Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011225.1

Orthogroup ID

OG0008714

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 3271

Gene Structure 3271 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011225.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1162 bp

atgaacttatccgcaaattttcgcgggaatttcgtccccatttcccagtgtagctcctgctgcgatcttcggtttcaaccatattttgcttcttcttcatcctctggttcttggccaaaacggtgtcgtacaagcagtgtaaagctccaccacattcccagaggtgagtttagagttttgaggaagcgagcagtgggttgtagagttaatgagacggagaaggaatcagataacaataatgatgaggagaaagaaggtcatgaacatgaaggtggagattctagtgaggcccaactagattctcagcctattgttgctaaccaaataaacaatgaggctgaaaataagcctcaagatggtgtccaggatcttgataacgtagaagttgctagtggatcacctctgccaggtgtgaagccacagcaaggtgaatcaatgcggattccgaaagaaactcttgaaattctcaagaaccaagtttttggctttgatacttttttcgtaacaagccaggatccatatgaggctggagtattatttaaaggaaatctgcgagggaaggctgctaaaagctacgaaaagatatcaaagagaatgaaggataagtttggggacgagtacaagcttttccttctagtcaatcctgaggatgatcaacctgtggcggtagtagttccacggatgacattgcagccagagacaactgctgtcccagagtgggtcgcagctggtgcttttggactggtcacattgtctaccttacttcttcggaatgttcctgaattgcaggccaatttattttcggcctttgataatgttgagctgttaaacaaaggcttacctggagcccttgtaactgcacttgttttgggggtgcatgagcttggccacattttagctgcaaacagcactggaatcaagcttggagtgccatactttgtccccagttggcagataggctcttttggtacaattacaagaattgtaaatattgtacccaagcgtgaagatcttctgaaagttgcagcagctggacctttagctggattttccttgggcattgttcttttgcttttagggttcatcttaccgcccagtgatggtgttggtgtcattgttgatgcttctgtgtttcatgagtcctttcttgcagggggtattg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

387

Amino Acids

41.99

Weight (kDa)

5.51

Isoelectric Point (pI)

38.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008714)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05740 AT5G05740 AT5G05740
fragaria_vesca	FvH4_7g24220 FvH4_7g24220 FvH4_7g24220 FvH4_7g24220
malus_domestica	MD01G1149700.v1.1 MD07G1216000.v1.1 MD07G1216100.v1.1
prunus_persica	Prupe.2G248000_v2.0.a1
pyrus_communis	pycom01g16770 pycom07g19840
rosa_chinensis	RchiOBHm_Chr1g0369791
rosa_laevigata	RLG00000027105
rosa_multiflora	Rmu_sc0011225.1_g000001
rosa_roxburghii	Rroxscaffold_4G00287380
rosa_rugosa	Rorug01G0352400
rosa_samantha	Rh1AG360900 Rh1BG324600 Rh1CG337800 Rh1DG355000
rosa_wichuraiana	Rw1G031770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	755
AccII	CGCG	1 cut(s)	24
AciI	CCGC	5 cut(s)	12, 24, 439, 665, 1091
AclWI	GGATC	4 cut(s)	375, 403, 509, 522
AcoI	YGGCCR	2 cut(s)	113, 886
AcsI	RAATTY	3 cut(s)	16, 28, 462
AfaI	GTAC	4 cut(s)	130, 620, 970, 996
AfiI	CCNNNNNNNGG	6 cut(s)	356, 407, 425, 718, 1043, 1100
AgsI	TTSAA	2 cut(s)	77, 461
AjnI	CCWGG	4 cut(s)	363, 406, 510, 841
Alw26I	GTCTC	2 cut(s)	206, 692
AlwI	GGATC	4 cut(s)	375, 403, 509, 522
AlwNI	CAGNNNCTG	1 cut(s)	1031
AoxI	GGCC	5 cut(s)	113, 288, 789, 804, 886
ApeKI	GCWGC	7 cut(s)	60, 563, 691, 725, 899, 1025, 1028
ApoI	RAATTY	3 cut(s)	16, 28, 462
Asp700I	GAANNNNTTC	1 cut(s)	1011
AspS9I	GGNCC	2 cut(s)	289, 1034
AsuHPI	GGTGA	3 cut(s)	176, 390, 440
AvaII	GGWCC	1 cut(s)	1034
AxyI	CCTNAGG	1 cut(s)	645
BalI	TGGCCA	2 cut(s)	115, 888
BamHI	GGATCC	1 cut(s)	514
BanII	GRGCYC	1 cut(s)	850
BbvI	GCAGC	7 cut(s)	47, 550, 703, 737, 886, 1037, 1040
BccI	CCATC	2 cut(s)	350, 1094
BciT130I	CCWGG	4 cut(s)	365, 408, 512, 843
BclI	TGATCA	1 cut(s)	652
BcoDI	GTCTC	2 cut(s)	206, 692
BfaI	CTAG	4 cut(s)	282, 296, 390, 635
BglII	AGATCT	1 cut(s)	1009
BisI	GCNGC	7 cut(s)	61, 564, 692, 726, 900, 1026, 1029
BlsI	GCNGC	7 cut(s)	62, 565, 693, 727, 901, 1027, 1030
Bme1390I	CCNGG	4 cut(s)	365, 408, 512, 843
Bme18I	GGWCC	1 cut(s)	1034
BmgT120I	GGNCC	2 cut(s)	289, 1034
BmiI	GGNNCC	2 cut(s)	516, 847
BmrFI	CCNGG	4 cut(s)	365, 408, 512, 843
BmrI	ACTGGG	3 cut(s)	40, 939, 1089
BmsI	GCATC	1 cut(s)	1111
BmuI	ACTGGG	3 cut(s)	40, 939, 1089
BpmI	CTGGAG	2 cut(s)	549, 864
BpuEI	CTTGAG	2 cut(s)	336, 452
BsaJI	CCNNGG	2 cut(s)	677, 1053
BsaXI	ACNNNNNCTCC	2 cut(s)	837, 867
Bsc4I	CCNNNNNNNGG	6 cut(s)	356, 407, 425, 718, 1043, 1100
Bse1I	ACTGG	5 cut(s)	46, 747, 916, 945, 1095
Bse21I	CCTNAGG	1 cut(s)	645
Bse3DI	GCAATG	1 cut(s)	686
BseBI	CCWGG	4 cut(s)	365, 408, 512, 843
BseDI	CCNNGG	2 cut(s)	677, 1053
BseGI	GGATG	3 cut(s)	98, 655, 687
BseLI	CCNNNNNNNGG	6 cut(s)	356, 407, 425, 718, 1043, 1100
BseMI	GCAATG	1 cut(s)	686
BseMII	CTCAG	2 cut(s)	317, 636
BseNI	ACTGG	5 cut(s)	46, 747, 916, 945, 1095
BseRI	GAGGAG	1 cut(s)	260
BseXI	GCAGC	7 cut(s)	47, 550, 703, 737, 886, 1037, 1040
BsgI	GTGCAG	1 cut(s)	843
Bsh1236I	CGCG	1 cut(s)	24
BshFI	GGCC	5 cut(s)	115, 290, 791, 806, 888
BslFI	GGGAC	4 cut(s)	20, 626, 695, 926
BslI	CCNNNNNNNGG	6 cut(s)	356, 407, 425, 718, 1043, 1100
BsmAI	GTCTC	2 cut(s)	206, 692
BsmBI	CGTCTC	1 cut(s)	206
BsmFI	GGGAC	4 cut(s)	20, 626, 695, 926
BsnI	GGCC	5 cut(s)	115, 290, 791, 806, 888
Bsp1286I	GDGCHC	1 cut(s)	850
Bsp143I	GATC	6 cut(s)	64, 367, 395, 514, 652, 1009
BspACI	CCGC	5 cut(s)	12, 24, 439, 665, 1091
BspANI	GGCC	5 cut(s)	115, 290, 791, 806, 888
BspCNI	CTCAG	2 cut(s)	316, 637
BspFNI	CGCG	1 cut(s)	24
BspHI	TCATGA	2 cut(s)	259, 1135
BspLI	GGNNCC	2 cut(s)	516, 847
BspPI	GGATC	4 cut(s)	375, 403, 509, 522
BsrDI	GCAATG	1 cut(s)	686
BsrI	ACTGG	5 cut(s)	46, 747, 916, 945, 1095
BssECI	CCNNGG	2 cut(s)	677, 1053
BssMI	GATC	6 cut(s)	64, 367, 395, 514, 652, 1009
BssT1I	CCWWGG	1 cut(s)	1053
Bst2UI	CCWGG	4 cut(s)	365, 408, 512, 843
Bst4CI	ACNGT	1 cut(s)	123
BstAPI	GCANNNNNTGC	1 cut(s)	731
BstC8I	GCNNGC	2 cut(s)	189, 789
BstDEI	CTNAG	2 cut(s)	303, 645
BstDSI	CCRYGG	1 cut(s)	677
BstENI	CCTNNNNNAGG	1 cut(s)	405
BstF5I	GGATG	3 cut(s)	98, 655, 687
BstFNI	CGCG	1 cut(s)	24
BstKTI	GATC	6 cut(s)	67, 370, 398, 517, 655, 1012
BstMAI	GTCTC	2 cut(s)	206, 692
BstMBI	GATC	6 cut(s)	64, 367, 395, 514, 652, 1009
BstMWI	GCNNNNNNNGC	3 cut(s)	60, 731, 928
BstNI	CCWGG	4 cut(s)	365, 408, 512, 843
BstSCI	CCNGG	4 cut(s)	363, 406, 510, 841
BstUI	CGCG	1 cut(s)	24
BstV1I	GCAGC	7 cut(s)	47, 550, 703, 737, 886, 1037, 1040
BstX2I	RGATCY	3 cut(s)	367, 514, 1009
BstXI	CCANNNNNNTGG	1 cut(s)	482
BstYI	RGATCY	3 cut(s)	367, 514, 1009
Bsu36I	CCTNAGG	1 cut(s)	645
BsuRI	GGCC	5 cut(s)	115, 290, 791, 806, 888
BtgI	CCRYGG	1 cut(s)	677
BtsCI	GGATG	3 cut(s)	98, 655, 687
BtsI	GCAGTG	2 cut(s)	142, 198
BtsIMutI	CAGTG	5 cut(s)	53, 142, 198, 909, 1102
Cac8I	GCNNGC	2 cut(s)	189, 789
CaiI	CAGNNNCTG	1 cut(s)	1031
CciI	TCATGA	2 cut(s)	259, 1135
Cfr13I	GGNCC	2 cut(s)	289, 1034
Csp6I	GTAC	4 cut(s)	129, 619, 969, 995
CviAII	CATG	4 cut(s)	260, 266, 878, 1136
CviQI	GTAC	4 cut(s)	129, 619, 969, 995
DdeI	CTNAG	2 cut(s)	303, 645
DpnI	GATC	6 cut(s)	66, 369, 397, 516, 654, 1011
DpnII	GATC	6 cut(s)	64, 367, 395, 514, 652, 1009
DraI	TTTAAA	1 cut(s)	541
EaeI	YGGCCR	2 cut(s)	113, 886
Eco130I	CCWWGG	1 cut(s)	1053
Eco24I	GRGCYC	1 cut(s)	850
Eco32I	GATATC	1 cut(s)	585
Eco47I	GGWCC	1 cut(s)	1034
Eco81I	CCTNAGG	1 cut(s)	645
EcoNI	CCTNNNNNAGG	1 cut(s)	405
EcoRII	CCWGG	4 cut(s)	363, 406, 510, 841
EcoRV	GATATC	1 cut(s)	585
EcoT14I	CCWWGG	1 cut(s)	1053
EcoT38I	GRGCYC	1 cut(s)	850
ErhI	CCWWGG	1 cut(s)	1053
Esp3I	CGTCTC	1 cut(s)	206
FaeI	CATG	4 cut(s)	263, 269, 881, 1139
FaiI	YATR	8 cut(s)	82, 261, 267, 520, 522, 879, 934, 1137
FalI	AAGNNNNNCTT	2 cut(s)	441, 473
FaqI	GGGAC	4 cut(s)	20, 626, 695, 926
FatI	CATG	4 cut(s)	259, 265, 877, 1135
FauI	CCCGC	1 cut(s)	17
FauNDI	CATATG	1 cut(s)	520
FbaI	TGATCA	1 cut(s)	652
FblI	GTMKAC	1 cut(s)	755
Fnu4HI	GCNGC	7 cut(s)	61, 564, 692, 726, 900, 1026, 1029
FokI	GGATG	3 cut(s)	85, 662, 694
FriOI	GRGCYC	1 cut(s)	850
Fsp4HI	GCNGC	7 cut(s)	61, 564, 692, 726, 900, 1026, 1029
FspBI	CTAG	4 cut(s)	282, 296, 390, 635
GluI	GCNGC	7 cut(s)	61, 564, 692, 726, 900, 1026, 1029
GsuI	CTGGAG	2 cut(s)	549, 864
HaeIII	GGCC	5 cut(s)	115, 290, 791, 806, 888
Hin1II	CATG	4 cut(s)	263, 269, 881, 1139
HindIII	AAGCTT	2 cut(s)	623, 920
HinfI	GANTC	7 cut(s)	224, 278, 299, 431, 442, 915, 1139
HphI	GGTGA	3 cut(s)	176, 390, 440
Hpy166II	GTNNAC	1 cut(s)	756
Hpy188I	TCNGA	4 cut(s)	229, 447, 771, 1017
Hpy188III	TCNNGA	8 cut(s)	260, 353, 371, 458, 469, 644, 779, 1136
Hpy8I	GTNNAC	1 cut(s)	756
HpyAV	CCTTC	6 cut(s)	214, 248, 263, 553, 592, 641
HpyCH4III	ACNGT	1 cut(s)	123
HpyCH4IV	ACGT	1 cut(s)	378
HpyCH4V	TGCA	7 cut(s)	691, 787, 860, 877, 902, 1025, 1151
HpyF10VI	GCNNNNNNNGC	3 cut(s)	60, 731, 928
HpyF3I	CTNAG	2 cut(s)	303, 645
HpySE526I	ACGT	1 cut(s)	378
Hsp92II	CATG	4 cut(s)	263, 269, 881, 1139
Ksp22I	TGATCA	1 cut(s)	652
Kzo9I	GATC	6 cut(s)	64, 367, 395, 514, 652, 1009
LmnI	GCTCC	3 cut(s)	59, 150, 845
Lsp1109I	GCAGC	7 cut(s)	47, 550, 703, 737, 886, 1037, 1040
LweI	GCATC	1 cut(s)	1111
MaeI	CTAG	4 cut(s)	282, 296, 390, 635
MaeII	ACGT	1 cut(s)	378
MaeIII	GTNAC	3 cut(s)	502, 745, 853
MalI	GATC	6 cut(s)	66, 369, 397, 516, 654, 1011
MboI	GATC	6 cut(s)	64, 367, 395, 514, 652, 1009
MboII	GAAGA	6 cut(s)	59, 84, 87, 758, 1004, 1019
MflI	RGATCY	3 cut(s)	367, 514, 1009
MhlI	GDGCHC	1 cut(s)	850
MlsI	TGGCCA	2 cut(s)	115, 888
MluCI	AATT	7 cut(s)	16, 28, 462, 782, 793, 972, 981
MluNI	TGGCCA	2 cut(s)	115, 888
MlyI	GAGTC	1 cut(s)	1148
Mox20I	TGGCCA	2 cut(s)	115, 888
MroXI	GAANNNNTTC	1 cut(s)	1011
MscI	TGGCCA	2 cut(s)	115, 888
MseI	TTAA	3 cut(s)	207, 540, 827
MslI	CAYNNNNRTG	2 cut(s)	264, 270
Msp20I	TGGCCA	2 cut(s)	115, 888
MspA1I	CMGCKG	2 cut(s)	728, 1031
MspR9I	CCNGG	4 cut(s)	365, 408, 512, 843
MvaI	CCWGG	4 cut(s)	365, 408, 512, 843
MvnI	CGCG	1 cut(s)	24
MwoI	GCNNNNNNNGC	3 cut(s)	60, 731, 928
NdeI	CATATG	1 cut(s)	520
NdeII	GATC	6 cut(s)	64, 367, 395, 514, 652, 1009
NlaIII	CATG	4 cut(s)	263, 269, 881, 1139
NlaIV	GGNNCC	2 cut(s)	516, 847
NmuCI	GTSAC	1 cut(s)	745
PagI	TCATGA	2 cut(s)	259, 1135
PdmI	GAANNNNTTC	1 cut(s)	1011
PfeI	GAWTC	6 cut(s)	224, 278, 299, 431, 442, 915
PfoI	TCCNGGA	1 cut(s)	363
PkrI	GCNGC	7 cut(s)	62, 565, 693, 727, 901, 1027, 1030
PleI	GAGTC	1 cut(s)	1147
PpsI	GAGTC	1 cut(s)	1147
Psp6I	CCWGG	4 cut(s)	363, 406, 510, 841
PspGI	CCWGG	4 cut(s)	363, 406, 510, 841
PspN4I	GGNNCC	2 cut(s)	516, 847
PspPI	GGNCC	2 cut(s)	289, 1034
PstNI	CAGNNNCTG	1 cut(s)	1031
PsuI	RGATCY	3 cut(s)	367, 514, 1009
PvuII	CAGCTG	2 cut(s)	728, 1031
RsaI	GTAC	4 cut(s)	130, 620, 970, 996
RsaNI	GTAC	4 cut(s)	129, 619, 969, 995
RseI	CAYNNNNRTG	2 cut(s)	264, 270
SaqAI	TTAA	3 cut(s)	207, 540, 827
SatI	GCNGC	7 cut(s)	61, 564, 692, 726, 900, 1026, 1029
Sau3AI	GATC	6 cut(s)	64, 367, 395, 514, 652, 1009
Sau96I	GGNCC	2 cut(s)	289, 1034
SchI	GAGTC	1 cut(s)	1148
ScrFI	CCNGG	4 cut(s)	365, 408, 512, 843
SduI	GDGCHC	1 cut(s)	850
SfaNI	GCATC	1 cut(s)	1111
SinI	GGWCC	1 cut(s)	1034
SmiMI	CAYNNNNRTG	2 cut(s)	264, 270
SmlI	CTYRAG	2 cut(s)	351, 467
SmoI	CTYRAG	2 cut(s)	351, 467
Sse9I	AATT	7 cut(s)	16, 28, 462, 782, 793, 972, 981
SsiI	CCGC	5 cut(s)	12, 24, 439, 665, 1091
SspI	AATATT	1 cut(s)	991
SspMI	CTAG	4 cut(s)	282, 296, 390, 635
StyD4I	CCNGG	4 cut(s)	363, 406, 510, 841
StyI	CCWWGG	1 cut(s)	1053
TaaI	ACNGT	1 cut(s)	123
TaiI	ACGT	1 cut(s)	381
TasI	AATT	7 cut(s)	16, 28, 462, 782, 793, 972, 981
TatI	WGTACW	1 cut(s)	618
TfiI	GAWTC	6 cut(s)	224, 278, 299, 431, 442, 915
Tru1I	TTAA	3 cut(s)	207, 540, 827
Tru9I	TTAA	3 cut(s)	207, 540, 827
TscAI	CASTG	5 cut(s)	53, 142, 198, 916, 1102
TseFI	GTSAC	1 cut(s)	745
TseI	GCWGC	7 cut(s)	60, 563, 691, 725, 899, 1025, 1028
Tsp45I	GTSAC	1 cut(s)	745
TspDTI	ATGAA	7 cut(s)	17, 87, 276, 282, 611, 1072, 1124
TspGWI	ACGGA	2 cut(s)	230, 694
TspRI	CASTG	5 cut(s)	53, 142, 198, 916, 1102
VpaK11BI	GGWCC	1 cut(s)	1034
XagI	CCTNNNNNAGG	1 cut(s)	405
XapI	RAATTY	3 cut(s)	16, 28, 462
XmiI	GTMKAC	1 cut(s)	755
XmnI	GAANNNNTTC	1 cut(s)	1011
XspI	CTAG	4 cut(s)	282, 296, 390, 635

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.