Rw1G032440

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0016394
Physical Location & Seq
Forward (+)
60706885 .. 60709289
2405 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G032440.1

Sequence Viewer

Length: 606 bp
ATGGAGGATTTCAATTTAGAATTGCTCCAAAAGTTCAGGAAATTCAAGACAGAAAATTTCTCAGAGCAGGATGGAATTAATGAAGATCAGGAAAATAAGTTTAAGAACTATATCTCTGTGTCAGAAGAGCTCAGCCAGTACTTGCATTCCTCGATTTGGGAGTTGAAAACGCAAGTCAAGGACTTAAGAAAAGAACTGGTTTCTCTTAGGCATGCAATTCTGGCCATGAAAGATGACCAATCTACGGAATACCAGAAGCACTTAATGGAAGAAGAGCAGAAGGTGGAGGTGTTAAAGCTGCGTTTGAAAATCGAAAAGGAGAGGAACAGATCACAGGCGAATGAAATGGCTTCTCTTAGGGCTGCAAAGGATGAGGAAATCATGGAATACCGGAAGCTTTTGATGGAAGAGAAGCAGAAGAACAAAGAACTTTCTGATGAAGTAGAGAGACTTCAACAGCTGCAAGAGGAGCTAATTTCTAGCAGATTGAAGGATACAAAAGATGCACAACTGTGTATTACTACTGCTGGTGGTCATGTCTCACGAGAAACAACCAAACACACAAAGAGGACAGGAGGGAGAAAGATAAATAACCTTCGAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

201

Amino Acids

23.84

Weight (kDa)

6.57

Isoelectric Point (pI)

53.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016394)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g24870 FvH4_7g24870 FvH4_7g24870 FvH4_7g24870
rosa_chinensis RchiOBHm_Chr1g0370751
rosa_laevigata RLG00000027013
rosa_multiflora Rmu_sc0004550.1_g000018
rosa_roxburghii Rroxscaffold_4G00286270
rosa_rugosa Rorug01G0359300 Rorug07G0063000
rosa_samantha Rh1AG368500 Rh1BG332100 Rh1CG346000 Rh1DG363500
rosa_wichuraiana Rw1G032440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 222
AcsI RAATTY 2 cut(s) 41, 55
AfaI GTAC 1 cut(s) 140
AfiI CCNNNNNNNGG 2 cut(s) 156, 244
AflII CTTAAG 1 cut(s) 184
AgsI TTSAA 6 cut(s) 13, 46, 166, 307, 455, 490
AleI CACNNNNGTG 1 cut(s) 511
AluBI AGCT 6 cut(s) 130, 298, 397, 460, 472, 602
AluI AGCT 6 cut(s) 130, 298, 397, 460, 472, 602
Alw21I GWGCWC 1 cut(s) 132
Alw26I GTCTC 2 cut(s) 442, 544
AoxI GGCC 1 cut(s) 222
ApeKI GCWGC 3 cut(s) 298, 362, 460
ApoI RAATTY 2 cut(s) 41, 55
AseI ATTAAT 1 cut(s) 78
BalI TGGCCA 1 cut(s) 224
BanII GRGCYC 1 cut(s) 132
BarI GAAGNNNNNNTAC 2 cut(s) 435, 467
BauI CACGAG 1 cut(s) 543
Bbv12I GWGCWC 1 cut(s) 132
BbvI GCAGC 3 cut(s) 285, 349, 447
BccI CCATC 2 cut(s) 65, 397
BciVI GTATCC 1 cut(s) 487
BcoDI GTCTC 2 cut(s) 442, 544
BfaI CTAG 1 cut(s) 480
BfrI CTTAAG 1 cut(s) 184
BfuI GTATCC 1 cut(s) 487
BisI GCNGC 3 cut(s) 299, 363, 461
BlpI GCTNAGC 1 cut(s) 131
BlsI GCNGC 3 cut(s) 300, 364, 462
BmcAI AGTACT 1 cut(s) 140
BmsI GCATC 1 cut(s) 493
Bpu1102I GCTNAGC 1 cut(s) 131
BsaWI WCCGGW 1 cut(s) 390
Bsc4I CCNNNNNNNGG 2 cut(s) 156, 244
Bse1I ACTGG 2 cut(s) 136, 201
BseGI GGATG 2 cut(s) 76, 376
BseLI CCNNNNNNNGG 2 cut(s) 156, 244
BseMII CTCAG 2 cut(s) 75, 145
BseNI ACTGG 2 cut(s) 136, 201
BseRI GAGGAG 1 cut(s) 482
BseXI GCAGC 3 cut(s) 285, 349, 447
BshFI GGCC 1 cut(s) 224
BsiHKAI GWGCWC 1 cut(s) 132
BsiSI CCGG 1 cut(s) 391
BslI CCNNNNNNNGG 2 cut(s) 156, 244
BsmAI GTCTC 2 cut(s) 442, 544
BsmI GAATGC 1 cut(s) 145
BsnI GGCC 1 cut(s) 224
Bsp1286I GDGCHC 1 cut(s) 132
Bsp143I GATC 2 cut(s) 85, 329
Bsp1720I GCTNAGC 1 cut(s) 131
BspANI GGCC 1 cut(s) 224
BspCNI CTCAG 2 cut(s) 74, 144
BspQI GCTCTTC 2 cut(s) 120, 267
BspTI CTTAAG 1 cut(s) 184
BsrI ACTGG 2 cut(s) 136, 201
BssMI GATC 2 cut(s) 85, 329
BssSI CACGAG 1 cut(s) 543
Bst2BI CACGAG 1 cut(s) 543
Bst4CI ACNGT 1 cut(s) 513
Bst6I CTCTTC 3 cut(s) 120, 267, 402
BstAFI CTTAAG 1 cut(s) 184
BstC8I GCNNGC 1 cut(s) 213
BstDEI CTNAG 4 cut(s) 61, 131, 206, 356
BstF5I GGATG 2 cut(s) 76, 376
BstKTI GATC 2 cut(s) 88, 332
BstMAI GTCTC 2 cut(s) 442, 544
BstMBI GATC 2 cut(s) 85, 329
BstMWI GCNNNNNNNGC 2 cut(s) 221, 469
BstNSI RCATGY 1 cut(s) 215
BstV1I GCAGC 3 cut(s) 285, 349, 447
BsuI GTATCC 1 cut(s) 487
BsuRI GGCC 1 cut(s) 224
BtsCI GGATG 2 cut(s) 76, 376
Cac8I GCNNGC 1 cut(s) 213
Csp6I GTAC 1 cut(s) 139
CviAII CATG 4 cut(s) 212, 226, 382, 536
CviQI GTAC 1 cut(s) 139
DdeI CTNAG 4 cut(s) 61, 131, 206, 356
DpnI GATC 2 cut(s) 87, 331
DpnII GATC 2 cut(s) 85, 329
EaeI YGGCCR 1 cut(s) 222
Eam1104I CTCTTC 3 cut(s) 120, 267, 402
EarI CTCTTC 3 cut(s) 120, 267, 402
Ecl136II GAGCTC 1 cut(s) 130
Eco24I GRGCYC 1 cut(s) 132
Eco53kI GAGCTC 1 cut(s) 130
EcoICRI GAGCTC 1 cut(s) 130
EcoT38I GRGCYC 1 cut(s) 132
FaeI CATG 4 cut(s) 215, 229, 385, 539
FaiI YATR 5 cut(s) 111, 213, 227, 383, 537
FatI CATG 4 cut(s) 211, 225, 381, 535
Fnu4HI GCNGC 3 cut(s) 299, 363, 461
FokI GGATG 2 cut(s) 83, 383
FriOI GRGCYC 1 cut(s) 132
Fsp4HI GCNGC 3 cut(s) 299, 363, 461
FspBI CTAG 1 cut(s) 480
GluI GCNGC 3 cut(s) 299, 363, 461
HaeIII GGCC 1 cut(s) 224
HapII CCGG 1 cut(s) 391
Hin1II CATG 4 cut(s) 215, 229, 385, 539
HindIII AAGCTT 1 cut(s) 395
HpaII CCGG 1 cut(s) 391
Hpy188I TCNGA 3 cut(s) 64, 124, 436
Hpy188III TCNNGA 4 cut(s) 37, 46, 89, 543
HpyAV CCTTC 3 cut(s) 274, 484, 605
HpyCH4III ACNGT 1 cut(s) 513
HpyCH4V TGCA 5 cut(s) 145, 215, 365, 463, 506
HpyF10VI GCNNNNNNNGC 2 cut(s) 221, 469
HpyF3I CTNAG 4 cut(s) 61, 131, 206, 356
Hsp92II CATG 4 cut(s) 215, 229, 385, 539
Kzo9I GATC 2 cut(s) 85, 329
LguI GCTCTTC 2 cut(s) 120, 267
LmnI GCTCC 2 cut(s) 30, 469
Lsp1109I GCAGC 3 cut(s) 285, 349, 447
LweI GCATC 1 cut(s) 493
MaeI CTAG 1 cut(s) 480
MalI GATC 2 cut(s) 87, 331
MboI GATC 2 cut(s) 85, 329
MboII GAAGA 6 cut(s) 95, 137, 281, 284, 419, 430
MhlI GDGCHC 1 cut(s) 132
MlsI TGGCCA 1 cut(s) 224
MluCI AATT 7 cut(s) 13, 20, 41, 55, 75, 216, 474
MluNI TGGCCA 1 cut(s) 224
MnlI CCTC 7 cut(s) 160, 280, 315, 367, 460, 561, 569
Mox20I TGGCCA 1 cut(s) 224
MscI TGGCCA 1 cut(s) 224
MseI TTAA 5 cut(s) 78, 102, 185, 263, 293
MslI CAYNNNNRTG 1 cut(s) 511
Msp20I TGGCCA 1 cut(s) 224
MspA1I CMGCKG 1 cut(s) 460
MspCI CTTAAG 1 cut(s) 184
MspI CCGG 1 cut(s) 391
Mva1269I GAATGC 1 cut(s) 145
MwoI GCNNNNNNNGC 2 cut(s) 221, 469
NdeII GATC 2 cut(s) 85, 329
NlaIII CATG 4 cut(s) 215, 229, 385, 539
NspI RCATGY 1 cut(s) 215
OliI CACNNNNGTG 1 cut(s) 511
PaeI GCATGC 1 cut(s) 215
PciSI GCTCTTC 2 cut(s) 120, 267
PctI GAATGC 1 cut(s) 145
PkrI GCNGC 3 cut(s) 300, 364, 462
PshBI ATTAAT 1 cut(s) 78
Psp124BI GAGCTC 1 cut(s) 132
PvuII CAGCTG 1 cut(s) 460
RsaI GTAC 1 cut(s) 140
RsaNI GTAC 1 cut(s) 139
RseI CAYNNNNRTG 1 cut(s) 511
SacI GAGCTC 1 cut(s) 132
SapI GCTCTTC 2 cut(s) 120, 267
SaqAI TTAA 5 cut(s) 78, 102, 185, 263, 293
SatI GCNGC 3 cut(s) 299, 363, 461
Sau3AI GATC 2 cut(s) 85, 329
ScaI AGTACT 1 cut(s) 140
SduI GDGCHC 1 cut(s) 132
SetI ASST 9 cut(s) 132, 285, 291, 300, 399, 462, 474, 597, 604
SfaNI GCATC 1 cut(s) 493
SmiMI CAYNNNNRTG 1 cut(s) 511
SmlI CTYRAG 1 cut(s) 184
SmoI CTYRAG 1 cut(s) 184
SphI GCATGC 1 cut(s) 215
Sse9I AATT 7 cut(s) 13, 20, 41, 55, 75, 216, 474
SspMI CTAG 1 cut(s) 480
SstI GAGCTC 1 cut(s) 132
TaaI ACNGT 1 cut(s) 513
TaqI TCGA 3 cut(s) 152, 312, 598
TasI AATT 7 cut(s) 13, 20, 41, 55, 75, 216, 474
TatI WGTACW 1 cut(s) 138
Tru1I TTAA 5 cut(s) 78, 102, 185, 263, 293
Tru9I TTAA 5 cut(s) 78, 102, 185, 263, 293
TseI GCWGC 3 cut(s) 298, 362, 460
TspDTI ATGAA 4 cut(s) 96, 242, 357, 453
TspGWI ACGGA 1 cut(s) 260
Vha464I CTTAAG 1 cut(s) 184
VspI ATTAAT 1 cut(s) 78
XapI RAATTY 2 cut(s) 41, 55
XceI RCATGY 1 cut(s) 215
XspI CTAG 1 cut(s) 480
ZrmI AGTACT 1 cut(s) 140
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.