Rorug01G0352400

zinc metalloprotease EGY2, chloroplastic

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Forward (+)
46930926 .. 46934367
3442 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0352400.1

Sequence Viewer

Length: 1824 bp
ATGGATAATTCCCAAGTAGCTGTAGTTGTGGAGAACGGGAAAGAGAAAGCTGCAAGAAATACAGATTCGAGTAAGAGATGGCCGACGATGAAGGAGATTACAGATCCTGAGGGGCCTTTCTTTCCCAAGTGGAGAATGATATTTATAGTGTCATGTCTGTTTGCTGTACTATTGGATCCTTTGTTCCTCTACATTCCTATGATCAATGATGATGCCAAGTGCATGAGTTTGGATAGAAACTTGAAGATAGCAGCTCCTGTCTTCCGAATGGTCACAGATGTCTTTTACATACTGAATATTATTCTTCAAGTTTATAAATCCAAGAAATGGTTAGCTTTCATCAATGCATTTCGGTCAGGAAGTTGCTCATCTGTAGTATCTAACTTGAGGAGTATCTCACCAAGCATAGCTAAGACGATGTGGAAGTCATACATACTAATCGATGTTTTCGCTGTTCTTCCCCTTCCACAGGTAGTAATTCTCATCTTCTTTTCAAAAATGAGGGGCGTGAGATCTTTGAATACAAGGAAGCTTCTGAGCTTTCTTGTTCTGGTGCAATATGTTCCACGGGTCCTTCGCATCTACCTATCGTGCAAGGAACCTAAAAAGTCTTCCAAAGAAGAGATTGCAACATGGGTCAAAGGTGTACTCAACTTCTTTATGTACATCCTTGCCAGTCATGTACTTGGAGCCTGTTGGTACTTTTTTTCTGTTGAAAGACTCACAAATTGTTGGCAACATGCCTGTCAAAATGAAAATGGATGTGTTCCTAGTACTTTTGACTGTCACGATCACAATTCATTGAGAAATACAACATTACTGAATGACTTATGCCCAGTAGATCCACCAAATGCAAAGCTGTTTGATTTTGGTATCTTTCTTGATGTCCTTCAGTCTGGTATACTGGGTTCAACAGATTATCCAAAAAAGTTGACGAACTGTTTCTGGTGGGGCCTGCGAAATCTTAGTTCTCTTGGTTCAAATCTCCAGACCAGTACCAATACATGGGAAAACCTCTTTGCGACTCTAATTTCTATTATCGGCTTGCTACTTTTTCTATATCTTATTGGAAATTTGCAGATGTATATGCAGACGGATGCTGCAATATTAGAGTCGAACAGACACAAGAGGAAGGTCAAAAGGGCTGTGGAAAAGAAAGGTCGAGAGTTAGACTTGTGGTTATTGAAAAATGGCATCCCTAGTAGAAGAAAAAATGAGATGATGGAAAGGGTACAGCAAGAGCTTGCCGAGAGGAGAAATGTTGATGTGGAAAACATTCTCTCTATTCTTCCCGAGGAACTTCAGAGCTATATCAAAAATTTGTTGCCATTGGCTCGGCTAAAGAAAGTACCACTGCTTCAAACTATGGATGAAGAAGTATTGAAAGAAATCAGTGAGTATCTTGAACCCAAAAAATTTGAGATTACTGGGCGGGAATATCTTTCTAGAGATGGGGAACCACTTGAAAAGATGATATTCATAGTTGAGGGAGATCTTGGCGTTGAAAGAAGAAATGTTGCCGGTCGTGACCTTTTATACCCGGGAGACTTCTATGGAGCAGAACTTCTGAAGTGGGTATCAGTATCAAATACCTCTTTTCCCGCCACATTACCCTTATCCATAGATTCTTCTTATGTCACCAACAATGATAGTGTTCTTTTTCTCAAGGCTGACGACTTGAAGAGTGTAGTATCTAAATTCAGGTCGCGTTTCAGCAAGGAGATCACACTTCCATCCAATTTTCAACCGGAAGTTCTGACTTCTTTCCAGCTGACTATGCTTAAGACAGTAAGTTCCTTTGTCTATCAAGAAATTAGTGTCTAG

Protein Analysis

607

Amino Acids

69.6

Weight (kDa)

8.94

Isoelectric Point (pI)

50.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ion_trans PF00520 46 - 365 1.3e-08 Ion transport protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 315
AccB7I CCANNNNNTGG 2 cut(s) 327, 1005
AccI GTMKAC 1 cut(s) 901
AccII CGCG 1 cut(s) 1708
AciI CCGC 2 cut(s) 1432, 1602
AclWI GGATC 4 cut(s) 98, 170, 183, 836
AcoI YGGCCR 1 cut(s) 80
AcsI RAATTY 4 cut(s) 1072, 1318, 1415, 1697
AcuI CTGAAG 3 cut(s) 875, 1286, 1589
AfaI GTAC 9 cut(s) 168, 648, 665, 684, 701, 775, 997, 1233, 1350
AfiI CCNNNNNNNGG 3 cut(s) 327, 469, 1005
AflII CTTAAG 1 cut(s) 1781
AloI GAACNNNNNNTCC 2 cut(s) 167, 199
Alw26I GTCTC 1 cut(s) 1539
AlwI GGATC 4 cut(s) 98, 170, 183, 836
AlwNI CAGNNNCTG 2 cut(s) 107, 257
Ama87I CYCGRG 2 cut(s) 1292, 1540
AoxI GGCC 3 cut(s) 80, 113, 952
ApeKI GCWGC 3 cut(s) 50, 251, 1100
ApoI RAATTY 4 cut(s) 1072, 1318, 1415, 1697
Asp700I GAANNNNTTC 2 cut(s) 941, 1275
AspS9I GGNCC 3 cut(s) 113, 571, 952
AsuC2I CCSGG 2 cut(s) 1541, 1542
AsuHPI GGTGA 2 cut(s) 390, 1630
AvaI CYCGRG 2 cut(s) 1292, 1540
AvaII GGWCC 1 cut(s) 571
AxyI CCTNAGG 1 cut(s) 108
BamHI GGATCC 1 cut(s) 175
BarI GAAGNNNNNNTAC 2 cut(s) 1341, 1373
BbsI GAAGAC 2 cut(s) 253, 603
BbvI GCAGC 3 cut(s) 37, 263, 1087
BccI CCATC 4 cut(s) 72, 1216, 1445, 1741
BclI TGATCA 1 cut(s) 201
BcnI CCSGG 2 cut(s) 1541, 1542
BcoDI GTCTC 1 cut(s) 1539
BfaI CTAG 4 cut(s) 771, 1200, 1446, 1822
BfmI CTRYAG 2 cut(s) 21, 372
BfrI CTTAAG 1 cut(s) 1781
BglII AGATCT 2 cut(s) 512, 1492
BisI GCNGC 3 cut(s) 51, 252, 1101
BlsI GCNGC 3 cut(s) 52, 253, 1102
BmcAI AGTACT 1 cut(s) 775
Bme1390I CCNGG 2 cut(s) 1541, 1542
Bme18I GGWCC 1 cut(s) 571
BmeT110I CYCGRG 2 cut(s) 1292, 1540
BmgT120I GGNCC 3 cut(s) 113, 571, 952
BmiI GGNNCC 7 cut(s) 114, 177, 572, 600, 691, 953, 1458
BmrFI CCNGG 2 cut(s) 1541, 1542
BmrI ACTGGG 3 cut(s) 830, 914, 1437
BmsI GCATC 4 cut(s) 202, 588, 1087, 1203
BmuI ACTGGG 3 cut(s) 830, 914, 1437
BpiI GAAGAC 2 cut(s) 253, 603
BpmI CTGGAG 1 cut(s) 971
BpuEI CTTGAG 2 cut(s) 406, 1649
BpuMI CCSGG 2 cut(s) 1541, 1542
Bsa29I ATCGAT 1 cut(s) 441
BsaJI CCNNGG 3 cut(s) 566, 1293, 1540
BsaWI WCCGGW 1 cut(s) 1747
Bsc4I CCNNNNNNNGG 3 cut(s) 327, 469, 1005
Bse118I RCCGGY 1 cut(s) 1520
Bse1I ACTGG 5 cut(s) 675, 836, 909, 993, 1432
Bse21I CCTNAGG 1 cut(s) 108
BseCI ATCGAT 1 cut(s) 441
BseDI CCNNGG 3 cut(s) 566, 1293, 1540
BseGI GGATG 6 cut(s) 666, 767, 1102, 1194, 1375, 1733
BseLI CCNNNNNNNGG 3 cut(s) 327, 469, 1005
BseMII CTCAG 2 cut(s) 99, 527
BseNI ACTGG 5 cut(s) 675, 836, 909, 993, 1432
BseRI GAGGAG 2 cut(s) 403, 1267
BseXI GCAGC 3 cut(s) 37, 263, 1087
Bsh1236I CGCG 1 cut(s) 1708
Bsh1285I CGRYCG 1 cut(s) 1525
BshFI GGCC 3 cut(s) 82, 115, 954
BshVI ATCGAT 1 cut(s) 441
BsiEI CGRYCG 1 cut(s) 1525
BsiHKCI CYCGRG 2 cut(s) 1292, 1540
BsiSI CCGG 3 cut(s) 1521, 1541, 1748
BslI CCNNNNNNNGG 3 cut(s) 327, 469, 1005
BsmAI GTCTC 1 cut(s) 1539
BsnI GGCC 3 cut(s) 82, 115, 954
BsoBI CYCGRG 2 cut(s) 1292, 1540
Bsp1407I TGTACA 1 cut(s) 663
Bsp143I GATC 8 cut(s) 103, 175, 201, 512, 790, 841, 1492, 1722
BspACI CCGC 2 cut(s) 1432, 1602
BspANI GGCC 3 cut(s) 82, 115, 954
BspCNI CTCAG 2 cut(s) 100, 528
BspDI ATCGAT 1 cut(s) 441
BspFNI CGCG 1 cut(s) 1708
BspLI GGNNCC 7 cut(s) 114, 177, 572, 600, 691, 953, 1458
BspPI GGATC 4 cut(s) 98, 170, 183, 836
BspTI CTTAAG 1 cut(s) 1781
BsrFI RCCGGY 1 cut(s) 1520
BsrGI TGTACA 1 cut(s) 663
BsrI ACTGG 5 cut(s) 675, 836, 909, 993, 1432
BssAI RCCGGY 1 cut(s) 1520
BssECI CCNNGG 3 cut(s) 566, 1293, 1540
BssMI GATC 8 cut(s) 103, 175, 201, 512, 790, 841, 1492, 1722
BssNAI GTATAC 1 cut(s) 902
Bst1107I GTATAC 1 cut(s) 902
Bst4CI ACNGT 3 cut(s) 785, 941, 1789
Bst6I CTCTTC 2 cut(s) 615, 1676
BstAFI CTTAAG 1 cut(s) 1781
BstAUI TGTACA 1 cut(s) 663
BstC8I GCNNGC 3 cut(s) 956, 1046, 1245
BstDEI CTNAG 4 cut(s) 108, 411, 536, 965
BstDSI CCRYGG 1 cut(s) 566
BstENI CCTNNNNNAGG 1 cut(s) 467
BstF5I GGATG 6 cut(s) 666, 767, 1102, 1194, 1375, 1733
BstFNI CGCG 1 cut(s) 1708
BstKTI GATC 8 cut(s) 106, 178, 204, 515, 793, 844, 1495, 1725
BstMAI GTCTC 1 cut(s) 1539
BstMBI GATC 8 cut(s) 103, 175, 201, 512, 790, 841, 1492, 1722
BstMCI CGRYCG 1 cut(s) 1525
BstMWI GCNNNNNNNGC 1 cut(s) 1777
BstNSI RCATGY 1 cut(s) 743
BstSCI CCNGG 2 cut(s) 1539, 1540
BstSFI CTRYAG 2 cut(s) 21, 372
BstUI CGCG 1 cut(s) 1708
BstV1I GCAGC 3 cut(s) 37, 263, 1087
BstV2I GAAGAC 2 cut(s) 253, 603
BstX2I RGATCY 5 cut(s) 103, 175, 512, 841, 1492
BstYI RGATCY 5 cut(s) 103, 175, 512, 841, 1492
BstZ17I GTATAC 1 cut(s) 902
Bsu15I ATCGAT 1 cut(s) 441
Bsu36I CCTNAGG 1 cut(s) 108
BsuRI GGCC 3 cut(s) 82, 115, 954
BsuTUI ATCGAT 1 cut(s) 441
BtgI CCRYGG 1 cut(s) 566
BtsCI GGATG 6 cut(s) 666, 767, 1102, 1194, 1375, 1733
BtsI GCAGTG 1 cut(s) 1352
BtsIMutI CAGTG 2 cut(s) 1352, 1399
Cac8I GCNNGC 3 cut(s) 956, 1046, 1245
CaiI CAGNNNCTG 2 cut(s) 107, 257
Cfr10I RCCGGY 1 cut(s) 1520
Cfr13I GGNCC 3 cut(s) 113, 571, 952
Cfr9I CCCGGG 1 cut(s) 1540
ClaI ATCGAT 1 cut(s) 441
Csp6I GTAC 9 cut(s) 167, 647, 664, 683, 700, 774, 996, 1232, 1349
CviAII CATG 6 cut(s) 153, 223, 633, 680, 740, 1005
CviQI GTAC 9 cut(s) 167, 647, 664, 683, 700, 774, 996, 1232, 1349
DdeI CTNAG 4 cut(s) 108, 411, 536, 965
DpnI GATC 8 cut(s) 105, 177, 203, 514, 792, 843, 1494, 1724
DpnII GATC 8 cut(s) 103, 175, 201, 512, 790, 841, 1492, 1722
EaeI YGGCCR 1 cut(s) 80
Eam1104I CTCTTC 2 cut(s) 615, 1676
EarI CTCTTC 2 cut(s) 615, 1676
Eco47I GGWCC 1 cut(s) 571
Eco57I CTGAAG 3 cut(s) 875, 1286, 1589
Eco81I CCTNAGG 1 cut(s) 108
Eco88I CYCGRG 2 cut(s) 1292, 1540
EcoNI CCTNNNNNAGG 1 cut(s) 467
EcoO109I RGGNCCY 3 cut(s) 113, 571, 952
EcoT22I ATGCAT 1 cut(s) 349
FaeI CATG 6 cut(s) 156, 226, 636, 683, 743, 1008
FatI CATG 6 cut(s) 152, 222, 632, 679, 739, 1004
FauI CCCGC 2 cut(s) 1425, 1609
FbaI TGATCA 1 cut(s) 201
FblI GTMKAC 1 cut(s) 901
Fnu4HI GCNGC 3 cut(s) 51, 252, 1101
FokI GGATG 6 cut(s) 653, 774, 1109, 1181, 1382, 1720
Fsp4HI GCNGC 3 cut(s) 51, 252, 1101
FspBI CTAG 4 cut(s) 771, 1200, 1446, 1822
GluI GCNGC 3 cut(s) 51, 252, 1101
GsuI CTGGAG 1 cut(s) 971
HaeIII GGCC 3 cut(s) 82, 115, 954
HapII CCGG 3 cut(s) 1521, 1541, 1748
Hin1II CATG 6 cut(s) 156, 226, 636, 683, 743, 1008
HincII GTYRAC 1 cut(s) 933
HindII GTYRAC 1 cut(s) 933
HindIII AAGCTT 1 cut(s) 530
HinfI GANTC 5 cut(s) 65, 720, 1024, 1112, 1625
HpaII CCGG 3 cut(s) 1521, 1541, 1748
HphI GGTGA 2 cut(s) 390, 1630
Hpy166II GTNNAC 3 cut(s) 647, 902, 933
Hpy188I TCNGA 5 cut(s) 266, 537, 1305, 1569, 1758
Hpy8I GTNNAC 3 cut(s) 647, 902, 933
Hpy99I CGWCG 1 cut(s) 88
HpyAV CCTTC 5 cut(s) 85, 473, 584, 899, 1126
HpyCH4III ACNGT 3 cut(s) 785, 941, 1789
HpyF10VI GCNNNNNNNGC 1 cut(s) 1777
HpyF3I CTNAG 4 cut(s) 108, 411, 536, 965
Hsp92II CATG 6 cut(s) 156, 226, 636, 683, 743, 1008
Ksp22I TGATCA 1 cut(s) 201
Kzo9I GATC 8 cut(s) 103, 175, 201, 512, 790, 841, 1492, 1722
LmnI GCTCC 3 cut(s) 259, 689, 1556
Lsp1109I GCAGC 3 cut(s) 37, 263, 1087
LweI GCATC 4 cut(s) 202, 588, 1087, 1203
MaeI CTAG 4 cut(s) 771, 1200, 1446, 1822
MaeIII GTNAC 4 cut(s) 271, 785, 1526, 1636
MalI GATC 8 cut(s) 105, 177, 203, 514, 792, 843, 1494, 1724
MboI GATC 8 cut(s) 103, 175, 201, 512, 790, 841, 1492, 1722
MflI RGATCY 5 cut(s) 103, 175, 512, 841, 1492
MlyI GAGTC 3 cut(s) 714, 1018, 1121
Mph1103I ATGCAT 1 cut(s) 349
MroXI GAANNNNTTC 2 cut(s) 941, 1275
MseI TTAA 1 cut(s) 1782
MslI CAYNNNNRTG 1 cut(s) 197
MspA1I CMGCKG 1 cut(s) 1771
MspCI CTTAAG 1 cut(s) 1781
MspI CCGG 3 cut(s) 1521, 1541, 1748
MspR9I CCNGG 2 cut(s) 1541, 1542
MvnI CGCG 1 cut(s) 1708
MwoI GCNNNNNNNGC 1 cut(s) 1777
NciI CCSGG 2 cut(s) 1541, 1542
NdeII GATC 8 cut(s) 103, 175, 201, 512, 790, 841, 1492, 1722
NlaIII CATG 6 cut(s) 156, 226, 636, 683, 743, 1008
NlaIV GGNNCC 7 cut(s) 114, 177, 572, 600, 691, 953, 1458
NmeAIII GCCGAG 2 cut(s) 1273, 1315
NmuCI GTSAC 4 cut(s) 271, 785, 1526, 1636
NsiI ATGCAT 1 cut(s) 349
NspI RCATGY 1 cut(s) 743
PdmI GAANNNNTTC 2 cut(s) 941, 1275
PfeI GAWTC 2 cut(s) 65, 1625
PflMI CCANNNNNTGG 2 cut(s) 327, 1005
PkrI GCNGC 3 cut(s) 52, 253, 1102
PleI GAGTC 3 cut(s) 714, 1018, 1120
PpsI GAGTC 3 cut(s) 714, 1018, 1120
PpuMI RGGWCCY 1 cut(s) 571
PsiI TTATAA 1 cut(s) 315
Psp5II RGGWCCY 1 cut(s) 571
PspN4I GGNNCC 7 cut(s) 114, 177, 572, 600, 691, 953, 1458
PspPI GGNCC 3 cut(s) 113, 571, 952
PspPPI RGGWCCY 1 cut(s) 571
PsrI GAACNNNNNNTAC 2 cut(s) 892, 924
PstNI CAGNNNCTG 2 cut(s) 107, 257
PsuI RGATCY 5 cut(s) 103, 175, 512, 841, 1492
PvuII CAGCTG 1 cut(s) 1771
RsaI GTAC 9 cut(s) 168, 648, 665, 684, 701, 775, 997, 1233, 1350
RsaNI GTAC 9 cut(s) 167, 647, 664, 683, 700, 774, 996, 1232, 1349
RseI CAYNNNNRTG 1 cut(s) 197
SaqAI TTAA 1 cut(s) 1782
SatI GCNGC 3 cut(s) 51, 252, 1101
Sau3AI GATC 8 cut(s) 103, 175, 201, 512, 790, 841, 1492, 1722
Sau96I GGNCC 3 cut(s) 113, 571, 952
ScaI AGTACT 1 cut(s) 775
SchI GAGTC 3 cut(s) 714, 1018, 1121
ScrFI CCNGG 2 cut(s) 1541, 1542
SfaNI GCATC 4 cut(s) 202, 588, 1087, 1203
SfcI CTRYAG 2 cut(s) 21, 372
SinI GGWCC 1 cut(s) 571
SmaI CCCGGG 1 cut(s) 1542
SmiMI CAYNNNNRTG 1 cut(s) 197
SmlI CTYRAG 3 cut(s) 385, 1664, 1781
SmoI CTYRAG 3 cut(s) 385, 1664, 1781
SsiI CCGC 2 cut(s) 1432, 1602
SspI AATATT 2 cut(s) 298, 1107
SspMI CTAG 4 cut(s) 771, 1200, 1446, 1822
StyD4I CCNGG 2 cut(s) 1539, 1540
TaaI ACNGT 3 cut(s) 785, 941, 1789
TaqI TCGA 4 cut(s) 68, 441, 1115, 1162
TaqII GACCGA 1 cut(s) 342
TatI WGTACW 5 cut(s) 166, 646, 663, 682, 773
TfiI GAWTC 2 cut(s) 65, 1625
Tru1I TTAA 1 cut(s) 1782
Tru9I TTAA 1 cut(s) 1782
TscAI CASTG 2 cut(s) 1359, 1399
TseFI GTSAC 4 cut(s) 271, 785, 1526, 1636
TseI GCWGC 3 cut(s) 50, 251, 1100
Tsp45I GTSAC 4 cut(s) 271, 785, 1526, 1636
TspDTI ATGAA 6 cut(s) 104, 328, 768, 789, 1386, 1468
TspGWI ACGGA 1 cut(s) 1109
TspMI CCCGGG 1 cut(s) 1540
TspRI CASTG 2 cut(s) 1359, 1399
Van91I CCANNNNNTGG 2 cut(s) 327, 1005
Vha464I CTTAAG 1 cut(s) 1781
VpaK11BI GGWCC 1 cut(s) 571
XagI CCTNNNNNAGG 1 cut(s) 467
XapI RAATTY 4 cut(s) 1072, 1318, 1415, 1697
XbaI TCTAGA 1 cut(s) 1445
XceI RCATGY 1 cut(s) 743
XmaI CCCGGG 1 cut(s) 1540
XmiI GTMKAC 1 cut(s) 901
XmnI GAANNNNTTC 2 cut(s) 941, 1275
XspI CTAG 4 cut(s) 771, 1200, 1446, 1822
ZrmI AGTACT 1 cut(s) 775
Zsp2I ATGCAT 1 cut(s) 349
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.