Rh1CG337800

zinc metalloprotease EGY2, chloroplastic

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
Physical Location & Seq
Forward (+)
61196814 .. 61201197
4384 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG337800.1

Sequence Viewer

Length: 1599 bp
ATGAACTTATCCGCAAATTTTCGCGGGAATTTCGTCCCCATTTCCCAGTGTAGCTCCTGCTGCGATCTTCGGTTTCAACCATATTTAGCTTCTTCTTCATCCTCTGGCTCTTGGCCAAAACGGTGTCGTATAAGCAGCTTGAAGCTCCACCACATTTCCAGAGGTGAATTTAGAGTTTTGAGGAAGCGAGAAGTGGGTTGTAGAGTTAATGAGACGGAGAAGGAATCAGATAACAATAATGATGAGGAGAAAGAAGGTCATGAACATGAAGGTGGAGATTCTAGTGAGGCCCAACTAGATTCTCAGCCTATTGTTGCTAACCAAATAAACAATGAGGCTGAAAACAAGCCTCAAGATGGTGTCCAGGATGTTGATAACGTAGAAGTTGCTAGTGGATCACCTCTGCCAGGTGTGAAGCCACAGCAAGGTGAATCAATCCGGATTCCAAAAGAAACTCTTGAAATTCTCAAGAACCAAGTTTTTGGCTTTGATACTTTTTTCGTAACAAGCCAGGATCCATATGAGGCTGGAGTATTATTTAAAGGAAATCTGCGAGGGAAGGCTGCTAAAAGTTACGAAAAGATATCAAAGAGAATGAAGGATAAGTTTGGGGATGAGTACAAGCTTTTCCTTCTAGTCAATCCTGAGGATGATCAACCTGTGGTGGTAGTAGTTCCACGGATGACATTGCAGCCAGAGACAACTGCTGTCCCAGAGTGGGTCGCAGCTGGTGCTTTTGGACTGGTCACATTGTCTACCTTACTTCTTCGGAATGTTCCTGAATTGCAGGCCAATTTATTTTCGGCCTTTGATAATGTTGAGCTGTTAAACAAAGGCTTACCTGGAGCCCTTGTAACTGCACTTGTTTTGGGGGTGCATGAGCTTGGCCACATTTTAGCTGCAAACAGCACTGGAATCAAGCTTGGAGTGCCATACTTTGTCCCCAGTTGGCAGATAGGCTCTTTTGGTACAATTACAAGAATTGTAAATATTGTACCCAAGCGTGAAGATCTTCTGAAAGTTGCAGCAGCAGGACCTTTAGCTGGATTTTCCTTGGGCATTGTTCTTTTGCTTTTAGGGTTCATCTTACCGCCCAGTGATGGTGTTGGTGTCATTGTTGATGCTTCTGTGTTTCATGAGTCCTTTCTTGCAGGGGGTATTGCAAAGCTTCTTCTTGGTGATGCACTCAAGGAAGGCACACCAATATCTGTTAATCCTCTCTTGATATGGGCATGGGCTGGACTTCTTATCAATGCCATTAACAGCATTCCTGCCGGAGAACTCGATGGGGGAAGAATTTCTTTTGCCATTTGGGGAAGAAAGGCTTCAGCTCGCTTCACTGGTTTCTCAATCGTGCTGCTTGGATTATCTTCACTAATCAATGATGTGGCATTCTATTGGGTAGCTCTGATATTCTTCTTACAGAGGGGGCCAATTGCTCCGCTTGCTGAGGAGATCACAGATCCTGATGACAAGTATGTTGCCGTAGGCGTGTTAGTTTTGTTCTTGGGGTTGCTGGTATGCTTACCATACCCGTTTCCCTTCACAGATGACATGACCAGTTTGTCAAGTTTCTCAGGGTTAACAGATATGCTCTGA

Protein Analysis

532

Amino Acids

57.62

Weight (kDa)

5.12

Isoelectric Point (pI)

34.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_M50 PF02163 283 - 446 5e-13 Peptidase family M50
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1564
AccI GTMKAC 1 cut(s) 755
AccII CGCG 1 cut(s) 24
AccIII TCCGGA 1 cut(s) 438
AciI CCGC 4 cut(s) 12, 24, 1091, 1442
AclWI GGATC 4 cut(s) 403, 509, 522, 1457
AcoI YGGCCR 2 cut(s) 113, 886
AcsI RAATTY 5 cut(s) 16, 28, 167, 462, 1296
AcuI CTGAAG 1 cut(s) 1311
AfaI GTAC 3 cut(s) 620, 970, 996
AfiI CCNNNNNNNGG 6 cut(s) 356, 407, 425, 718, 1043, 1100
AgsI TTSAA 3 cut(s) 77, 142, 461
AjnI CCWGG 4 cut(s) 363, 406, 510, 841
Alw26I GTCTC 2 cut(s) 206, 692
AlwI GGATC 4 cut(s) 403, 509, 522, 1457
AlwNI CAGNNNCTG 1 cut(s) 1466
Aor13HI TCCGGA 1 cut(s) 438
AoxI GGCC 6 cut(s) 113, 288, 789, 804, 886, 1430
ApeKI GCWGC 9 cut(s) 60, 135, 563, 691, 725, 899, 1025, 1028, 1357
ApoI RAATTY 5 cut(s) 16, 28, 167, 462, 1296
Asp700I GAANNNNTTC 3 cut(s) 1011, 1297, 1324
AspS9I GGNCC 3 cut(s) 289, 1034, 1430
AsuHPI GGTGA 4 cut(s) 176, 390, 440, 1190
AvaII GGWCC 1 cut(s) 1034
AxyI CCTNAGG 1 cut(s) 645
BalI TGGCCA 2 cut(s) 115, 888
BamHI GGATCC 1 cut(s) 514
BanII GRGCYC 1 cut(s) 850
BbvCI CCTCAGC 1 cut(s) 1449
BbvI GCAGC 9 cut(s) 47, 147, 550, 703, 737, 886, 1037, 1040, 1344
BccI CCATC 3 cut(s) 350, 1094, 1280
BceAI ACGGC 1 cut(s) 1469
BciT130I CCWGG 4 cut(s) 365, 408, 512, 843
BclI TGATCA 1 cut(s) 652
BcoDI GTCTC 2 cut(s) 206, 692
BfaI CTAG 4 cut(s) 282, 296, 390, 635
BglII AGATCT 1 cut(s) 1009
BisI GCNGC 9 cut(s) 61, 136, 564, 692, 726, 900, 1026, 1029, 1358
BlsI GCNGC 9 cut(s) 62, 137, 565, 693, 727, 901, 1027, 1030, 1359
Bme1390I CCNGG 4 cut(s) 365, 408, 512, 843
Bme18I GGWCC 1 cut(s) 1034
BmgT120I GGNCC 3 cut(s) 289, 1034, 1430
BmiI GGNNCC 3 cut(s) 516, 847, 1431
BmrFI CCNGG 4 cut(s) 365, 408, 512, 843
BmrI ACTGGG 3 cut(s) 40, 939, 1089
BmsI GCATC 2 cut(s) 1111, 1171
BmuI ACTGGG 3 cut(s) 40, 939, 1089
BpmI CTGGAG 2 cut(s) 549, 864
Bpu10I CCTNAGC 1 cut(s) 1449
BpuEI CTTGAG 3 cut(s) 336, 452, 1172
BsaJI CCNNGG 2 cut(s) 677, 1053
BsaWI WCCGGW 1 cut(s) 438
BsaXI ACNNNNNCTCC 2 cut(s) 837, 867
Bsc4I CCNNNNNNNGG 6 cut(s) 356, 407, 425, 718, 1043, 1100
Bse1I ACTGG 7 cut(s) 46, 747, 916, 945, 1095, 1345, 1560
Bse21I CCTNAGG 1 cut(s) 645
Bse3DI GCAATG 1 cut(s) 686
BseAI TCCGGA 1 cut(s) 438
BseBI CCWGG 4 cut(s) 365, 408, 512, 843
BseDI CCNNGG 2 cut(s) 677, 1053
BseGI GGATG 5 cut(s) 98, 373, 619, 655, 687
BseLI CCNNNNNNNGG 6 cut(s) 356, 407, 425, 718, 1043, 1100
BseMI GCAATG 1 cut(s) 686
BseMII CTCAG 4 cut(s) 317, 636, 1440, 1590
BseNI ACTGG 7 cut(s) 46, 747, 916, 945, 1095, 1345, 1560
BseRI GAGGAG 2 cut(s) 260, 1466
BseXI GCAGC 9 cut(s) 47, 147, 550, 703, 737, 886, 1037, 1040, 1344
BsgI GTGCAG 1 cut(s) 843
Bsh1236I CGCG 1 cut(s) 24
BshFI GGCC 6 cut(s) 115, 290, 791, 806, 888, 1432
BsiSI CCGG 2 cut(s) 439, 1275
BslFI GGGAC 3 cut(s) 20, 695, 926
BslI CCNNNNNNNGG 6 cut(s) 356, 407, 425, 718, 1043, 1100
BsmAI GTCTC 2 cut(s) 206, 692
BsmBI CGTCTC 1 cut(s) 206
BsmFI GGGAC 3 cut(s) 20, 695, 926
BsmI GAATGC 2 cut(s) 1266, 1391
BsnI GGCC 6 cut(s) 115, 290, 791, 806, 888, 1432
Bsp1286I GDGCHC 1 cut(s) 850
Bsp13I TCCGGA 1 cut(s) 438
Bsp143I GATC 7 cut(s) 64, 395, 514, 652, 1009, 1455, 1462
BspACI CCGC 4 cut(s) 12, 24, 1091, 1442
BspANI GGCC 6 cut(s) 115, 290, 791, 806, 888, 1432
BspCNI CTCAG 4 cut(s) 316, 637, 1441, 1589
BspEI TCCGGA 1 cut(s) 438
BspFNI CGCG 1 cut(s) 24
BspHI TCATGA 2 cut(s) 259, 1135
BspLI GGNNCC 3 cut(s) 516, 847, 1431
BspPI GGATC 4 cut(s) 403, 509, 522, 1457
BsrDI GCAATG 1 cut(s) 686
BsrI ACTGG 7 cut(s) 46, 747, 916, 945, 1095, 1345, 1560
BssECI CCNNGG 2 cut(s) 677, 1053
BssMI GATC 7 cut(s) 64, 395, 514, 652, 1009, 1455, 1462
BssT1I CCWWGG 1 cut(s) 1053
Bst2UI CCWGG 4 cut(s) 365, 408, 512, 843
Bst4CI ACNGT 1 cut(s) 123
BstAPI GCANNNNNTGC 1 cut(s) 731
BstC8I GCNNGC 3 cut(s) 789, 1333, 1446
BstDEI CTNAG 4 cut(s) 303, 645, 1449, 1576
BstDSI CCRYGG 1 cut(s) 677
BstENI CCTNNNNNAGG 1 cut(s) 405
BstF5I GGATG 5 cut(s) 98, 373, 619, 655, 687
BstFNI CGCG 1 cut(s) 24
BstKTI GATC 7 cut(s) 67, 398, 517, 655, 1012, 1458, 1465
BstMAI GTCTC 2 cut(s) 206, 692
BstMBI GATC 7 cut(s) 64, 395, 514, 652, 1009, 1455, 1462
BstMWI GCNNNNNNNGC 4 cut(s) 60, 731, 928, 1445
BstNI CCWGG 4 cut(s) 365, 408, 512, 843
BstSCI CCNGG 4 cut(s) 363, 406, 510, 841
BstUI CGCG 1 cut(s) 24
BstV1I GCAGC 9 cut(s) 47, 147, 550, 703, 737, 886, 1037, 1040, 1344
BstX2I RGATCY 3 cut(s) 514, 1009, 1462
BstXI CCANNNNNNTGG 1 cut(s) 482
BstYI RGATCY 3 cut(s) 514, 1009, 1462
Bsu36I CCTNAGG 1 cut(s) 645
BsuRI GGCC 6 cut(s) 115, 290, 791, 806, 888, 1432
BtgI CCRYGG 1 cut(s) 677
BtsCI GGATG 5 cut(s) 98, 373, 619, 655, 687
BtsIMutI CAGTG 4 cut(s) 53, 909, 1102, 1338
Cac8I GCNNGC 3 cut(s) 789, 1333, 1446
CaiI CAGNNNCTG 1 cut(s) 1466
CciI TCATGA 2 cut(s) 259, 1135
Cfr13I GGNCC 3 cut(s) 289, 1034, 1430
Csp6I GTAC 3 cut(s) 619, 969, 995
CviAII CATG 6 cut(s) 260, 266, 878, 1136, 1233, 1555
CviQI GTAC 3 cut(s) 619, 969, 995
DdeI CTNAG 4 cut(s) 303, 645, 1449, 1576
DpnI GATC 7 cut(s) 66, 397, 516, 654, 1011, 1457, 1464
DpnII GATC 7 cut(s) 64, 395, 514, 652, 1009, 1455, 1462
DraI TTTAAA 1 cut(s) 541
DrdI GACNNNNNNGTC 1 cut(s) 1564
DseDI GACNNNNNNGTC 1 cut(s) 1564
EaeI YGGCCR 2 cut(s) 113, 886
Eco130I CCWWGG 1 cut(s) 1053
Eco24I GRGCYC 1 cut(s) 850
Eco32I GATATC 1 cut(s) 585
Eco47I GGWCC 1 cut(s) 1034
Eco57I CTGAAG 1 cut(s) 1311
Eco81I CCTNAGG 1 cut(s) 645
EcoNI CCTNNNNNAGG 1 cut(s) 405
EcoO109I RGGNCCY 1 cut(s) 1034
EcoRII CCWGG 4 cut(s) 363, 406, 510, 841
EcoRV GATATC 1 cut(s) 585
EcoT14I CCWWGG 1 cut(s) 1053
EcoT38I GRGCYC 1 cut(s) 850
ErhI CCWWGG 1 cut(s) 1053
Esp3I CGTCTC 1 cut(s) 206
FaeI CATG 6 cut(s) 263, 269, 881, 1139, 1236, 1558
FalI AAGNNNNNCTT 6 cut(s) 441, 473, 1285, 1317, 1309, 1341
FaqI GGGAC 3 cut(s) 20, 695, 926
FatI CATG 6 cut(s) 259, 265, 877, 1135, 1232, 1554
FauI CCCGC 1 cut(s) 17
FauNDI CATATG 1 cut(s) 520
FbaI TGATCA 1 cut(s) 652
FblI GTMKAC 1 cut(s) 755
Fnu4HI GCNGC 9 cut(s) 61, 136, 564, 692, 726, 900, 1026, 1029, 1358
FokI GGATG 5 cut(s) 85, 380, 626, 662, 694
FriOI GRGCYC 1 cut(s) 850
Fsp4HI GCNGC 9 cut(s) 61, 136, 564, 692, 726, 900, 1026, 1029, 1358
FspBI CTAG 4 cut(s) 282, 296, 390, 635
GluI GCNGC 9 cut(s) 61, 136, 564, 692, 726, 900, 1026, 1029, 1358
GsuI CTGGAG 2 cut(s) 549, 864
HaeIII GGCC 6 cut(s) 115, 290, 791, 806, 888, 1432
HapII CCGG 2 cut(s) 439, 1275
Hin1II CATG 6 cut(s) 263, 269, 881, 1139, 1236, 1558
HincII GTYRAC 1 cut(s) 1584
HindII GTYRAC 1 cut(s) 1584
HindIII AAGCTT 3 cut(s) 623, 920, 1166
HinfI GANTC 7 cut(s) 224, 278, 299, 431, 442, 915, 1139
HpaI GTTAAC 1 cut(s) 1584
HpaII CCGG 2 cut(s) 439, 1275
HphI GGTGA 4 cut(s) 176, 390, 440, 1190
Hpy166II GTNNAC 2 cut(s) 756, 1584
Hpy188I TCNGA 5 cut(s) 229, 771, 1017, 1410, 1598
Hpy8I GTNNAC 2 cut(s) 756, 1584
HpyAV CCTTC 8 cut(s) 214, 248, 263, 553, 592, 641, 1187, 1552
HpyCH4III ACNGT 1 cut(s) 123
HpyCH4IV ACGT 1 cut(s) 378
HpyCH4V TGCA 9 cut(s) 691, 787, 860, 877, 902, 1025, 1151, 1163, 1184
HpyF10VI GCNNNNNNNGC 4 cut(s) 60, 731, 928, 1445
HpyF3I CTNAG 4 cut(s) 303, 645, 1449, 1576
HpySE526I ACGT 1 cut(s) 378
Hsp92II CATG 6 cut(s) 263, 269, 881, 1139, 1236, 1558
Kpn2I TCCGGA 1 cut(s) 438
Ksp22I TGATCA 1 cut(s) 652
KspAI GTTAAC 1 cut(s) 1584
Kzo9I GATC 7 cut(s) 64, 395, 514, 652, 1009, 1455, 1462
LmnI GCTCC 4 cut(s) 59, 150, 845, 1444
Lsp1109I GCAGC 9 cut(s) 47, 147, 550, 703, 737, 886, 1037, 1040, 1344
LweI GCATC 2 cut(s) 1111, 1171
MaeI CTAG 4 cut(s) 282, 296, 390, 635
MaeII ACGT 1 cut(s) 378
MaeIII GTNAC 4 cut(s) 502, 572, 745, 853
MalI GATC 7 cut(s) 66, 397, 516, 654, 1011, 1457, 1464
MboI GATC 7 cut(s) 64, 395, 514, 652, 1009, 1455, 1462
MfeI CAATTG 1 cut(s) 1434
MflI RGATCY 3 cut(s) 514, 1009, 1462
MhlI GDGCHC 1 cut(s) 850
MlsI TGGCCA 2 cut(s) 115, 888
MluNI TGGCCA 2 cut(s) 115, 888
MlyI GAGTC 1 cut(s) 1148
Mox20I TGGCCA 2 cut(s) 115, 888
MroI TCCGGA 1 cut(s) 438
MroXI GAANNNNTTC 3 cut(s) 1011, 1297, 1324
MscI TGGCCA 2 cut(s) 115, 888
MseI TTAA 6 cut(s) 207, 540, 827, 1212, 1260, 1583
MslI CAYNNNNRTG 2 cut(s) 264, 270
Msp20I TGGCCA 2 cut(s) 115, 888
MspA1I CMGCKG 1 cut(s) 728
MspI CCGG 2 cut(s) 439, 1275
MspR9I CCNGG 4 cut(s) 365, 408, 512, 843
MunI CAATTG 1 cut(s) 1434
Mva1269I GAATGC 2 cut(s) 1266, 1391
MvaI CCWGG 4 cut(s) 365, 408, 512, 843
MvnI CGCG 1 cut(s) 24
MwoI GCNNNNNNNGC 4 cut(s) 60, 731, 928, 1445
NdeI CATATG 1 cut(s) 520
NdeII GATC 7 cut(s) 64, 395, 514, 652, 1009, 1455, 1462
NlaIII CATG 6 cut(s) 263, 269, 881, 1139, 1236, 1558
NlaIV GGNNCC 3 cut(s) 516, 847, 1431
NmuCI GTSAC 1 cut(s) 745
PagI TCATGA 2 cut(s) 259, 1135
PctI GAATGC 2 cut(s) 1266, 1391
PdmI GAANNNNTTC 3 cut(s) 1011, 1297, 1324
PfeI GAWTC 6 cut(s) 224, 278, 299, 431, 442, 915
PfoI TCCNGGA 1 cut(s) 363
PkrI GCNGC 9 cut(s) 62, 137, 565, 693, 727, 901, 1027, 1030, 1359
PleI GAGTC 1 cut(s) 1147
PpsI GAGTC 1 cut(s) 1147
PpuMI RGGWCCY 1 cut(s) 1034
Psp5II RGGWCCY 1 cut(s) 1034
Psp6I CCWGG 4 cut(s) 363, 406, 510, 841
PspGI CCWGG 4 cut(s) 363, 406, 510, 841
PspN4I GGNNCC 3 cut(s) 516, 847, 1431
PspPI GGNCC 3 cut(s) 289, 1034, 1430
PspPPI RGGWCCY 1 cut(s) 1034
PstNI CAGNNNCTG 1 cut(s) 1466
PsuI RGATCY 3 cut(s) 514, 1009, 1462
PvuII CAGCTG 1 cut(s) 728
RsaI GTAC 3 cut(s) 620, 970, 996
RsaNI GTAC 3 cut(s) 619, 969, 995
RseI CAYNNNNRTG 2 cut(s) 264, 270
SaqAI TTAA 6 cut(s) 207, 540, 827, 1212, 1260, 1583
SatI GCNGC 9 cut(s) 61, 136, 564, 692, 726, 900, 1026, 1029, 1358
Sau3AI GATC 7 cut(s) 64, 395, 514, 652, 1009, 1455, 1462
Sau96I GGNCC 3 cut(s) 289, 1034, 1430
SchI GAGTC 1 cut(s) 1148
ScrFI CCNGG 4 cut(s) 365, 408, 512, 843
SduI GDGCHC 1 cut(s) 850
SfaNI GCATC 2 cut(s) 1111, 1171
SinI GGWCC 1 cut(s) 1034
SmiMI CAYNNNNRTG 2 cut(s) 264, 270
SmlI CTYRAG 3 cut(s) 351, 467, 1187
SmoI CTYRAG 3 cut(s) 351, 467, 1187
SsiI CCGC 4 cut(s) 12, 24, 1091, 1442
SspI AATATT 1 cut(s) 991
SspMI CTAG 4 cut(s) 282, 296, 390, 635
StyD4I CCNGG 4 cut(s) 363, 406, 510, 841
StyI CCWWGG 1 cut(s) 1053
TaaI ACNGT 1 cut(s) 123
TaiI ACGT 1 cut(s) 381
TaqI TCGA 1 cut(s) 1284
TatI WGTACW 1 cut(s) 618
TfiI GAWTC 6 cut(s) 224, 278, 299, 431, 442, 915
Tru1I TTAA 6 cut(s) 207, 540, 827, 1212, 1260, 1583
Tru9I TTAA 6 cut(s) 207, 540, 827, 1212, 1260, 1583
TscAI CASTG 4 cut(s) 53, 916, 1102, 1345
TseFI GTSAC 1 cut(s) 745
TseI GCWGC 9 cut(s) 60, 135, 563, 691, 725, 899, 1025, 1028, 1357
Tsp45I GTSAC 1 cut(s) 745
TspDTI ATGAA 7 cut(s) 17, 87, 276, 282, 611, 1072, 1124
TspGWI ACGGA 2 cut(s) 230, 694
TspRI CASTG 4 cut(s) 53, 916, 1102, 1345
VpaK11BI GGWCC 1 cut(s) 1034
XagI CCTNNNNNAGG 1 cut(s) 405
XapI RAATTY 5 cut(s) 16, 28, 167, 462, 1296
XmiI GTMKAC 1 cut(s) 755
XmnI GAANNNNTTC 3 cut(s) 1011, 1297, 1324
XspI CTAG 4 cut(s) 282, 296, 390, 635
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.