Rh1CG346000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0016394
Physical Location & Seq
Forward (+)
62339760 .. 62342201
2442 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG346000.1

Sequence Viewer

Length: 486 bp
ATGGAGGATTTCAATTTAGAATTGCTCCAAAAGTTCAGGAAATTCAAGACAGAAAAATTCTCAGAGCAGGATCGAATTAATGAAGATCAGGAAAATAAGTTTAAGAACTATATCTCTGTGTCAGAAGAGCTCAGCCAGTACTTGCATTCCTCGATTTGGGAGTTGAAAACACAAGTCAAGGACTTAAGAAAAGAACTGGTTTCTCTTAGGGCCACGAAAGATGACCAATCTACGGAATACCAGAAGCACTTAATGGAAGAGGAGCAGAAGGTGGAGGTGTTAAAGCTGCGTTTGAAAATCGAAAAGGAGAGGAACAGATCACAGGCGAATGAAATGGCTTCTCTTAGGGCTGCAAAGGATGAGGAAATCATGGAATACCGGAAGCTTTTGATGGAAGAGAAGCAGAAGAGACGAGTTTCAGGGGAGTTATTCACATATGAGTTTTATGGAGTGTTAATCTTGGTGAAACCTGGATGTTCATTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

161

Amino Acids

19.47

Weight (kDa)

6.24

Isoelectric Point (pI)

53.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016394)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g24870 FvH4_7g24870 FvH4_7g24870 FvH4_7g24870
rosa_chinensis RchiOBHm_Chr1g0370751
rosa_laevigata RLG00000027013
rosa_multiflora Rmu_sc0004550.1_g000018
rosa_roxburghii Rroxscaffold_4G00286270
rosa_rugosa Rorug01G0359300 Rorug07G0063000
rosa_samantha Rh1AG368500 Rh1BG332100 Rh1CG346000 Rh1DG363500
rosa_wichuraiana Rw1G032440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 78
AcsI RAATTY 2 cut(s) 41, 56
AfaI GTAC 1 cut(s) 140
AfiI CCNNNNNNNGG 2 cut(s) 156, 232
AflII CTTAAG 1 cut(s) 184
AgsI TTSAA 4 cut(s) 13, 46, 166, 295
AjnI CCWGG 1 cut(s) 469
AluBI AGCT 3 cut(s) 130, 286, 385
AluI AGCT 3 cut(s) 130, 286, 385
Alw21I GWGCWC 1 cut(s) 132
Alw26I GTCTC 1 cut(s) 403
AlwI GGATC 1 cut(s) 78
AoxI GGCC 1 cut(s) 210
ApeKI GCWGC 2 cut(s) 286, 350
ApoI RAATTY 2 cut(s) 41, 56
AseI ATTAAT 1 cut(s) 78
AspS9I GGNCC 1 cut(s) 210
AsuHPI GGTGA 1 cut(s) 475
BanII GRGCYC 1 cut(s) 132
Bbv12I GWGCWC 1 cut(s) 132
BbvI GCAGC 2 cut(s) 273, 337
BccI CCATC 1 cut(s) 385
BciT130I CCWGG 1 cut(s) 471
BcoDI GTCTC 1 cut(s) 403
BfrI CTTAAG 1 cut(s) 184
BisI GCNGC 2 cut(s) 287, 351
BlpI GCTNAGC 1 cut(s) 131
BlsI GCNGC 2 cut(s) 288, 352
BmcAI AGTACT 1 cut(s) 140
Bme1390I CCNGG 1 cut(s) 471
BmgT120I GGNCC 1 cut(s) 210
BmrFI CCNGG 1 cut(s) 471
Bpu1102I GCTNAGC 1 cut(s) 131
BsaWI WCCGGW 1 cut(s) 378
Bsc4I CCNNNNNNNGG 2 cut(s) 156, 232
Bse1I ACTGG 2 cut(s) 136, 201
BseBI CCWGG 1 cut(s) 471
BseGI GGATG 2 cut(s) 364, 479
BseLI CCNNNNNNNGG 2 cut(s) 156, 232
BseMII CTCAG 2 cut(s) 75, 145
BseNI ACTGG 2 cut(s) 136, 201
BseRI GAGGAG 1 cut(s) 275
BseXI GCAGC 2 cut(s) 273, 337
BshFI GGCC 1 cut(s) 212
BsiHKAI GWGCWC 1 cut(s) 132
BsiSI CCGG 1 cut(s) 379
BslI CCNNNNNNNGG 2 cut(s) 156, 232
BsmAI GTCTC 1 cut(s) 403
BsmBI CGTCTC 1 cut(s) 403
BsmI GAATGC 1 cut(s) 145
BsnI GGCC 1 cut(s) 212
Bsp1286I GDGCHC 1 cut(s) 132
Bsp143I GATC 3 cut(s) 70, 85, 317
Bsp1720I GCTNAGC 1 cut(s) 131
BspANI GGCC 1 cut(s) 212
BspCNI CTCAG 2 cut(s) 74, 144
BspPI GGATC 1 cut(s) 78
BspQI GCTCTTC 1 cut(s) 120
BspTI CTTAAG 1 cut(s) 184
BsrI ACTGG 2 cut(s) 136, 201
BssMI GATC 3 cut(s) 70, 85, 317
Bst2UI CCWGG 1 cut(s) 471
Bst6I CTCTTC 4 cut(s) 120, 252, 390, 401
BstAFI CTTAAG 1 cut(s) 184
BstDEI CTNAG 4 cut(s) 61, 131, 206, 344
BstF5I GGATG 2 cut(s) 364, 479
BstKTI GATC 3 cut(s) 73, 88, 320
BstMAI GTCTC 1 cut(s) 403
BstMBI GATC 3 cut(s) 70, 85, 317
BstNI CCWGG 1 cut(s) 471
BstSCI CCNGG 1 cut(s) 469
BstV1I GCAGC 2 cut(s) 273, 337
BsuRI GGCC 1 cut(s) 212
BtsCI GGATG 2 cut(s) 364, 479
Cfr13I GGNCC 1 cut(s) 210
Csp6I GTAC 1 cut(s) 139
CviAII CATG 1 cut(s) 370
CviJI RGCY 7 cut(s) 130, 135, 212, 286, 338, 350, 385
CviKI_1 RGCY 7 cut(s) 130, 135, 212, 286, 338, 350, 385
CviQI GTAC 1 cut(s) 139
DdeI CTNAG 4 cut(s) 61, 131, 206, 344
DpnI GATC 3 cut(s) 72, 87, 319
DpnII GATC 3 cut(s) 70, 85, 317
Eam1104I CTCTTC 4 cut(s) 120, 252, 390, 401
EarI CTCTTC 4 cut(s) 120, 252, 390, 401
Ecl136II GAGCTC 1 cut(s) 130
Eco24I GRGCYC 1 cut(s) 132
Eco53kI GAGCTC 1 cut(s) 130
EcoICRI GAGCTC 1 cut(s) 130
EcoRII CCWGG 1 cut(s) 469
EcoT38I GRGCYC 1 cut(s) 132
Esp3I CGTCTC 1 cut(s) 403
FaeI CATG 1 cut(s) 373
FaiI YATR 5 cut(s) 111, 371, 436, 438, 447
FatI CATG 1 cut(s) 369
FauNDI CATATG 1 cut(s) 436
Fnu4HI GCNGC 2 cut(s) 287, 351
FokI GGATG 1 cut(s) 371
FriOI GRGCYC 1 cut(s) 132
Fsp4HI GCNGC 2 cut(s) 287, 351
GluI GCNGC 2 cut(s) 287, 351
HaeIII GGCC 1 cut(s) 212
HapII CCGG 1 cut(s) 379
Hin1II CATG 1 cut(s) 373
HindIII AAGCTT 1 cut(s) 383
HpaII CCGG 1 cut(s) 379
HphI GGTGA 1 cut(s) 475
Hpy188I TCNGA 3 cut(s) 64, 124, 485
Hpy188III TCNNGA 3 cut(s) 37, 46, 89
HpyAV CCTTC 1 cut(s) 262
HpyCH4V TGCA 2 cut(s) 145, 353
HpyF3I CTNAG 4 cut(s) 61, 131, 206, 344
Hsp92II CATG 1 cut(s) 373
Kzo9I GATC 3 cut(s) 70, 85, 317
LguI GCTCTTC 1 cut(s) 120
LmnI GCTCC 2 cut(s) 30, 262
Lsp1109I GCAGC 2 cut(s) 273, 337
MalI GATC 3 cut(s) 72, 87, 319
MboI GATC 3 cut(s) 70, 85, 317
MboII GAAGA 5 cut(s) 95, 137, 269, 407, 418
MhlI GDGCHC 1 cut(s) 132
MluCI AATT 5 cut(s) 13, 20, 41, 56, 75
MnlI CCTC 5 cut(s) 160, 253, 268, 303, 355
MseI TTAA 6 cut(s) 78, 102, 185, 251, 281, 455
MspCI CTTAAG 1 cut(s) 184
MspI CCGG 1 cut(s) 379
MspR9I CCNGG 1 cut(s) 471
Mva1269I GAATGC 1 cut(s) 145
MvaI CCWGG 1 cut(s) 471
NdeI CATATG 1 cut(s) 436
NdeII GATC 3 cut(s) 70, 85, 317
NlaIII CATG 1 cut(s) 373
PciSI GCTCTTC 1 cut(s) 120
PctI GAATGC 1 cut(s) 145
PkrI GCNGC 2 cut(s) 288, 352
PshBI ATTAAT 1 cut(s) 78
Psp124BI GAGCTC 1 cut(s) 132
Psp6I CCWGG 1 cut(s) 469
PspGI CCWGG 1 cut(s) 469
PspPI GGNCC 1 cut(s) 210
RsaI GTAC 1 cut(s) 140
RsaNI GTAC 1 cut(s) 139
SacI GAGCTC 1 cut(s) 132
SapI GCTCTTC 1 cut(s) 120
SaqAI TTAA 6 cut(s) 78, 102, 185, 251, 281, 455
SatI GCNGC 2 cut(s) 287, 351
Sau3AI GATC 3 cut(s) 70, 85, 317
Sau96I GGNCC 1 cut(s) 210
ScaI AGTACT 1 cut(s) 140
ScrFI CCNGG 1 cut(s) 471
SduI GDGCHC 1 cut(s) 132
SetI ASST 6 cut(s) 132, 273, 279, 288, 387, 472
SmlI CTYRAG 1 cut(s) 184
SmoI CTYRAG 1 cut(s) 184
Sse9I AATT 5 cut(s) 13, 20, 41, 56, 75
SstI GAGCTC 1 cut(s) 132
StyD4I CCNGG 1 cut(s) 469
TaqI TCGA 3 cut(s) 73, 152, 300
TasI AATT 5 cut(s) 13, 20, 41, 56, 75
TatI WGTACW 1 cut(s) 138
Tru1I TTAA 6 cut(s) 78, 102, 185, 251, 281, 455
Tru9I TTAA 6 cut(s) 78, 102, 185, 251, 281, 455
TseI GCWGC 2 cut(s) 286, 350
TspDTI ATGAA 3 cut(s) 96, 345, 468
TspGWI ACGGA 1 cut(s) 248
Vha464I CTTAAG 1 cut(s) 184
VspI ATTAAT 1 cut(s) 78
XapI RAATTY 2 cut(s) 41, 56
ZrmI AGTACT 1 cut(s) 140
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.