Rh1BG332100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0016394
Physical Location & Seq
Forward (+)
46839909 .. 46842350
2442 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG332100.1

Sequence Viewer

Length: 555 bp
ATGGAGGATTTCAATTTAGAATTGCTCCAAAAGTTCAGGAAATTCAAGACAGAAAAATTCTCAGAGCAGGATCGAATTAATGAAGATCAGGAAAATAAGTTTAAGAACTATATCTCTGTGTCAGAAGAGCTCAGCCAGTACTTGCATTCCTCGATTTGGGAGTTGAAAACACAAGTCAAGGACTTAAGAAAAGAACTGGTTTCTCTTAGGGCCACGAAAGATGACCAATCTACGGAATACCAGAAGCACTTAATGGAAGAGGAGCAGAAGGTGGAGGTGTTAAAGCTGCGTTTGAAAATCGAAAAGGAGAGGAACAGATCACAGGCGAATGAAATGGCTTCTCTTAGGGCTGCAAAGGATGAGGAAATCATGGAATACCGGAAGCTTTTGATGGAAGAGAAGCAGAAGAGTAAGTCAACACTGATCTGTTTGAGCATTTTTATGGCCAGTAACTGTTATAGTCCATGTGAACGTAACTGGATCCTTCATTTCTTTGCATGTTCTCAGGACGAGTTTCAGGGGAGTTATTCACATATGAGTTTTATGGAGTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

184

Amino Acids

22.17

Weight (kDa)

5.72

Isoelectric Point (pI)

55.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016394)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g24870 FvH4_7g24870 FvH4_7g24870 FvH4_7g24870
rosa_chinensis RchiOBHm_Chr1g0370751
rosa_laevigata RLG00000027013
rosa_multiflora Rmu_sc0004550.1_g000018
rosa_roxburghii Rroxscaffold_4G00286270
rosa_rugosa Rorug01G0359300 Rorug07G0063000
rosa_samantha Rh1AG368500 Rh1BG332100 Rh1CG346000 Rh1DG363500
rosa_wichuraiana Rw1G032440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 78, 475, 488
AcoI YGGCCR 1 cut(s) 444
AcsI RAATTY 2 cut(s) 41, 56
AfaI GTAC 1 cut(s) 140
AfiI CCNNNNNNNGG 2 cut(s) 156, 232
AflII CTTAAG 1 cut(s) 184
AgsI TTSAA 4 cut(s) 13, 46, 166, 295
AluBI AGCT 3 cut(s) 130, 286, 385
AluI AGCT 3 cut(s) 130, 286, 385
Alw21I GWGCWC 1 cut(s) 132
AlwI GGATC 3 cut(s) 78, 475, 488
AlwNI CAGNNNCTG 1 cut(s) 453
AoxI GGCC 2 cut(s) 210, 444
ApeKI GCWGC 2 cut(s) 286, 350
ApoI RAATTY 2 cut(s) 41, 56
AseI ATTAAT 1 cut(s) 78
AspS9I GGNCC 1 cut(s) 210
BalI TGGCCA 1 cut(s) 446
BamHI GGATCC 1 cut(s) 480
BanII GRGCYC 1 cut(s) 132
Bbv12I GWGCWC 1 cut(s) 132
BbvI GCAGC 2 cut(s) 273, 337
BccI CCATC 1 cut(s) 385
BfrI CTTAAG 1 cut(s) 184
BisI GCNGC 2 cut(s) 287, 351
BlpI GCTNAGC 1 cut(s) 131
BlsI GCNGC 2 cut(s) 288, 352
BmcAI AGTACT 1 cut(s) 140
BmgT120I GGNCC 1 cut(s) 210
BmiI GGNNCC 1 cut(s) 482
Bpu1102I GCTNAGC 1 cut(s) 131
BsaWI WCCGGW 1 cut(s) 378
Bsc4I CCNNNNNNNGG 2 cut(s) 156, 232
Bse1I ACTGG 4 cut(s) 136, 201, 447, 482
BseGI GGATG 1 cut(s) 364
BseLI CCNNNNNNNGG 2 cut(s) 156, 232
BseMII CTCAG 3 cut(s) 75, 145, 518
BseNI ACTGG 4 cut(s) 136, 201, 447, 482
BseRI GAGGAG 1 cut(s) 275
BseXI GCAGC 2 cut(s) 273, 337
BshFI GGCC 2 cut(s) 212, 446
BsiHKAI GWGCWC 1 cut(s) 132
BsiSI CCGG 1 cut(s) 379
BslI CCNNNNNNNGG 2 cut(s) 156, 232
BsmI GAATGC 1 cut(s) 145
BsnI GGCC 2 cut(s) 212, 446
Bsp1286I GDGCHC 1 cut(s) 132
Bsp143I GATC 5 cut(s) 70, 85, 317, 423, 480
Bsp1720I GCTNAGC 1 cut(s) 131
BspANI GGCC 2 cut(s) 212, 446
BspCNI CTCAG 3 cut(s) 74, 144, 517
BspLI GGNNCC 1 cut(s) 482
BspPI GGATC 3 cut(s) 78, 475, 488
BspQI GCTCTTC 1 cut(s) 120
BspTI CTTAAG 1 cut(s) 184
BsrI ACTGG 4 cut(s) 136, 201, 447, 482
BssMI GATC 5 cut(s) 70, 85, 317, 423, 480
Bst4CI ACNGT 1 cut(s) 455
Bst6I CTCTTC 4 cut(s) 120, 252, 390, 401
BstAFI CTTAAG 1 cut(s) 184
BstDEI CTNAG 5 cut(s) 61, 131, 206, 344, 504
BstF5I GGATG 1 cut(s) 364
BstKTI GATC 5 cut(s) 73, 88, 320, 426, 483
BstMBI GATC 5 cut(s) 70, 85, 317, 423, 480
BstNSI RCATGY 1 cut(s) 501
BstV1I GCAGC 2 cut(s) 273, 337
BstX2I RGATCY 1 cut(s) 480
BstYI RGATCY 1 cut(s) 480
BsuRI GGCC 2 cut(s) 212, 446
BtsCI GGATG 1 cut(s) 364
BtsIMutI CAGTG 1 cut(s) 419
CaiI CAGNNNCTG 1 cut(s) 453
Cfr13I GGNCC 1 cut(s) 210
Csp6I GTAC 1 cut(s) 139
CviAII CATG 3 cut(s) 370, 465, 498
CviJI RGCY 8 cut(s) 130, 135, 212, 286, 338, 350, 385, 446
CviKI_1 RGCY 8 cut(s) 130, 135, 212, 286, 338, 350, 385, 446
CviQI GTAC 1 cut(s) 139
DdeI CTNAG 5 cut(s) 61, 131, 206, 344, 504
DpnI GATC 5 cut(s) 72, 87, 319, 425, 482
DpnII GATC 5 cut(s) 70, 85, 317, 423, 480
EaeI YGGCCR 1 cut(s) 444
Eam1104I CTCTTC 4 cut(s) 120, 252, 390, 401
EarI CTCTTC 4 cut(s) 120, 252, 390, 401
Ecl136II GAGCTC 1 cut(s) 130
Eco24I GRGCYC 1 cut(s) 132
Eco53kI GAGCTC 1 cut(s) 130
EcoICRI GAGCTC 1 cut(s) 130
EcoT38I GRGCYC 1 cut(s) 132
FaeI CATG 3 cut(s) 373, 468, 501
FaiI YATR 9 cut(s) 111, 371, 443, 459, 466, 499, 534, 536, 545
FatI CATG 3 cut(s) 369, 464, 497
FauNDI CATATG 1 cut(s) 534
Fnu4HI GCNGC 2 cut(s) 287, 351
FokI GGATG 1 cut(s) 371
FriOI GRGCYC 1 cut(s) 132
Fsp4HI GCNGC 2 cut(s) 287, 351
GluI GCNGC 2 cut(s) 287, 351
HaeIII GGCC 2 cut(s) 212, 446
HapII CCGG 1 cut(s) 379
Hin1II CATG 3 cut(s) 373, 468, 501
HincII GTYRAC 1 cut(s) 417
HindII GTYRAC 1 cut(s) 417
HindIII AAGCTT 1 cut(s) 383
HpaII CCGG 1 cut(s) 379
Hpy166II GTNNAC 2 cut(s) 417, 470
Hpy188I TCNGA 2 cut(s) 64, 124
Hpy188III TCNNGA 4 cut(s) 37, 46, 89, 506
Hpy8I GTNNAC 2 cut(s) 417, 470
HpyAV CCTTC 2 cut(s) 262, 494
HpyCH4III ACNGT 1 cut(s) 455
HpyCH4IV ACGT 1 cut(s) 472
HpyCH4V TGCA 3 cut(s) 145, 353, 497
HpyF3I CTNAG 5 cut(s) 61, 131, 206, 344, 504
HpySE526I ACGT 1 cut(s) 472
Hsp92II CATG 3 cut(s) 373, 468, 501
Kzo9I GATC 5 cut(s) 70, 85, 317, 423, 480
LguI GCTCTTC 1 cut(s) 120
LmnI GCTCC 2 cut(s) 30, 262
Lsp1109I GCAGC 2 cut(s) 273, 337
MaeII ACGT 1 cut(s) 472
MaeIII GTNAC 2 cut(s) 449, 473
MalI GATC 5 cut(s) 72, 87, 319, 425, 482
MboI GATC 5 cut(s) 70, 85, 317, 423, 480
MboII GAAGA 5 cut(s) 95, 137, 269, 407, 418
MflI RGATCY 1 cut(s) 480
MhlI GDGCHC 1 cut(s) 132
MlsI TGGCCA 1 cut(s) 446
MluCI AATT 5 cut(s) 13, 20, 41, 56, 75
MluNI TGGCCA 1 cut(s) 446
MnlI CCTC 5 cut(s) 160, 253, 268, 303, 355
Mox20I TGGCCA 1 cut(s) 446
MscI TGGCCA 1 cut(s) 446
MseI TTAA 6 cut(s) 78, 102, 185, 251, 281, 553
MslI CAYNNNNRTG 1 cut(s) 440
Msp20I TGGCCA 1 cut(s) 446
MspCI CTTAAG 1 cut(s) 184
MspI CCGG 1 cut(s) 379
Mva1269I GAATGC 1 cut(s) 145
NdeI CATATG 1 cut(s) 534
NdeII GATC 5 cut(s) 70, 85, 317, 423, 480
NlaIII CATG 3 cut(s) 373, 468, 501
NlaIV GGNNCC 1 cut(s) 482
NspI RCATGY 1 cut(s) 501
PciSI GCTCTTC 1 cut(s) 120
PctI GAATGC 1 cut(s) 145
PkrI GCNGC 2 cut(s) 288, 352
PshBI ATTAAT 1 cut(s) 78
Psp124BI GAGCTC 1 cut(s) 132
PspN4I GGNNCC 1 cut(s) 482
PspPI GGNCC 1 cut(s) 210
PstNI CAGNNNCTG 1 cut(s) 453
PsuI RGATCY 1 cut(s) 480
RsaI GTAC 1 cut(s) 140
RsaNI GTAC 1 cut(s) 139
RseI CAYNNNNRTG 1 cut(s) 440
SacI GAGCTC 1 cut(s) 132
SapI GCTCTTC 1 cut(s) 120
SaqAI TTAA 6 cut(s) 78, 102, 185, 251, 281, 553
SatI GCNGC 2 cut(s) 287, 351
Sau3AI GATC 5 cut(s) 70, 85, 317, 423, 480
Sau96I GGNCC 1 cut(s) 210
ScaI AGTACT 1 cut(s) 140
SduI GDGCHC 1 cut(s) 132
SetI ASST 6 cut(s) 132, 273, 279, 288, 387, 475
SmiMI CAYNNNNRTG 1 cut(s) 440
SmlI CTYRAG 1 cut(s) 184
SmoI CTYRAG 1 cut(s) 184
Sse9I AATT 5 cut(s) 13, 20, 41, 56, 75
SstI GAGCTC 1 cut(s) 132
TaaI ACNGT 1 cut(s) 455
TaiI ACGT 1 cut(s) 475
TaqI TCGA 3 cut(s) 73, 152, 300
TasI AATT 5 cut(s) 13, 20, 41, 56, 75
TatI WGTACW 1 cut(s) 138
Tru1I TTAA 6 cut(s) 78, 102, 185, 251, 281, 553
Tru9I TTAA 6 cut(s) 78, 102, 185, 251, 281, 553
TscAI CASTG 1 cut(s) 426
TseI GCWGC 2 cut(s) 286, 350
TspDTI ATGAA 3 cut(s) 96, 345, 476
TspGWI ACGGA 1 cut(s) 248
TspRI CASTG 1 cut(s) 426
Vha464I CTTAAG 1 cut(s) 184
VspI ATTAAT 1 cut(s) 78
XapI RAATTY 2 cut(s) 41, 56
XceI RCATGY 1 cut(s) 501
ZrmI AGTACT 1 cut(s) 140
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.