Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0008714

Physical Location & Seq

Genomic Coordinates Forward (+)

29327292 .. 29329503

Gene Structure 2212 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1216000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGAACTTCTCCGCAACCTTTCGGGGGAATTTCGTCCCCTTATCGCAGTGCAGCTCTTGCTGCGATCTTCGTTTTCAGCCCTATTTCGCTTCGGGAACCTCTTCTTGGCAAAAACGAAATCGTCGTAGAAGCAGCTTGAAGCTCCACCAGGTTTCGAGATTTTTGAGGAAGCGGGAGGTTGTTTGTAGAGTGAGTGAGACGGAGACCGAACCGCCACCGGATAGCAATAACGATGAGGAAAAACAAGGACATGAAAATGAGGATGGAGATTCTGATGCCGTCCATCTCGCTTCGCAGCCGATAGTTGCAGACCAAGTAAACAATGATGCTGAAACTGAGGCTCAACAGGAAGTTGAAAATGTAGAAGTTTCCAGTGGATCGCCTCTTCCAGGTGTGAAGCCGGGTGAATCCATCCGGATTCCAAAGGAAACAATCGATATTCTTAAGAACCAAGTTTTCGGCTTTGATACCTTTTTCGTGACAGGTCAGGATCCATATGAGACTGGAGTATTGTTTAAAGGAAACCTGCGAGGAGTGCCTGCTAAAAGTTATGAAAAGATATCAAAGAGAATGCAGGACAAGTTTGGTGATGAATATAAGCTTTTCCTTCTAGTCAATCCTGAGGATGATCAACCAGTGGCCGTTGTAGTTCCACGAAGGACATTACAGCCAGAGTCAACTGGTGATTCTTTAGCTCCTGCCCTGTTACAGGATTTCCGTGGAAGTTCCGTCCCAGAGTGGTTTGCAGCTGGTGCTTTTGGATTGGTCACGTTGTTTACCTTACTTCTTCAAAATGTTCCTGAATTGCAGTCCAATTTACAGTATGCAAGTTTCTTTTCTTGTATTTTCATAATACTAAGTCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

289

Amino Acids

32.19

Weight (kDa)

4.95

Isoelectric Point (pI)

58.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008714)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05740 AT5G05740 AT5G05740
fragaria_vesca	FvH4_7g24220 FvH4_7g24220 FvH4_7g24220 FvH4_7g24220
malus_domestica	MD01G1149700.v1.1 MD07G1216000.v1.1 MD07G1216100.v1.1
prunus_persica	Prupe.2G248000_v2.0.a1
pyrus_communis	pycom01g16770 pycom07g19840
rosa_chinensis	RchiOBHm_Chr1g0369791
rosa_laevigata	RLG00000027105
rosa_multiflora	Rmu_sc0011225.1_g000001
rosa_roxburghii	Rroxscaffold_4G00287380
rosa_rugosa	Rorug01G0352400
rosa_samantha	Rh1AG360900 Rh1BG324600 Rh1CG337800 Rh1DG355000
rosa_wichuraiana	Rw1G031770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	534
AccIII	TCCGGA	1 cut(s)	414
AciI	CCGC	3 cut(s)	12, 172, 212
AclWI	GGATC	3 cut(s)	385, 485, 498
AcoI	YGGCCR	1 cut(s)	639
AcsI	RAATTY	1 cut(s)	28
AfiI	CCNNNNNNNGG	4 cut(s)	24, 105, 389, 709
AflII	CTTAAG	1 cut(s)	443
AgsI	TTSAA	3 cut(s)	139, 356, 791
AjnI	CCWGG	2 cut(s)	147, 388
AjuI	GAANNNNNNNTTGG	2 cut(s)	88, 120
AluBI	AGCT	6 cut(s)	54, 135, 142, 601, 695, 749
AluI	AGCT	6 cut(s)	54, 135, 142, 601, 695, 749
Alw26I	GTCTC	3 cut(s)	191, 197, 494
AlwI	GGATC	3 cut(s)	385, 485, 498
Aor13HI	TCCGGA	1 cut(s)	414
AoxI	GGCC	1 cut(s)	639
ApeKI	GCWGC	5 cut(s)	51, 60, 132, 295, 746
ApoI	RAATTY	1 cut(s)	28
Asp700I	GAANNNNTTC	1 cut(s)	100
AsuC2I	CCSGG	1 cut(s)	402
AsuHPI	GGTGA	3 cut(s)	416, 599, 695
AxyI	CCTNAGG	1 cut(s)	621
BamHI	GGATCC	1 cut(s)	490
BbvI	GCAGC	5 cut(s)	47, 63, 144, 307, 758
BccI	CCATC	3 cut(s)	257, 291, 419
BceAI	ACGGC	2 cut(s)	263, 626
BciT130I	CCWGG	2 cut(s)	149, 390
BclI	TGATCA	1 cut(s)	628
BcnI	CCSGG	1 cut(s)	402
BcoDI	GTCTC	3 cut(s)	191, 197, 494
BfaI	CTAG	1 cut(s)	611
BfrI	CTTAAG	1 cut(s)	443
BfuAI	ACCTGC	1 cut(s)	534
BisI	GCNGC	5 cut(s)	52, 61, 133, 296, 747
BlsI	GCNGC	5 cut(s)	53, 62, 134, 297, 748
Bme1390I	CCNGG	3 cut(s)	149, 390, 402
BmiI	GGNNCC	2 cut(s)	97, 492
BmrFI	CCNGG	3 cut(s)	149, 390, 402
BmsI	GCATC	2 cut(s)	265, 316
BpmI	CTGGAG	1 cut(s)	525
BpuMI	CCSGG	1 cut(s)	402
Bsa29I	ATCGAT	1 cut(s)	435
BsaI	GGTCTC	1 cut(s)	197
BsaJI	CCNNGG	1 cut(s)	718
BsaWI	WCCGGW	2 cut(s)	217, 414
Bsc4I	CCNNNNNNNGG	4 cut(s)	24, 105, 389, 709
Bse1I	ACTGG	4 cut(s)	372, 508, 635, 685
Bse21I	CCTNAGG	1 cut(s)	621
BseAI	TCCGGA	1 cut(s)	414
BseBI	CCWGG	2 cut(s)	149, 390
BseCI	ATCGAT	1 cut(s)	435
BseDI	CCNNGG	1 cut(s)	718
BseGI	GGATG	3 cut(s)	268, 411, 631
BseLI	CCNNNNNNNGG	4 cut(s)	24, 105, 389, 709
BseMII	CTCAG	2 cut(s)	327, 612
BseNI	ACTGG	4 cut(s)	372, 508, 635, 685
BseRI	GAGGAG	1 cut(s)	546
BseXI	GCAGC	5 cut(s)	47, 63, 144, 307, 758
BsgI	GTGCAG	1 cut(s)	70
BshFI	GGCC	1 cut(s)	641
BshVI	ATCGAT	1 cut(s)	435
BsiSI	CCGG	3 cut(s)	218, 401, 415
BslFI	GGGAC	2 cut(s)	20, 716
BslI	CCNNNNNNNGG	4 cut(s)	24, 105, 389, 709
BsmAI	GTCTC	3 cut(s)	191, 197, 494
BsmBI	CGTCTC	1 cut(s)	191
BsmFI	GGGAC	2 cut(s)	20, 716
BsmI	GAATGC	1 cut(s)	576
BsnI	GGCC	1 cut(s)	641
Bso31I	GGTCTC	1 cut(s)	197
Bsp13I	TCCGGA	1 cut(s)	414
Bsp143I	GATC	4 cut(s)	64, 377, 490, 628
BspACI	CCGC	3 cut(s)	12, 172, 212
BspANI	GGCC	1 cut(s)	641
BspCNI	CTCAG	2 cut(s)	328, 613
BspDI	ATCGAT	1 cut(s)	435
BspEI	TCCGGA	1 cut(s)	414
BspLI	GGNNCC	2 cut(s)	97, 492
BspMI	ACCTGC	1 cut(s)	534
BspPI	GGATC	3 cut(s)	385, 485, 498
BspTI	CTTAAG	1 cut(s)	443
BspTNI	GGTCTC	1 cut(s)	197
BsrI	ACTGG	4 cut(s)	372, 508, 635, 685
BssECI	CCNNGG	1 cut(s)	718
BssMI	GATC	4 cut(s)	64, 377, 490, 628
Bst2UI	CCWGG	2 cut(s)	149, 390
Bst4CI	ACNGT	1 cut(s)	822
Bst6I	CTCTTC	2 cut(s)	106, 390
BstAFI	CTTAAG	1 cut(s)	443
BstAPI	GCANNNNNTGC	2 cut(s)	57, 752
BstC8I	GCNNGC	1 cut(s)	540
BstDEI	CTNAG	3 cut(s)	336, 621, 857
BstDSI	CCRYGG	1 cut(s)	718
BstENI	CCTNNNNNAGG	2 cut(s)	387, 707
BstF5I	GGATG	3 cut(s)	268, 411, 631
BstKTI	GATC	4 cut(s)	67, 380, 493, 631
BstMAI	GTCTC	3 cut(s)	191, 197, 494
BstMBI	GATC	4 cut(s)	64, 377, 490, 628
BstMWI	GCNNNNNNNGC	4 cut(s)	57, 60, 535, 752
BstNI	CCWGG	2 cut(s)	149, 390
BstSCI	CCNGG	3 cut(s)	147, 388, 400
BstV1I	GCAGC	5 cut(s)	47, 63, 144, 307, 758
BstX2I	RGATCY	1 cut(s)	490
BstYI	RGATCY	1 cut(s)	490
Bsu15I	ATCGAT	1 cut(s)	435
Bsu36I	CCTNAGG	1 cut(s)	621
BsuRI	GGCC	1 cut(s)	641
BsuTUI	ATCGAT	1 cut(s)	435
BtgI	CCRYGG	1 cut(s)	718
BtsCI	GGATG	3 cut(s)	268, 411, 631
BtsI	GCAGTG	1 cut(s)	53
BtsIMutI	CAGTG	3 cut(s)	53, 379, 642
BveI	ACCTGC	1 cut(s)	534
Cac8I	GCNNGC	1 cut(s)	540
ClaI	ATCGAT	1 cut(s)	435
CsiI	ACCWGGT	1 cut(s)	147
CviAII	CATG	1 cut(s)	251
DdeI	CTNAG	3 cut(s)	336, 621, 857
DpnI	GATC	4 cut(s)	66, 379, 492, 630
DpnII	GATC	4 cut(s)	64, 377, 490, 628
DraI	TTTAAA	1 cut(s)	517
EaeI	YGGCCR	1 cut(s)	639
Eam1104I	CTCTTC	2 cut(s)	106, 390
EarI	CTCTTC	2 cut(s)	106, 390
Eco31I	GGTCTC	1 cut(s)	197
Eco32I	GATATC	1 cut(s)	561
Eco81I	CCTNAGG	1 cut(s)	621
EcoNI	CCTNNNNNAGG	2 cut(s)	387, 707
EcoRII	CCWGG	2 cut(s)	147, 388
EcoRV	GATATC	1 cut(s)	561
Esp3I	CGTCTC	1 cut(s)	191
FaeI	CATG	1 cut(s)	254
FaiI	YATR	7 cut(s)	252, 496, 498, 552, 597, 825, 851
FaqI	GGGAC	2 cut(s)	20, 716
FatI	CATG	1 cut(s)	250
FauI	CCCGC	1 cut(s)	165
FauNDI	CATATG	1 cut(s)	496
FbaI	TGATCA	1 cut(s)	628
Fnu4HI	GCNGC	5 cut(s)	52, 61, 133, 296, 747
FokI	GGATG	3 cut(s)	275, 398, 638
Fsp4HI	GCNGC	5 cut(s)	52, 61, 133, 296, 747
FspBI	CTAG	1 cut(s)	611
GluI	GCNGC	5 cut(s)	52, 61, 133, 296, 747
GsuI	CTGGAG	1 cut(s)	525
HaeIII	GGCC	1 cut(s)	641
HapII	CCGG	3 cut(s)	218, 401, 415
Hin1II	CATG	1 cut(s)	254
HincII	GTYRAC	1 cut(s)	678
HindII	GTYRAC	1 cut(s)	678
HindIII	AAGCTT	1 cut(s)	599
HinfI	GANTC	5 cut(s)	269, 407, 418, 674, 686
HpaII	CCGG	3 cut(s)	218, 401, 415
HphI	GGTGA	3 cut(s)	416, 599, 695
Hpy166II	GTNNAC	3 cut(s)	319, 678, 777
Hpy188I	TCNGA	1 cut(s)	274
Hpy188III	TCNNGA	7 cut(s)	93, 156, 415, 478, 488, 620, 800
Hpy8I	GTNNAC	3 cut(s)	319, 678, 777
Hpy99I	CGWCG	1 cut(s)	126
HpyAV	CCTTC	2 cut(s)	617, 651
HpyCH4III	ACNGT	1 cut(s)	822
HpyCH4IV	ACGT	1 cut(s)	770
HpyCH4V	TGCA	6 cut(s)	51, 308, 574, 746, 808, 827
HpyF10VI	GCNNNNNNNGC	4 cut(s)	57, 60, 535, 752
HpyF3I	CTNAG	3 cut(s)	336, 621, 857
HpySE526I	ACGT	1 cut(s)	770
Hsp92II	CATG	1 cut(s)	254
Kpn2I	TCCGGA	1 cut(s)	414
Ksp22I	TGATCA	1 cut(s)	628
Kzo9I	GATC	4 cut(s)	64, 377, 490, 628
LmnI	GCTCC	2 cut(s)	147, 700
Lsp1109I	GCAGC	5 cut(s)	47, 63, 144, 307, 758
LweI	GCATC	2 cut(s)	265, 316
MabI	ACCWGGT	1 cut(s)	147
MaeI	CTAG	1 cut(s)	611
MaeII	ACGT	1 cut(s)	770
MaeIII	GTNAC	3 cut(s)	478, 705, 766
MalI	GATC	4 cut(s)	66, 379, 492, 630
MboI	GATC	4 cut(s)	64, 377, 490, 628
MboII	GAAGA	4 cut(s)	59, 93, 377, 779
MflI	RGATCY	1 cut(s)	490
MluCI	AATT	3 cut(s)	28, 803, 814
MlyI	GAGTC	1 cut(s)	683
MnlI	CCTC	9 cut(s)	109, 159, 169, 229, 253, 331, 393, 524, 616
MroI	TCCGGA	1 cut(s)	414
MroXI	GAANNNNTTC	1 cut(s)	100
MseI	TTAA	2 cut(s)	444, 516
MslI	CAYNNNNRTG	1 cut(s)	255
MspA1I	CMGCKG	1 cut(s)	749
MspCI	CTTAAG	1 cut(s)	443
MspI	CCGG	3 cut(s)	218, 401, 415
MspR9I	CCNGG	3 cut(s)	149, 390, 402
Mva1269I	GAATGC	1 cut(s)	576
MvaI	CCWGG	2 cut(s)	149, 390
MwoI	GCNNNNNNNGC	4 cut(s)	57, 60, 535, 752
NciI	CCSGG	1 cut(s)	402
NdeI	CATATG	1 cut(s)	496
NdeII	GATC	4 cut(s)	64, 377, 490, 628
NlaIII	CATG	1 cut(s)	254
NlaIV	GGNNCC	2 cut(s)	97, 492
NmuCI	GTSAC	2 cut(s)	478, 766
PcsI	WCGNNNNNNNCGW	1 cut(s)	121
PctI	GAATGC	1 cut(s)	576
PdmI	GAANNNNTTC	1 cut(s)	100
PfeI	GAWTC	4 cut(s)	269, 407, 418, 686
PkrI	GCNGC	5 cut(s)	53, 62, 134, 297, 748
PleI	GAGTC	1 cut(s)	682
PpsI	GAGTC	1 cut(s)	682
Psp6I	CCWGG	2 cut(s)	147, 388
PspGI	CCWGG	2 cut(s)	147, 388
PspN4I	GGNNCC	2 cut(s)	97, 492
PsuI	RGATCY	1 cut(s)	490
PvuII	CAGCTG	1 cut(s)	749
RseI	CAYNNNNRTG	1 cut(s)	255
SaqAI	TTAA	2 cut(s)	444, 516
SatI	GCNGC	5 cut(s)	52, 61, 133, 296, 747
Sau3AI	GATC	4 cut(s)	64, 377, 490, 628
SchI	GAGTC	1 cut(s)	683
ScrFI	CCNGG	3 cut(s)	149, 390, 402
SexAI	ACCWGGT	1 cut(s)	147
SfaNI	GCATC	2 cut(s)	265, 316
SmiMI	CAYNNNNRTG	1 cut(s)	255
SmlI	CTYRAG	1 cut(s)	443
SmoI	CTYRAG	1 cut(s)	443
Sse9I	AATT	3 cut(s)	28, 803, 814
SsiI	CCGC	3 cut(s)	12, 172, 212
SspMI	CTAG	1 cut(s)	611
StyD4I	CCNGG	3 cut(s)	147, 388, 400
TaaI	ACNGT	1 cut(s)	822
TaiI	ACGT	1 cut(s)	773
TaqI	TCGA	2 cut(s)	155, 435
TaqII	GACCGA	1 cut(s)	221
TasI	AATT	3 cut(s)	28, 803, 814
TfiI	GAWTC	4 cut(s)	269, 407, 418, 686
Tru1I	TTAA	2 cut(s)	444, 516
Tru9I	TTAA	2 cut(s)	444, 516
TscAI	CASTG	3 cut(s)	53, 379, 642
TseFI	GTSAC	2 cut(s)	478, 766
TseI	GCWGC	5 cut(s)	51, 60, 132, 295, 746
Tsp45I	GTSAC	2 cut(s)	478, 766
TspDTI	ATGAA	5 cut(s)	17, 267, 567, 606, 838
TspGWI	ACGGA	3 cut(s)	215, 707, 718
TspRI	CASTG	3 cut(s)	53, 379, 642
Vha464I	CTTAAG	1 cut(s)	443
XagI	CCTNNNNNAGG	2 cut(s)	387, 707
XapI	RAATTY	1 cut(s)	28
XmnI	GAANNNNTTC	1 cut(s)	100
XspI	CTAG	1 cut(s)	611

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.