) 353, 396, 500, 831
MunI CAATTG 1 cut(s) 1422
Mva1269I GAATGC 2 cut(s) 1254, 1379
MvaI CCWGG 4 cut(s) 353, 396, 500, 831
MvnI CGCG 1 cut(s) 24
MwoI GCNNNNNNNGC 4 cut(s) 60, 719, 916, 1433
NdeI CATATG 1 cut(s) 508
NdeII GATC 8 cut(s) 64, 355, 383, 502, 640, 997, 1443, 1450
NlaIII CATG 6 cut(s) 251, 257, 869, 1127, 1224, 1546
NlaIV GGNNCC 3 cut(s) 504, 835, 1419
NmuCI GTSAC 1 cut(s) 733
PagI TCATGA 2 cut(s) 247, 1123
PctI GAATGC 2 cut(s) 1254, 1379
PdmI GAANNNNTTC 3 cut(s) 999, 1285, 1312
PfeI GAWTC 6 cut(s) 212, 266, 287, 419, 430, 903
PfoI TCCNGGA 1 cut(s) 351
PkrI GCNGC 8 cut(s) 62, 553, 681, 715, 889, 1015, 1018, 1347
PleI GAGTC 1 cut(s) 1135
PpsI GAGTC 1 cut(s) 1135
Psp6I CCWGG 4 cut(s) 351, 394, 498, 829
PspGI CCWGG 4 cut(s) 351, 394, 498, 829
PspN4I GGNNCC 3 cut(s) 504, 835, 1419
PspPI GGNCC 3 cut(s) 277, 1022, 1418
PstNI CAGNNNCTG 2 cut(s) 1019, 1454
PsuI RGATCY 4 cut(s) 355, 502, 997, 1450
PvuII CAGCTG 2 cut(s) 716, 1019
RsaI GTAC 4 cut(s) 130, 608, 958, 984
RsaNI GTAC 4 cut(s) 129, 607, 957, 983
RseI CAYNNNNRTG 2 cut(s) 252, 258
SaqAI TTAA 5 cut(s) 195, 528, 815, 1200, 1571
SatI GCNGC 8 cut(s) 61, 552, 680, 714, 888, 1014, 1017, 1346
Sau3AI GATC 8 cut(s) 64, 355, 383, 502, 640, 997, 1443, 1450
Sau96I GGNCC 3 cut(s) 277, 1022, 1418
SchI GAGTC 1 cut(s) 1136
ScrFI CCNGG 4 cut(s) 353, 396, 500, 831
SduI GDGCHC 1 cut(s) 838
SfaNI GCATC 2 cut(s) 1099, 1159
SinI GGWCC 1 cut(s) 1022
SmiMI CAYNNNNRTG 2 cut(s) 252, 258
SmlI CTYRAG 3 cut(s) 339, 455, 1175
SmoI CTYRAG 3 cut(s) 339, 455, 1175
Sse9I AATT 9 cut(s) 16, 28, 450, 770, 781, 960, 969, 1284, 1422
SsiI CCGC 5 cut(s) 12, 24, 427, 653, 1079
SspI AATATT 1 cut(s) 979
SspMI CTAG 4 cut(s) 270, 284, 378, 623
StyD4I CCNGG 4 cut(s) 351, 394, 498, 829
StyI CCWWGG 1 cut(s) 1041
TaaI ACNGT 1 cut(s) 123
TaiI ACGT 1 cut(s) 369
TaqI TCGA 1 cut(s) 1272
TasI AATT 9 cut(s) 16, 28, 450, 770, 781, 960, 969, 1284, 1422
TatI WGTACW 1 cut(s) 606
TfiI GAWTC 6 cut(s) 212, 266, 287, 419, 430, 903
Tru1I TTAA 5 cut(s) 195, 528, 815, 1200, 1571
Tru9I TTAA 5 cut(s) 195, 528, 815, 1200, 1571
TscAI CASTG 4 cut(s) 53, 142, 1090, 1333
TseFI GTSAC 1 cut(s) 733
TseI GCWGC 8 cut(s) 60, 551, 679, 713, 887, 1013, 1016, 1345
Tsp45I GTSAC 1 cut(s) 733
TspDTI ATGAA 7 cut(s) 17, 87, 264, 270, 599, 1060, 1112
TspGWI ACGGA 2 cut(s) 218, 682
TspRI CASTG 4 cut(s) 53, 142, 1090, 1333
VpaK11BI GGWCC 1 cut(s) 1022
XagI CCTNNNNNAGG 1 cut(s) 393
XapI RAATTY 4 cut(s) 16, 28, 450, 1284
XmiI GTMKAC 1 cut(s) 743
XmnI GAANNNNTTC 3 cut(s) 999, 1285, 1312
XspI CTAG 4 cut(s) 270, 284, 378, 623
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.