RchiOBHm_Chr1g0370751

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Forward (+)
60192565 .. 60194050
1486 bp
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UTR
Exon/CDS
Intron
PRQ59489

Sequence Viewer

Length: 213 bp
ATGGAATACCGGAAGCTTTTGATGGAAGAGAAGCAGAAGAACAAAGAACTTTCTGATGAAGTAGAGAGACTTCAACAGCTGCAAGAGGAGCTAATTTCTAGCAGATTGAAGGATACAAAAGATGCACAACTGTGTATTACTACTGCTGGTGGTCATGTCTCACGAGAAACAACCAAACACACAAAGAGGACGGGGGGGGAGAAAGATAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

70

Amino Acids

8.15

Weight (kDa)

7.87

Isoelectric Point (pI)

45.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0016394)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 2 cut(s) 74, 109
AleI CACNNNNGTG 1 cut(s) 130
AluBI AGCT 3 cut(s) 16, 79, 91
AluI AGCT 3 cut(s) 16, 79, 91
Alw26I GTCTC 2 cut(s) 61, 163
ApeKI GCWGC 1 cut(s) 79
BarI GAAGNNNNNNTAC 2 cut(s) 54, 86
BauI CACGAG 1 cut(s) 162
BbvI GCAGC 1 cut(s) 66
BccI CCATC 1 cut(s) 16
BciVI GTATCC 1 cut(s) 106
BcoDI GTCTC 2 cut(s) 61, 163
BfaI CTAG 1 cut(s) 99
BfuI GTATCC 1 cut(s) 106
BisI GCNGC 1 cut(s) 80
BlsI GCNGC 1 cut(s) 81
BmsI GCATC 1 cut(s) 112
BsaWI WCCGGW 1 cut(s) 9
BseRI GAGGAG 1 cut(s) 101
BseXI GCAGC 1 cut(s) 66
BsiSI CCGG 1 cut(s) 10
BsmAI GTCTC 2 cut(s) 61, 163
BssSI CACGAG 1 cut(s) 162
Bst2BI CACGAG 1 cut(s) 162
Bst4CI ACNGT 1 cut(s) 132
Bst6I CTCTTC 1 cut(s) 21
BstMAI GTCTC 2 cut(s) 61, 163
BstMWI GCNNNNNNNGC 1 cut(s) 88
BstV1I GCAGC 1 cut(s) 66
BsuI GTATCC 1 cut(s) 106
CviAII CATG 1 cut(s) 155
CviJI RGCY 3 cut(s) 16, 79, 91
CviKI_1 RGCY 3 cut(s) 16, 79, 91
Eam1104I CTCTTC 1 cut(s) 21
EarI CTCTTC 1 cut(s) 21
FaeI CATG 1 cut(s) 158
FaiI YATR 1 cut(s) 156
FatI CATG 1 cut(s) 154
Fnu4HI GCNGC 1 cut(s) 80
Fsp4HI GCNGC 1 cut(s) 80
FspBI CTAG 1 cut(s) 99
GluI GCNGC 1 cut(s) 80
HapII CCGG 1 cut(s) 10
Hin1II CATG 1 cut(s) 158
HindIII AAGCTT 1 cut(s) 14
HpaII CCGG 1 cut(s) 10
Hpy188I TCNGA 1 cut(s) 55
Hpy188III TCNNGA 1 cut(s) 162
HpyAV CCTTC 1 cut(s) 103
HpyCH4III ACNGT 1 cut(s) 132
HpyCH4V TGCA 2 cut(s) 82, 125
HpyF10VI GCNNNNNNNGC 1 cut(s) 88
Hsp92II CATG 1 cut(s) 158
LmnI GCTCC 1 cut(s) 88
LpnPI CCDG 2 cut(s) 23, 132
Lsp1109I GCAGC 1 cut(s) 66
LweI GCATC 1 cut(s) 112
MaeI CTAG 1 cut(s) 99
MboII GAAGA 2 cut(s) 38, 49
MluCI AATT 1 cut(s) 93
MnlI CCTC 2 cut(s) 79, 180
MslI CAYNNNNRTG 1 cut(s) 130
MspA1I CMGCKG 1 cut(s) 79
MspI CCGG 1 cut(s) 10
MwoI GCNNNNNNNGC 1 cut(s) 88
NlaIII CATG 1 cut(s) 158
OliI CACNNNNGTG 1 cut(s) 130
PkrI GCNGC 1 cut(s) 81
PvuII CAGCTG 1 cut(s) 79
RseI CAYNNNNRTG 1 cut(s) 130
SatI GCNGC 1 cut(s) 80
SetI ASST 3 cut(s) 18, 81, 93
SfaNI GCATC 1 cut(s) 112
SgeI CNNG 8 cut(s) 22, 95, 111, 159, 167, 174, 176, 204
SmiMI CAYNNNNRTG 1 cut(s) 130
Sse9I AATT 1 cut(s) 93
SspMI CTAG 1 cut(s) 99
TaaI ACNGT 1 cut(s) 132
TasI AATT 1 cut(s) 93
TseI GCWGC 1 cut(s) 79
TspDTI ATGAA 1 cut(s) 72
XspI CTAG 1 cut(s) 99
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.