Rorug01G0359300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0016394
Physical Location & Seq
Reverse (-)
47532109 .. 47532525
417 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0359300.1

Sequence Viewer

Length: 228 bp
ATGAGCAAGAAGCGAGAGTTCATCGCTGACGGTGTTTTCTTCGCCGAGCTCAACGAACTTCTGATAAGGGAGCTCACCGAGGACGACTACTCCGGCGCTGAGGTTAGGGTTACGCCGATGCGCACTGAGATCATAATCAGGGCTACTCGAACTCAAAACGTGCTCGGAGAGAAGGGAAGGAGGATTAGGGAGCTGAACTCAGTTGTGCAGAAGAGGTTTGATATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

75

Amino Acids

8.77

Weight (kDa)

8.14

Isoelectric Point (pI)

35.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KH_2 PF07650 16 - 73 1.8e-10 KH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016394)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g24870 FvH4_7g24870 FvH4_7g24870 FvH4_7g24870
rosa_chinensis RchiOBHm_Chr1g0370751
rosa_laevigata RLG00000027013
rosa_multiflora Rmu_sc0004550.1_g000018
rosa_roxburghii Rroxscaffold_4G00286270
rosa_rugosa Rorug01G0359300 Rorug07G0063000
rosa_samantha Rh1AG368500 Rh1BG332100 Rh1CG346000 Rh1DG363500
rosa_wichuraiana Rw1G032440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 122
AluBI AGCT 3 cut(s) 49, 73, 193
AluI AGCT 3 cut(s) 49, 73, 193
Alw21I GWGCWC 3 cut(s) 51, 75, 165
AspLEI GCGC 2 cut(s) 98, 123
AsuHPI GGTGA 1 cut(s) 67
BanII GRGCYC 2 cut(s) 51, 75
Bbv12I GWGCWC 3 cut(s) 51, 75, 165
BbvCI CCTCAGC 1 cut(s) 99
BfoI RGCGCY 1 cut(s) 99
BmsI GCATC 1 cut(s) 108
BplI GAGNNNNNCTC 2 cut(s) 182, 214
Bpu10I CCTNAGC 1 cut(s) 99
BsaBI GATNNNNATC 1 cut(s) 134
BsaJI CCNNGG 1 cut(s) 78
BsaXI ACNNNNNCTCC 2 cut(s) 74, 104
Bse8I GATNNNNATC 1 cut(s) 134
BseDI CCNNGG 1 cut(s) 78
BseJI GATNNNNATC 1 cut(s) 134
BseMII CTCAG 3 cut(s) 90, 117, 213
BsgI GTGCAG 1 cut(s) 227
BsiHKAI GWGCWC 3 cut(s) 51, 75, 165
BsiSI CCGG 1 cut(s) 93
Bsp1286I GDGCHC 3 cut(s) 51, 75, 165
Bsp143I GATC 1 cut(s) 129
BspCNI CTCAG 3 cut(s) 91, 118, 212
BssECI CCNNGG 1 cut(s) 78
BssMI GATC 1 cut(s) 129
Bst4CI ACNGT 1 cut(s) 32
Bst6I CTCTTC 1 cut(s) 206
BstDEI CTNAG 3 cut(s) 99, 126, 199
BstH2I RGCGCY 1 cut(s) 99
BstHHI GCGC 2 cut(s) 98, 123
BstKTI GATC 1 cut(s) 132
BstMBI GATC 1 cut(s) 129
BtgZI GCGATG 1 cut(s) 7
BtsIMutI CAGTG 1 cut(s) 123
CfoI GCGC 2 cut(s) 98, 123
CviJI RGCY 4 cut(s) 49, 73, 143, 193
CviKI_1 RGCY 4 cut(s) 49, 73, 143, 193
DdeI CTNAG 3 cut(s) 99, 126, 199
DpnI GATC 1 cut(s) 131
DpnII GATC 1 cut(s) 129
Eam1104I CTCTTC 1 cut(s) 206
EarI CTCTTC 1 cut(s) 206
Ecl136II GAGCTC 2 cut(s) 49, 73
Eco24I GRGCYC 2 cut(s) 51, 75
Eco53kI GAGCTC 2 cut(s) 49, 73
EcoICRI GAGCTC 2 cut(s) 49, 73
EcoT38I GRGCYC 2 cut(s) 51, 75
FaiI YATR 1 cut(s) 134
FriOI GRGCYC 2 cut(s) 51, 75
FspAI RTGCGCAY 1 cut(s) 122
FspI TGCGCA 1 cut(s) 122
GlaI GCGC 2 cut(s) 97, 122
HaeII RGCGCY 1 cut(s) 99
HapII CCGG 1 cut(s) 93
HhaI GCGC 2 cut(s) 98, 123
Hin6I GCGC 2 cut(s) 96, 121
HinP1I GCGC 2 cut(s) 96, 121
HpaII CCGG 1 cut(s) 93
HphI GGTGA 1 cut(s) 67
Hpy188I TCNGA 2 cut(s) 63, 167
HpyAV CCTTC 2 cut(s) 166, 171
HpyCH4III ACNGT 1 cut(s) 32
HpyCH4IV ACGT 1 cut(s) 159
HpyCH4V TGCA 1 cut(s) 208
HpyF3I CTNAG 3 cut(s) 99, 126, 199
HpySE526I ACGT 1 cut(s) 159
HspAI GCGC 2 cut(s) 96, 121
Kzo9I GATC 1 cut(s) 129
LmnI GCTCC 2 cut(s) 70, 190
LpnPI CCDG 2 cut(s) 106, 124
LweI GCATC 1 cut(s) 108
MaeII ACGT 1 cut(s) 159
MaeIII GTNAC 1 cut(s) 109
MalI GATC 1 cut(s) 131
MboI GATC 1 cut(s) 129
MboII GAAGA 2 cut(s) 31, 223
MhlI GDGCHC 3 cut(s) 51, 75, 165
MnlI CCTC 4 cut(s) 73, 94, 174, 207
MseI TTAA 1 cut(s) 226
MspI CCGG 1 cut(s) 93
NdeII GATC 1 cut(s) 129
NmeAIII GCCGAG 1 cut(s) 70
NsbI TGCGCA 1 cut(s) 122
Psp124BI GAGCTC 2 cut(s) 51, 75
SacI GAGCTC 2 cut(s) 51, 75
SaqAI TTAA 1 cut(s) 226
Sau3AI GATC 1 cut(s) 129
SduI GDGCHC 3 cut(s) 51, 75, 165
SetI ASST 6 cut(s) 51, 75, 105, 162, 195, 218
SfaNI GCATC 1 cut(s) 108
SgeI CNNG 9 cut(s) 19, 26, 58, 91, 105, 151, 159, 172, 176
SstI GAGCTC 2 cut(s) 51, 75
TaaI ACNGT 1 cut(s) 32
TaiI ACGT 1 cut(s) 162
TaqI TCGA 1 cut(s) 148
Tru1I TTAA 1 cut(s) 226
Tru9I TTAA 1 cut(s) 226
TscAI CASTG 1 cut(s) 130
TspDTI ATGAA 1 cut(s) 10
TspRI CASTG 1 cut(s) 130
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.