Rroxscaffold_4G00286270

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0016394
Physical Location & Seq
Reverse (-)
7356902 .. 7359363
2462 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00286270.1

Sequence Viewer

Length: 576 bp
ATGGAGGATTTCAATTTAGAATTGCTCCAAAAGTTCAGGAAATTCAAGACAGAAAAATTCTCAGAGCAGGATCGAATTAATGAAGATCAGGAAAATAAGTTTAAGAACTATATCTCTGTGTCAGAAGAGCTCAGCCAGTACTTGCATTCCTCGATTTGGGAGTTGAAAATGCAAGTCAAGGATTTAAGAAAAGAACTGGTTTCTCTTAGGGCCACGAAAGATGACCAATCTACGGAATACCAGAAGCACTTAATGGAAGAGGAGCAGAAGGTGGAGGTGTTAAAGCTGCGTTTGAAAATCGAAAAGGAGAGGAACCGATCACAGGCAAATGAAATGGCTTCTCTTAGGGCTGCAAAGGATGAGGAAATCATGGAATACCGGAAACTTTTGATGGAAGAGAAGCAGAAGAACAAAGAACTTTCTGATGAAGTAGAGAGACTTCAACAGCTGCAAGAGGAGCTAATTTCTAGCAGATTGAAGGATACAAAAGATGCACAACTGTGTATTACTACTGCTGGTGGTCATGTCTCACGAGAAACAACCAAACACACAAAGAGGACAGGGGGAGAAGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

191

Amino Acids

22.74

Weight (kDa)

5.96

Isoelectric Point (pI)

54.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016394)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g24870 FvH4_7g24870 FvH4_7g24870 FvH4_7g24870
rosa_chinensis RchiOBHm_Chr1g0370751
rosa_laevigata RLG00000027013
rosa_multiflora Rmu_sc0004550.1_g000018
rosa_roxburghii Rroxscaffold_4G00286270
rosa_rugosa Rorug01G0359300 Rorug07G0063000
rosa_samantha Rh1AG368500 Rh1BG332100 Rh1CG346000 Rh1DG363500
rosa_wichuraiana Rw1G032440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 78
AcsI RAATTY 2 cut(s) 41, 56
AfaI GTAC 1 cut(s) 140
AfiI CCNNNNNNNGG 3 cut(s) 156, 232, 322
AgsI TTSAA 6 cut(s) 13, 46, 166, 295, 443, 478
AleI CACNNNNGTG 1 cut(s) 499
AluBI AGCT 4 cut(s) 130, 286, 448, 460
AluI AGCT 4 cut(s) 130, 286, 448, 460
Alw21I GWGCWC 1 cut(s) 132
Alw26I GTCTC 2 cut(s) 430, 532
AlwI GGATC 1 cut(s) 78
AoxI GGCC 1 cut(s) 210
ApeKI GCWGC 3 cut(s) 286, 350, 448
ApoI RAATTY 2 cut(s) 41, 56
AseI ATTAAT 1 cut(s) 78
AspS9I GGNCC 1 cut(s) 210
BanII GRGCYC 1 cut(s) 132
BarI GAAGNNNNNNTAC 2 cut(s) 423, 455
BauI CACGAG 1 cut(s) 531
Bbv12I GWGCWC 1 cut(s) 132
BbvI GCAGC 3 cut(s) 273, 337, 435
BccI CCATC 1 cut(s) 385
BciVI GTATCC 1 cut(s) 475
BcoDI GTCTC 2 cut(s) 430, 532
BfaI CTAG 1 cut(s) 468
BfuI GTATCC 1 cut(s) 475
BisI GCNGC 3 cut(s) 287, 351, 449
BlpI GCTNAGC 1 cut(s) 131
BlsI GCNGC 3 cut(s) 288, 352, 450
BmcAI AGTACT 1 cut(s) 140
BmgT120I GGNCC 1 cut(s) 210
BmiI GGNNCC 1 cut(s) 314
BmsI GCATC 1 cut(s) 481
Bpu1102I GCTNAGC 1 cut(s) 131
BsaWI WCCGGW 1 cut(s) 378
Bsc4I CCNNNNNNNGG 3 cut(s) 156, 232, 322
Bse1I ACTGG 2 cut(s) 136, 201
BseGI GGATG 1 cut(s) 364
BseLI CCNNNNNNNGG 3 cut(s) 156, 232, 322
BseMII CTCAG 2 cut(s) 75, 145
BseNI ACTGG 2 cut(s) 136, 201
BseRI GAGGAG 2 cut(s) 275, 470
BseXI GCAGC 3 cut(s) 273, 337, 435
BshFI GGCC 1 cut(s) 212
BsiHKAI GWGCWC 1 cut(s) 132
BsiSI CCGG 1 cut(s) 379
BslI CCNNNNNNNGG 3 cut(s) 156, 232, 322
BsmAI GTCTC 2 cut(s) 430, 532
BsmI GAATGC 1 cut(s) 145
BsnI GGCC 1 cut(s) 212
Bsp1286I GDGCHC 1 cut(s) 132
Bsp143I GATC 3 cut(s) 70, 85, 317
Bsp1720I GCTNAGC 1 cut(s) 131
BspANI GGCC 1 cut(s) 212
BspCNI CTCAG 2 cut(s) 74, 144
BspLI GGNNCC 1 cut(s) 314
BspPI GGATC 1 cut(s) 78
BspQI GCTCTTC 1 cut(s) 120
BsrI ACTGG 2 cut(s) 136, 201
BssMI GATC 3 cut(s) 70, 85, 317
BssSI CACGAG 1 cut(s) 531
Bst2BI CACGAG 1 cut(s) 531
Bst4CI ACNGT 1 cut(s) 501
Bst6I CTCTTC 3 cut(s) 120, 252, 390
BstDEI CTNAG 4 cut(s) 61, 131, 206, 344
BstF5I GGATG 1 cut(s) 364
BstKTI GATC 3 cut(s) 73, 88, 320
BstMAI GTCTC 2 cut(s) 430, 532
BstMBI GATC 3 cut(s) 70, 85, 317
BstMWI GCNNNNNNNGC 1 cut(s) 457
BstV1I GCAGC 3 cut(s) 273, 337, 435
BsuI GTATCC 1 cut(s) 475
BsuRI GGCC 1 cut(s) 212
BtsCI GGATG 1 cut(s) 364
Cfr13I GGNCC 1 cut(s) 210
Csp6I GTAC 1 cut(s) 139
CviAII CATG 2 cut(s) 370, 524
CviJI RGCY 8 cut(s) 130, 135, 212, 286, 338, 350, 448, 460
CviKI_1 RGCY 8 cut(s) 130, 135, 212, 286, 338, 350, 448, 460
CviQI GTAC 1 cut(s) 139
DdeI CTNAG 4 cut(s) 61, 131, 206, 344
DpnI GATC 3 cut(s) 72, 87, 319
DpnII GATC 3 cut(s) 70, 85, 317
Eam1104I CTCTTC 3 cut(s) 120, 252, 390
EarI CTCTTC 3 cut(s) 120, 252, 390
Ecl136II GAGCTC 1 cut(s) 130
Eco24I GRGCYC 1 cut(s) 132
Eco53kI GAGCTC 1 cut(s) 130
EcoICRI GAGCTC 1 cut(s) 130
EcoT38I GRGCYC 1 cut(s) 132
FaeI CATG 2 cut(s) 373, 527
FaiI YATR 3 cut(s) 111, 371, 525
FatI CATG 2 cut(s) 369, 523
Fnu4HI GCNGC 3 cut(s) 287, 351, 449
FokI GGATG 1 cut(s) 371
FriOI GRGCYC 1 cut(s) 132
Fsp4HI GCNGC 3 cut(s) 287, 351, 449
FspBI CTAG 1 cut(s) 468
GluI GCNGC 3 cut(s) 287, 351, 449
HaeIII GGCC 1 cut(s) 212
HapII CCGG 1 cut(s) 379
Hin1II CATG 2 cut(s) 373, 527
HpaII CCGG 1 cut(s) 379
Hpy188I TCNGA 3 cut(s) 64, 124, 424
Hpy188III TCNNGA 4 cut(s) 37, 46, 89, 531
HpyAV CCTTC 3 cut(s) 262, 472, 563
HpyCH4III ACNGT 1 cut(s) 501
HpyCH4V TGCA 5 cut(s) 145, 172, 353, 451, 494
HpyF10VI GCNNNNNNNGC 1 cut(s) 457
HpyF3I CTNAG 4 cut(s) 61, 131, 206, 344
Hsp92II CATG 2 cut(s) 373, 527
Kzo9I GATC 3 cut(s) 70, 85, 317
LguI GCTCTTC 1 cut(s) 120
LmnI GCTCC 3 cut(s) 30, 262, 457
Lsp1109I GCAGC 3 cut(s) 273, 337, 435
LweI GCATC 1 cut(s) 481
MaeI CTAG 1 cut(s) 468
MalI GATC 3 cut(s) 72, 87, 319
MboI GATC 3 cut(s) 70, 85, 317
MboII GAAGA 5 cut(s) 95, 137, 269, 407, 418
MhlI GDGCHC 1 cut(s) 132
MluCI AATT 6 cut(s) 13, 20, 41, 56, 75, 462
MnlI CCTC 7 cut(s) 160, 253, 268, 303, 355, 448, 549
MseI TTAA 5 cut(s) 78, 102, 185, 251, 281
MslI CAYNNNNRTG 1 cut(s) 499
MspA1I CMGCKG 1 cut(s) 448
MspI CCGG 1 cut(s) 379
Mva1269I GAATGC 1 cut(s) 145
MwoI GCNNNNNNNGC 1 cut(s) 457
NdeII GATC 3 cut(s) 70, 85, 317
NlaIII CATG 2 cut(s) 373, 527
NlaIV GGNNCC 1 cut(s) 314
OliI CACNNNNGTG 1 cut(s) 499
PciSI GCTCTTC 1 cut(s) 120
PctI GAATGC 1 cut(s) 145
PkrI GCNGC 3 cut(s) 288, 352, 450
PshBI ATTAAT 1 cut(s) 78
Psp124BI GAGCTC 1 cut(s) 132
PspN4I GGNNCC 1 cut(s) 314
PspPI GGNCC 1 cut(s) 210
PvuII CAGCTG 1 cut(s) 448
RsaI GTAC 1 cut(s) 140
RsaNI GTAC 1 cut(s) 139
RseI CAYNNNNRTG 1 cut(s) 499
SacI GAGCTC 1 cut(s) 132
SapI GCTCTTC 1 cut(s) 120
SaqAI TTAA 5 cut(s) 78, 102, 185, 251, 281
SatI GCNGC 3 cut(s) 287, 351, 449
Sau3AI GATC 3 cut(s) 70, 85, 317
Sau96I GGNCC 1 cut(s) 210
ScaI AGTACT 1 cut(s) 140
SduI GDGCHC 1 cut(s) 132
SetI ASST 6 cut(s) 132, 273, 279, 288, 450, 462
SfaNI GCATC 1 cut(s) 481
SmiMI CAYNNNNRTG 1 cut(s) 499
Sse9I AATT 6 cut(s) 13, 20, 41, 56, 75, 462
SspMI CTAG 1 cut(s) 468
SstI GAGCTC 1 cut(s) 132
TaaI ACNGT 1 cut(s) 501
TaqI TCGA 3 cut(s) 73, 152, 300
TasI AATT 6 cut(s) 13, 20, 41, 56, 75, 462
TatI WGTACW 1 cut(s) 138
Tru1I TTAA 5 cut(s) 78, 102, 185, 251, 281
Tru9I TTAA 5 cut(s) 78, 102, 185, 251, 281
TseI GCWGC 3 cut(s) 286, 350, 448
TspDTI ATGAA 3 cut(s) 96, 345, 441
TspGWI ACGGA 1 cut(s) 248
VspI ATTAAT 1 cut(s) 78
XapI RAATTY 2 cut(s) 41, 56
XspI CTAG 1 cut(s) 468
ZrmI AGTACT 1 cut(s) 140
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.