FvH4_7g24870

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0016394
Physical Location & Seq
Forward (+)
19107990 .. 19110842
2853 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g24870.t1

Sequence Viewer

Length: 612 bp
ATGGGGGATTTCAATTTAGAATTGCTCCAAAAGTTCAGGAAATTCAAGACAGAAAAATTTTCGGAGCAGGATCGGATTAGAGAGGATCAGGAGAATAAGTTTAAGAACTATATTTCAGTGTCTGAAGAGGTCAGCGAGTACTTGCATTCCTCAATTTGGGAGTTGAAAACGCAAGTCAAGGACTTGAAAAAAGAACTGGTTTCTCTTAGGCATGCAATTCTGTTCTGGGCCACGAAAGATGACCAGTCTAAGGTTTACCAGAAGCGGTTACTGGAAGAGGAGCAGAAGGTGGAGGTGTTAAAGCTGCGTTTGAAAATCGAAAAGGAGAGGACCCGATCACAGGCTAATGAAATAGATTCTCTTAGGGCTGCAAAGGATGAGGAAATCATGGAATGCCGGAAGCTTTTGATGGAAGAGAAGCAGAAGAACAAAGAACTTTCTGATGAAAACGAGAGACTCAAACAGCTGCAAGAGAAGCTAATTTCTAGCAGATTGAAGAATACAAAAGATGCACAACTGTGTATTACTACTACTGGTGGTCATGTCTCACGAGAAACAACCAAACACACAAAGAGATCAGGGGGCAGAAAGATAAATATCCCTCGAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

204

Amino Acids

24.15

Weight (kDa)

9.33

Isoelectric Point (pI)

53.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016394)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g24870 FvH4_7g24870 FvH4_7g24870 FvH4_7g24870
rosa_chinensis RchiOBHm_Chr1g0370751
rosa_laevigata RLG00000027013
rosa_multiflora Rmu_sc0004550.1_g000018
rosa_roxburghii Rroxscaffold_4G00286270
rosa_rugosa Rorug01G0359300 Rorug07G0063000
rosa_samantha Rh1AG368500 Rh1BG332100 Rh1CG346000 Rh1DG363500
rosa_wichuraiana Rw1G032440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 265
AclWI GGATC 2 cut(s) 78, 93
AcsI RAATTY 2 cut(s) 41, 56
AcuI CTGAAG 1 cut(s) 144
AfaI GTAC 1 cut(s) 140
AfiI CCNNNNNNNGG 3 cut(s) 156, 250, 340
AgsI TTSAA 6 cut(s) 13, 46, 166, 187, 313, 496
AleI CACNNNNGTG 1 cut(s) 517
AluBI AGCT 5 cut(s) 304, 403, 466, 478, 608
AluI AGCT 5 cut(s) 304, 403, 466, 478, 608
Alw26I GTCTC 2 cut(s) 448, 550
AlwI GGATC 2 cut(s) 78, 93
AlwNI CAGNNNCTG 1 cut(s) 122
Ama87I CYCGRG 1 cut(s) 603
AoxI GGCC 1 cut(s) 228
ApeKI GCWGC 3 cut(s) 304, 368, 466
ApoI RAATTY 2 cut(s) 41, 56
AspS9I GGNCC 2 cut(s) 228, 330
AvaI CYCGRG 1 cut(s) 603
AvaII GGWCC 1 cut(s) 330
BauI CACGAG 1 cut(s) 549
BbvI GCAGC 3 cut(s) 291, 355, 453
BccI CCATC 1 cut(s) 403
BcoDI GTCTC 2 cut(s) 448, 550
BfaI CTAG 1 cut(s) 486
BisI GCNGC 3 cut(s) 305, 369, 467
BlsI GCNGC 3 cut(s) 306, 370, 468
BmcAI AGTACT 1 cut(s) 140
Bme18I GGWCC 1 cut(s) 330
BmeT110I CYCGRG 1 cut(s) 603
BmgT120I GGNCC 2 cut(s) 228, 330
BmiI GGNNCC 1 cut(s) 332
BmsI GCATC 1 cut(s) 499
BsaBI GATNNNNATC 1 cut(s) 596
BsaXI ACNNNNNCTCC 2 cut(s) 83, 113
Bsc4I CCNNNNNNNGG 3 cut(s) 156, 250, 340
Bse1I ACTGG 4 cut(s) 201, 244, 276, 538
Bse8I GATNNNNATC 1 cut(s) 596
BseGI GGATG 1 cut(s) 382
BseJI GATNNNNATC 1 cut(s) 596
BseLI CCNNNNNNNGG 3 cut(s) 156, 250, 340
BseNI ACTGG 4 cut(s) 201, 244, 276, 538
BseRI GAGGAG 1 cut(s) 293
BseXI GCAGC 3 cut(s) 291, 355, 453
BshFI GGCC 1 cut(s) 230
BsiHKCI CYCGRG 1 cut(s) 603
BsiSI CCGG 1 cut(s) 397
BslI CCNNNNNNNGG 3 cut(s) 156, 250, 340
BsmAI GTCTC 2 cut(s) 448, 550
BsmI GAATGC 2 cut(s) 145, 398
BsnI GGCC 1 cut(s) 230
BsoBI CYCGRG 1 cut(s) 603
Bsp143I GATC 4 cut(s) 70, 85, 335, 575
BspACI CCGC 1 cut(s) 265
BspANI GGCC 1 cut(s) 230
BspLI GGNNCC 1 cut(s) 332
BspPI GGATC 2 cut(s) 78, 93
BsrI ACTGG 4 cut(s) 201, 244, 276, 538
BssMI GATC 4 cut(s) 70, 85, 335, 575
BssSI CACGAG 1 cut(s) 549
Bst2BI CACGAG 1 cut(s) 549
Bst4CI ACNGT 1 cut(s) 519
Bst6I CTCTTC 3 cut(s) 120, 270, 408
BstC8I GCNNGC 1 cut(s) 213
BstDEI CTNAG 3 cut(s) 206, 249, 362
BstF5I GGATG 1 cut(s) 382
BstKTI GATC 4 cut(s) 73, 88, 338, 578
BstMAI GTCTC 2 cut(s) 448, 550
BstMBI GATC 4 cut(s) 70, 85, 335, 575
BstMWI GCNNNNNNNGC 1 cut(s) 475
BstNSI RCATGY 1 cut(s) 215
BstV1I GCAGC 3 cut(s) 291, 355, 453
BsuRI GGCC 1 cut(s) 230
BtsCI GGATG 1 cut(s) 382
BtsIMutI CAGTG 1 cut(s) 123
Cac8I GCNNGC 1 cut(s) 213
CaiI CAGNNNCTG 1 cut(s) 122
Cfr13I GGNCC 2 cut(s) 228, 330
Csp6I GTAC 1 cut(s) 139
CviAII CATG 3 cut(s) 212, 388, 542
CviJI RGCY 8 cut(s) 230, 304, 344, 368, 403, 466, 478, 608
CviKI_1 RGCY 8 cut(s) 230, 304, 344, 368, 403, 466, 478, 608
CviQI GTAC 1 cut(s) 139
DdeI CTNAG 3 cut(s) 206, 249, 362
DpnI GATC 4 cut(s) 72, 87, 337, 577
DpnII GATC 4 cut(s) 70, 85, 335, 575
Eam1104I CTCTTC 3 cut(s) 120, 270, 408
EarI CTCTTC 3 cut(s) 120, 270, 408
Eco47I GGWCC 1 cut(s) 330
Eco57I CTGAAG 1 cut(s) 144
Eco88I CYCGRG 1 cut(s) 603
EcoO109I RGGNCCY 1 cut(s) 330
FaeI CATG 3 cut(s) 215, 391, 545
FaiI YATR 4 cut(s) 111, 213, 389, 543
FatI CATG 3 cut(s) 211, 387, 541
Fnu4HI GCNGC 3 cut(s) 305, 369, 467
FokI GGATG 1 cut(s) 389
Fsp4HI GCNGC 3 cut(s) 305, 369, 467
FspBI CTAG 1 cut(s) 486
GluI GCNGC 3 cut(s) 305, 369, 467
HaeIII GGCC 1 cut(s) 230
HapII CCGG 1 cut(s) 397
Hin1II CATG 3 cut(s) 215, 391, 545
HindIII AAGCTT 1 cut(s) 401
HinfI GANTC 2 cut(s) 356, 456
HpaII CCGG 1 cut(s) 397
Hpy166II GTNNAC 1 cut(s) 256
Hpy188I TCNGA 4 cut(s) 64, 75, 124, 442
Hpy188III TCNNGA 4 cut(s) 37, 46, 89, 549
Hpy8I GTNNAC 1 cut(s) 256
HpyAV CCTTC 1 cut(s) 280
HpyCH4III ACNGT 1 cut(s) 519
HpyCH4V TGCA 5 cut(s) 145, 215, 371, 469, 512
HpyF10VI GCNNNNNNNGC 1 cut(s) 475
HpyF3I CTNAG 3 cut(s) 206, 249, 362
Hsp92II CATG 3 cut(s) 215, 391, 545
Kzo9I GATC 4 cut(s) 70, 85, 335, 575
LmnI GCTCC 3 cut(s) 30, 64, 280
Lsp1109I GCAGC 3 cut(s) 291, 355, 453
LweI GCATC 1 cut(s) 499
MaeI CTAG 1 cut(s) 486
MaeIII GTNAC 1 cut(s) 267
MalI GATC 4 cut(s) 72, 87, 337, 577
MboI GATC 4 cut(s) 70, 85, 335, 575
MboII GAAGA 5 cut(s) 137, 287, 425, 436, 508
MluCI AATT 7 cut(s) 13, 20, 41, 56, 153, 216, 480
MlyI GAGTC 1 cut(s) 450
MnlI CCTC 8 cut(s) 76, 121, 160, 271, 286, 321, 373, 612
MseI TTAA 2 cut(s) 102, 299
MslI CAYNNNNRTG 1 cut(s) 517
MspA1I CMGCKG 1 cut(s) 466
MspI CCGG 1 cut(s) 397
Mva1269I GAATGC 2 cut(s) 145, 398
MwoI GCNNNNNNNGC 1 cut(s) 475
NdeII GATC 4 cut(s) 70, 85, 335, 575
NlaIII CATG 3 cut(s) 215, 391, 545
NlaIV GGNNCC 1 cut(s) 332
NspI RCATGY 1 cut(s) 215
OliI CACNNNNGTG 1 cut(s) 517
PaeI GCATGC 1 cut(s) 215
PaeR7I CTCGAG 1 cut(s) 603
PctI GAATGC 2 cut(s) 145, 398
PfeI GAWTC 1 cut(s) 356
PkrI GCNGC 3 cut(s) 306, 370, 468
PleI GAGTC 1 cut(s) 450
PpsI GAGTC 1 cut(s) 450
PpuMI RGGWCCY 1 cut(s) 330
Psp5II RGGWCCY 1 cut(s) 330
PspN4I GGNNCC 1 cut(s) 332
PspPI GGNCC 2 cut(s) 228, 330
PspPPI RGGWCCY 1 cut(s) 330
PspXI VCTCGAGB 1 cut(s) 603
PstNI CAGNNNCTG 1 cut(s) 122
PvuII CAGCTG 1 cut(s) 466
RsaI GTAC 1 cut(s) 140
RsaNI GTAC 1 cut(s) 139
RseI CAYNNNNRTG 1 cut(s) 517
SaqAI TTAA 2 cut(s) 102, 299
SatI GCNGC 3 cut(s) 305, 369, 467
Sau3AI GATC 4 cut(s) 70, 85, 335, 575
Sau96I GGNCC 2 cut(s) 228, 330
ScaI AGTACT 1 cut(s) 140
SchI GAGTC 1 cut(s) 450
SetI ASST 9 cut(s) 132, 255, 291, 297, 306, 405, 468, 480, 610
SfaNI GCATC 1 cut(s) 499
Sfr274I CTCGAG 1 cut(s) 603
SinI GGWCC 1 cut(s) 330
SlaI CTCGAG 1 cut(s) 603
SmiMI CAYNNNNRTG 1 cut(s) 517
SmlI CTYRAG 1 cut(s) 603
SmoI CTYRAG 1 cut(s) 603
SphI GCATGC 1 cut(s) 215
Sse9I AATT 7 cut(s) 13, 20, 41, 56, 153, 216, 480
SsiI CCGC 1 cut(s) 265
SspMI CTAG 1 cut(s) 486
TaaI ACNGT 1 cut(s) 519
TaqI TCGA 2 cut(s) 318, 604
TasI AATT 7 cut(s) 13, 20, 41, 56, 153, 216, 480
TatI WGTACW 1 cut(s) 138
TfiI GAWTC 1 cut(s) 356
Tru1I TTAA 2 cut(s) 102, 299
Tru9I TTAA 2 cut(s) 102, 299
TscAI CASTG 1 cut(s) 123
TseI GCWGC 3 cut(s) 304, 368, 466
TspDTI ATGAA 2 cut(s) 363, 459
TspRI CASTG 1 cut(s) 123
VpaK11BI GGWCC 1 cut(s) 330
XapI RAATTY 2 cut(s) 41, 56
XceI RCATGY 1 cut(s) 215
XhoI CTCGAG 1 cut(s) 603
XspI CTAG 1 cut(s) 486
ZrmI AGTACT 1 cut(s) 140
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.