pycom01g16770

zinc metalloprotease EGY2, chloroplastic

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
Physical Location & Seq
Forward (+)
16271844 .. 16275996
4153 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g16770.8

Sequence Viewer

Length: 1554 bp
ATGAACTTCTCGGTAACTTTTCGAGGGAATTTTGTTCCCTTATCGCAGTGCAGCTCTTGCTGCGATCTTCGTTTTCAGCCTTATTTCGCTTCCGAAACTGGTTCATGGAGGAAACGGCACCGTCGCAGAAGCAGCTTGAAGCTCCAGGTTTCAAGAATTTTGAGGAAGCGAGAGGTTGTTTGTAGAGTGAGTGAGACGGAGACCGAACCGGATAGCAATAACGATGAGGAAAAAGGACATGGAAATGAAGGGGGAGATTGTGATGCTGCCGTCCATTACGATTCGCAGCCGGTAGTTGCAGACCAAGCAAACAATGATGCCGAAACTAAGGCTCAATTTGGGGTCCAGGAGGCTGAAAATGTAGAAGTTTCAAGTGGATCGCCTCTTCCAGGTGTGAAGCCGCAACTGGGTGAATCCATGCGGATTCCAAAGGAAACACTCGATATTCTGAAGAACCAAGTTTTCGGCTTTGATACCTTTTTCGTGACAGGCCAGGATCCATATGAGAGTGGAGTATTGTTTAAAGGAAACCTGCGAGGAGTGCCTGCTAAAAGTTACGAAAAGATATCAAGGAGACTGCAGGATAAGTTTGGGGATGAATATAAGCTTTTCCTCCTAGTCAATCCTGAGGATGATCAACCGGTGGCAGTTGTAGTTCCACAAAGGACATTACAGCCAGAGTCAACTGCCGTCCCAGAGTGGTTTGCAGCTGGTGCTTTTGGATTGGTCACATTGTTTACCCTACTTCTTCGAAATGTTCCTGAATTGCAGTCCAATTTACTGTCAGCTTTTGATAATCCTGAGCTGTTGAAGAATGGTTTACCTGGAGCCCTTGTGACTGCAGCTGTTTTGGGCGTGCATGAACTCGGCCATGTTTTAGTTGCAAATAGCACTGGAGTTGTGCTTGGAGTGCCATACTTTATCCCCAGTTGGCAGATAGGCTCTTTCGGTACAATTACAAGAATTGTGAATATTGTACCCAAGCGTGAAAATCTTCTGAAAGTTGCGGCGGCAGGACCCTTGGCTGGATTTTCCTTGGGATTTGTCCTGCTGCTTTTAGGATTCTTCTTACCACCTAGCGATGGCATTGGTGTTGTTGTCGACGCTTCTGTATTTCACGAGTCTTTTCTTGTTGGGGGTACTGCAAAGCTTCTTCTCGGTGACACGCTAAAGGAAGGCACTCCCATATCTCTTAACCCTCTCCTGTTATGGGCGTGGGCTGGACTCGTTATCAACGCTATTAACAGCATTCCGGCTGGAGAGCTTGACGGGGGCAGAATTTCGTTTGCCATTTGGGGAAGAAAGGCTGCAACTCGCATCACGGGTGCTTCAATCGCTCTGCTCGGATTATCATCCCTGGTCAGTGACGTTGCATTTTATTGGGTAGTTTTGATATTCATCTTACAGAGAGGGCCGATTGCTCCACTCTACGAGGAGATCGCAGATCCTGACAACAAGTACGTTGGCCTCGGCGTATTAGTTTTGTTCTTGGGATTGCTGGTATGCTTACCATACCCCTTTCCCTTCGTAGACGAAATCATGACAAGTTTCTAA

Protein Analysis

518

Amino Acids

56.17

Weight (kDa)

5.22

Isoelectric Point (pI)

41.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 540
AccB1I GGYRCC 1 cut(s) 117
AccI GTMKAC 2 cut(s) 1101, 1530
AciI CCGC 4 cut(s) 401, 421, 1007, 1010
AclWI GGATC 4 cut(s) 385, 491, 504, 1439
AcoI YGGCCR 1 cut(s) 868
AcsI RAATTY 3 cut(s) 28, 156, 1278
AcuI CTGAAG 1 cut(s) 470
AfaI GTAC 4 cut(s) 952, 978, 1141, 1460
AfiI CCNNNNNNNGG 5 cut(s) 389, 407, 1025, 1082, 1210
AgeI ACCGGT 1 cut(s) 640
AgsI TTSAA 5 cut(s) 139, 153, 372, 811, 1332
AjnI CCWGG 6 cut(s) 144, 345, 388, 492, 823, 1356
Alw26I GTCTC 3 cut(s) 188, 194, 568
AlwI GGATC 4 cut(s) 385, 491, 504, 1439
AlwNI CAGNNNCTG 1 cut(s) 1448
AoxI GGCC 4 cut(s) 490, 868, 1412, 1465
ApeKI GCWGC 9 cut(s) 51, 60, 132, 266, 286, 707, 842, 1051, 1307
ApoI RAATTY 3 cut(s) 28, 156, 1278
AsiGI ACCGGT 1 cut(s) 640
Asp700I GAANNNNTTC 1 cut(s) 993
AspS9I GGNCC 3 cut(s) 343, 1016, 1412
AsuHPI GGTGA 2 cut(s) 422, 1172
AsuII TTCGAA 1 cut(s) 751
AvaII GGWCC 2 cut(s) 343, 1016
AxyI CCTNAGG 1 cut(s) 627
BamHI GGATCC 1 cut(s) 496
BanI GGYRCC 1 cut(s) 117
BanII GRGCYC 1 cut(s) 832
BauI CACGAG 1 cut(s) 1118
BbvI GCAGC 9 cut(s) 47, 63, 144, 253, 298, 719, 854, 1038, 1294
BccI CCATC 1 cut(s) 1076
BceAI ACGGC 3 cut(s) 131, 254, 674
BciT130I CCWGG 6 cut(s) 146, 347, 390, 494, 825, 1358
BclI TGATCA 1 cut(s) 634
BcoDI GTCTC 3 cut(s) 188, 194, 568
BfaI CTAG 2 cut(s) 617, 1077
BfmI CTRYAG 2 cut(s) 578, 840
BfuAI ACCTGC 1 cut(s) 540
Bme1390I CCNGG 6 cut(s) 146, 347, 390, 494, 825, 1358
Bme18I GGWCC 2 cut(s) 343, 1016
BmgT120I GGNCC 3 cut(s) 343, 1016, 1412
BmiI GGNNCC 5 cut(s) 119, 344, 498, 829, 1018
BmrFI CCNGG 6 cut(s) 146, 347, 390, 494, 825, 1358
BmrI ACTGGG 2 cut(s) 416, 921
BmsI GCATC 3 cut(s) 253, 307, 1326
BmuI ACTGGG 2 cut(s) 416, 921
BpmI CTGGAG 4 cut(s) 128, 846, 915, 1278
Bpu10I CCTNAGC 1 cut(s) 801
Bpu14I TTCGAA 1 cut(s) 751
BsaBI GATNNNNATC 2 cut(s) 1351, 1397
BsaI GGTCTC 1 cut(s) 194
BsaJI CCNNGG 4 cut(s) 1020, 1035, 1356, 1468
BsaWI WCCGGW 2 cut(s) 208, 640
BsaXI ACNNNNNCTCC 2 cut(s) 819, 849
Bsc4I CCNNNNNNNGG 5 cut(s) 389, 407, 1025, 1082, 1210
Bse118I RCCGGY 2 cut(s) 289, 640
Bse1I ACTGG 4 cut(s) 103, 411, 898, 927
Bse21I CCTNAGG 1 cut(s) 627
Bse8I GATNNNNATC 2 cut(s) 1351, 1397
BseBI CCWGG 6 cut(s) 146, 347, 390, 494, 825, 1358
BseDI CCNNGG 4 cut(s) 1020, 1035, 1356, 1468
BseGI GGATG 3 cut(s) 601, 637, 1352
BseJI GATNNNNATC 2 cut(s) 1351, 1397
BseLI CCNNNNNNNGG 5 cut(s) 389, 407, 1025, 1082, 1210
BseMII CTCAG 2 cut(s) 618, 792
BseNI ACTGG 4 cut(s) 103, 411, 898, 927
BseRI GAGGAG 2 cut(s) 552, 1448
BseXI GCAGC 9 cut(s) 47, 63, 144, 253, 298, 719, 854, 1038, 1294
BsgI GTGCAG 1 cut(s) 70
BshFI GGCC 4 cut(s) 492, 870, 1414, 1467
BshNI GGYRCC 1 cut(s) 117
BshTI ACCGGT 1 cut(s) 640
BsiSI CCGG 4 cut(s) 209, 290, 641, 1253
BslFI GGGAC 1 cut(s) 677
BslI CCNNNNNNNGG 5 cut(s) 389, 407, 1025, 1082, 1210
BsmAI GTCTC 3 cut(s) 188, 194, 568
BsmBI CGTCTC 1 cut(s) 188
BsmFI GGGAC 1 cut(s) 677
BsmI GAATGC 1 cut(s) 1248
BsnI GGCC 4 cut(s) 492, 870, 1414, 1467
Bso31I GGTCTC 1 cut(s) 194
Bsp119I TTCGAA 1 cut(s) 751
Bsp1286I GDGCHC 1 cut(s) 832
Bsp143I GATC 6 cut(s) 64, 377, 496, 634, 1437, 1444
BspACI CCGC 4 cut(s) 401, 421, 1007, 1010
BspANI GGCC 4 cut(s) 492, 870, 1414, 1467
BspCNI CTCAG 2 cut(s) 619, 793
BspHI TCATGA 1 cut(s) 1539
BspLI GGNNCC 5 cut(s) 119, 344, 498, 829, 1018
BspMAI CTGCAG 2 cut(s) 582, 844
BspMI ACCTGC 1 cut(s) 540
BspPI GGATC 4 cut(s) 385, 491, 504, 1439
BspT104I TTCGAA 1 cut(s) 751
BspT107I GGYRCC 1 cut(s) 117
BspTNI GGTCTC 1 cut(s) 194
BsrFI RCCGGY 2 cut(s) 289, 640
BsrI ACTGG 4 cut(s) 103, 411, 898, 927
BssAI RCCGGY 2 cut(s) 289, 640
BssECI CCNNGG 4 cut(s) 1020, 1035, 1356, 1468
BssMI GATC 6 cut(s) 64, 377, 496, 634, 1437, 1444
BssSI CACGAG 1 cut(s) 1118
BssT1I CCWWGG 2 cut(s) 1020, 1035
Bst2BI CACGAG 1 cut(s) 1118
Bst2UI CCWGG 6 cut(s) 146, 347, 390, 494, 825, 1358
Bst4CI ACNGT 2 cut(s) 122, 783
Bst6I CTCTTC 1 cut(s) 390
BstAPI GCANNNNNTGC 2 cut(s) 57, 713
BstBI TTCGAA 1 cut(s) 751
BstC8I GCNNGC 2 cut(s) 546, 857
BstDEI CTNAG 3 cut(s) 327, 627, 801
BstENI CCTNNNNNAGG 1 cut(s) 387
BstF5I GGATG 3 cut(s) 601, 637, 1352
BstKTI GATC 6 cut(s) 67, 380, 499, 637, 1440, 1447
BstMAI GTCTC 3 cut(s) 188, 194, 568
BstMBI GATC 6 cut(s) 64, 377, 496, 634, 1437, 1444
BstMWI GCNNNNNNNGC 8 cut(s) 57, 60, 132, 305, 541, 713, 910, 1334
BstNI CCWGG 6 cut(s) 146, 347, 390, 494, 825, 1358
BstSCI CCNGG 6 cut(s) 144, 345, 388, 492, 823, 1356
BstSFI CTRYAG 2 cut(s) 578, 840
BstV1I GCAGC 9 cut(s) 47, 63, 144, 253, 298, 719, 854, 1038, 1294
BstX2I RGATCY 2 cut(s) 496, 1444
BstYI RGATCY 2 cut(s) 496, 1444
Bsu36I CCTNAGG 1 cut(s) 627
BsuRI GGCC 4 cut(s) 492, 870, 1414, 1467
BtgZI GCGATG 1 cut(s) 1095
BtsCI GGATG 3 cut(s) 601, 637, 1352
BtsI GCAGTG 1 cut(s) 53
BtsIMutI CAGTG 3 cut(s) 53, 891, 1369
BveI ACCTGC 1 cut(s) 540
Cac8I GCNNGC 2 cut(s) 546, 857
CaiI CAGNNNCTG 1 cut(s) 1448
CciI TCATGA 1 cut(s) 1539
Cfr10I RCCGGY 2 cut(s) 289, 640
Cfr13I GGNCC 3 cut(s) 343, 1016, 1412
CseI GACGC 1 cut(s) 1112
Csp6I GTAC 4 cut(s) 951, 977, 1140, 1459
CspAI ACCGGT 1 cut(s) 640
CviAII CATG 6 cut(s) 105, 239, 418, 860, 872, 1540
CviQI GTAC 4 cut(s) 951, 977, 1140, 1459
DdeI CTNAG 3 cut(s) 327, 627, 801
DpnI GATC 6 cut(s) 66, 379, 498, 636, 1439, 1446
DpnII GATC 6 cut(s) 64, 377, 496, 634, 1437, 1444
DraI TTTAAA 1 cut(s) 523
EaeI YGGCCR 1 cut(s) 868
Eam1104I CTCTTC 1 cut(s) 390
EarI CTCTTC 1 cut(s) 390
Eco130I CCWWGG 2 cut(s) 1020, 1035
Eco24I GRGCYC 1 cut(s) 832
Eco31I GGTCTC 1 cut(s) 194
Eco32I GATATC 1 cut(s) 567
Eco47I GGWCC 2 cut(s) 343, 1016
Eco57I CTGAAG 1 cut(s) 470
Eco81I CCTNAGG 1 cut(s) 627
EcoNI CCTNNNNNAGG 1 cut(s) 387
EcoO109I RGGNCCY 1 cut(s) 1016
EcoRII CCWGG 6 cut(s) 144, 345, 388, 492, 823, 1356
EcoRV GATATC 1 cut(s) 567
EcoT14I CCWWGG 2 cut(s) 1020, 1035
EcoT38I GRGCYC 1 cut(s) 832
ErhI CCWWGG 2 cut(s) 1020, 1035
Esp3I CGTCTC 1 cut(s) 188
FaeI CATG 6 cut(s) 108, 242, 421, 863, 875, 1543
FaqI GGGAC 1 cut(s) 677
FatI CATG 6 cut(s) 104, 238, 417, 859, 871, 1539
FauNDI CATATG 1 cut(s) 502
FbaI TGATCA 1 cut(s) 634
FblI GTMKAC 2 cut(s) 1101, 1530
FokI GGATG 3 cut(s) 608, 644, 1339
FriOI GRGCYC 1 cut(s) 832
FspBI CTAG 2 cut(s) 617, 1077
GsuI CTGGAG 4 cut(s) 128, 846, 915, 1278
HaeIII GGCC 4 cut(s) 492, 870, 1414, 1467
HapII CCGG 4 cut(s) 209, 290, 641, 1253
HgaI GACGC 1 cut(s) 1112
Hin1II CATG 6 cut(s) 108, 242, 421, 863, 875, 1543
HincII GTYRAC 2 cut(s) 684, 1102
HindII GTYRAC 2 cut(s) 684, 1102
HindIII AAGCTT 2 cut(s) 605, 1148
HinfI GANTC 7 cut(s) 281, 413, 424, 680, 1062, 1121, 1224
HpaII CCGG 4 cut(s) 209, 290, 641, 1253
HphI GGTGA 2 cut(s) 422, 1172
Hpy166II GTNNAC 5 cut(s) 684, 738, 821, 1102, 1531
Hpy188I TCNGA 4 cut(s) 94, 450, 999, 1346
Hpy188III TCNNGA 8 cut(s) 153, 484, 626, 761, 800, 1118, 1448, 1540
Hpy8I GTNNAC 5 cut(s) 684, 738, 821, 1102, 1531
Hpy99I CGWCG 2 cut(s) 126, 1106
HpyAV CCTTC 3 cut(s) 242, 1169, 1534
HpyCH4III ACNGT 2 cut(s) 122, 783
HpyCH4IV ACGT 2 cut(s) 1368, 1461
HpyF10VI GCNNNNNNNGC 8 cut(s) 57, 60, 132, 305, 541, 713, 910, 1334
HpyF3I CTNAG 3 cut(s) 327, 627, 801
HpySE526I ACGT 2 cut(s) 1368, 1461
Hsp92II CATG 6 cut(s) 108, 242, 421, 863, 875, 1543
Ksp22I TGATCA 1 cut(s) 634
Kzo9I GATC 6 cut(s) 64, 377, 496, 634, 1437, 1444
LmnI GCTCC 3 cut(s) 147, 827, 1426
Lsp1109I GCAGC 9 cut(s) 47, 63, 144, 253, 298, 719, 854, 1038, 1294
LweI GCATC 3 cut(s) 253, 307, 1326
MaeI CTAG 2 cut(s) 617, 1077
MaeII ACGT 2 cut(s) 1368, 1461
MaeIII GTNAC 7 cut(s) 13, 484, 554, 727, 835, 1160, 1364
MalI GATC 6 cut(s) 66, 379, 498, 636, 1439, 1446
MboI GATC 6 cut(s) 64, 377, 496, 634, 1437, 1444
MboII GAAGA 9 cut(s) 59, 377, 463, 740, 823, 986, 1057, 1145, 1311
MflI RGATCY 2 cut(s) 496, 1444
MhlI GDGCHC 1 cut(s) 832
MluCI AATT 8 cut(s) 28, 156, 335, 764, 775, 954, 963, 1278
MlyI GAGTC 3 cut(s) 689, 1130, 1218
MroXI GAANNNNTTC 1 cut(s) 993
MseI TTAA 3 cut(s) 522, 1194, 1242
MslI CAYNNNNRTG 1 cut(s) 243
MspA1I CMGCKG 2 cut(s) 710, 845
MspI CCGG 4 cut(s) 209, 290, 641, 1253
MspR9I CCNGG 6 cut(s) 146, 347, 390, 494, 825, 1358
Mva1269I GAATGC 1 cut(s) 1248
MvaI CCWGG 6 cut(s) 146, 347, 390, 494, 825, 1358
MwoI GCNNNNNNNGC 8 cut(s) 57, 60, 132, 305, 541, 713, 910, 1334
NdeI CATATG 1 cut(s) 502
NdeII GATC 6 cut(s) 64, 377, 496, 634, 1437, 1444
NlaIII CATG 6 cut(s) 108, 242, 421, 863, 875, 1543
NlaIV GGNNCC 5 cut(s) 119, 344, 498, 829, 1018
NmeAIII GCCGAG 2 cut(s) 846, 1449
NmuCI GTSAC 5 cut(s) 484, 727, 835, 1160, 1364
NspV TTCGAA 1 cut(s) 751
PagI TCATGA 1 cut(s) 1539
PctI GAATGC 1 cut(s) 1248
PdmI GAANNNNTTC 1 cut(s) 993
PfeI GAWTC 4 cut(s) 281, 413, 424, 1062
PfoI TCCNGGA 1 cut(s) 345
PinAI ACCGGT 1 cut(s) 640
PleI GAGTC 3 cut(s) 688, 1129, 1218
PpsI GAGTC 3 cut(s) 688, 1129, 1218
PpuMI RGGWCCY 1 cut(s) 1016
Psp5II RGGWCCY 1 cut(s) 1016
Psp6I CCWGG 6 cut(s) 144, 345, 388, 492, 823, 1356
PspGI CCWGG 6 cut(s) 144, 345, 388, 492, 823, 1356
PspN4I GGNNCC 5 cut(s) 119, 344, 498, 829, 1018
PspPI GGNCC 3 cut(s) 343, 1016, 1412
PspPPI RGGWCCY 1 cut(s) 1016
PstI CTGCAG 2 cut(s) 582, 844
PstNI CAGNNNCTG 1 cut(s) 1448
PsuI RGATCY 2 cut(s) 496, 1444
PvuII CAGCTG 2 cut(s) 710, 845
RsaI GTAC 4 cut(s) 952, 978, 1141, 1460
RsaNI GTAC 4 cut(s) 951, 977, 1140, 1459
RseI CAYNNNNRTG 1 cut(s) 243
SalI GTCGAC 1 cut(s) 1100
SaqAI TTAA 3 cut(s) 522, 1194, 1242
Sau3AI GATC 6 cut(s) 64, 377, 496, 634, 1437, 1444
Sau96I GGNCC 3 cut(s) 343, 1016, 1412
SchI GAGTC 3 cut(s) 689, 1130, 1218
ScrFI CCNGG 6 cut(s) 146, 347, 390, 494, 825, 1358
SduI GDGCHC 1 cut(s) 832
SfaNI GCATC 3 cut(s) 253, 307, 1326
SfcI CTRYAG 2 cut(s) 578, 840
SfuI TTCGAA 1 cut(s) 751
SinI GGWCC 2 cut(s) 343, 1016
SmiMI CAYNNNNRTG 1 cut(s) 243
Sse9I AATT 8 cut(s) 28, 156, 335, 764, 775, 954, 963, 1278
SsiI CCGC 4 cut(s) 401, 421, 1007, 1010
SspI AATATT 1 cut(s) 973
SspMI CTAG 2 cut(s) 617, 1077
StyD4I CCNGG 6 cut(s) 144, 345, 388, 492, 823, 1356
StyI CCWWGG 2 cut(s) 1020, 1035
TaaI ACNGT 2 cut(s) 122, 783
TaiI ACGT 2 cut(s) 1371, 1464
TaqI TCGA 4 cut(s) 22, 441, 751, 1101
TaqII GACCGA 1 cut(s) 218
TasI AATT 8 cut(s) 28, 156, 335, 764, 775, 954, 963, 1278
TauI GCSGC 3 cut(s) 403, 1010, 1013
TfiI GAWTC 4 cut(s) 281, 413, 424, 1062
Tru1I TTAA 3 cut(s) 522, 1194, 1242
Tru9I TTAA 3 cut(s) 522, 1194, 1242
TscAI CASTG 3 cut(s) 53, 898, 1369
TseFI GTSAC 5 cut(s) 484, 727, 835, 1160, 1364
TseI GCWGC 9 cut(s) 51, 60, 132, 266, 286, 707, 842, 1051, 1307
Tsp45I GTSAC 5 cut(s) 484, 727, 835, 1160, 1364
TspDTI ATGAA 6 cut(s) 17, 93, 261, 612, 876, 1387
TspGWI ACGGA 1 cut(s) 212
TspRI CASTG 3 cut(s) 53, 898, 1369
VpaK11BI GGWCC 2 cut(s) 343, 1016
XagI CCTNNNNNAGG 1 cut(s) 387
XapI RAATTY 3 cut(s) 28, 156, 1278
XmiI GTMKAC 2 cut(s) 1101, 1530
XmnI GAANNNNTTC 1 cut(s) 993
XspI CTAG 2 cut(s) 617, 1077
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.