Rmu_sc0004550.1_g000018

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004550.1
OG0016394
Physical Location & Seq
Forward (+)
51757 .. 54716
2960 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004550.1_g000018.1.cds

Sequence Viewer

Length: 708 bp
atgaaagtggagaaaaacgaggaggagaaggagggagacagagatagcgtggagaactgtgagagagtcccaccggaaacggagagaggtcggcggtctccaattgcatcaccgatggaggatttcaatttagaattgctccaaaagttcaggaaattcaagacagaaaatttctcagagcaggatcgaattaatgaagatcaggacaataagtttaagaactatatctctgtgtcagaagagctcagccagtacttgcattcctcgatttgggagttgaaaacgcaagtcaaggacttaagaaaagaactggtttctcttagggccatgaaagatgaccaatctacggaataccagaagcacttaatggaagaagagcagaaggtggaggtgttaaagctgcgtttgaaaatcgaaaaggagaggaacagatcacaggcgaatgaaatggcttctcttagggctgcaaaggatgaggaaatcatggaataccggaagcttttgatggaagagaagcagaagaacaaagaactttctgatgaagtagagagacttcaacagctgcaagaggagctaatttctagcagattgaaggatacaaaagatgcacaactgtgtattactactgctggtggtcatgtctcacgagaaacaaccaaacacacaaagaggacaggggggagaaagataaataaccttcaagcttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

235

Amino Acids

27.83

Weight (kDa)

5.83

Isoelectric Point (pI)

59.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016394)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g24870 FvH4_7g24870 FvH4_7g24870 FvH4_7g24870
rosa_chinensis RchiOBHm_Chr1g0370751
rosa_laevigata RLG00000027013
rosa_multiflora Rmu_sc0004550.1_g000018
rosa_roxburghii Rroxscaffold_4G00286270
rosa_rugosa Rorug01G0359300 Rorug07G0063000
rosa_samantha Rh1AG368500 Rh1BG332100 Rh1CG346000 Rh1DG363500
rosa_wichuraiana Rw1G032440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 94
AclWI GGATC 1 cut(s) 192
AcsI RAATTY 2 cut(s) 155, 169
AfaI GTAC 1 cut(s) 254
AfiI CCNNNNNNNGG 2 cut(s) 270, 346
AflII CTTAAG 1 cut(s) 298
AgsI TTSAA 7 cut(s) 127, 160, 280, 409, 557, 592, 701
AleI CACNNNNGTG 1 cut(s) 613
AluBI AGCT 6 cut(s) 244, 400, 499, 562, 574, 704
AluI AGCT 6 cut(s) 244, 400, 499, 562, 574, 704
Alw21I GWGCWC 1 cut(s) 246
Alw26I GTCTC 4 cut(s) 30, 102, 544, 646
AlwI GGATC 1 cut(s) 192
AoxI GGCC 1 cut(s) 324
ApeKI GCWGC 3 cut(s) 400, 464, 562
ApoI RAATTY 2 cut(s) 155, 169
AseI ATTAAT 1 cut(s) 192
AspS9I GGNCC 1 cut(s) 324
AsuHPI GGTGA 1 cut(s) 102
BanII GRGCYC 1 cut(s) 246
BarI GAAGNNNNNNTAC 2 cut(s) 537, 569
BauI CACGAG 1 cut(s) 645
Bbv12I GWGCWC 1 cut(s) 246
BbvI GCAGC 3 cut(s) 387, 451, 549
BccI CCATC 2 cut(s) 109, 499
BciVI GTATCC 1 cut(s) 589
BcoDI GTCTC 4 cut(s) 30, 102, 544, 646
BfaI CTAG 1 cut(s) 582
BfrI CTTAAG 1 cut(s) 298
BfuI GTATCC 1 cut(s) 589
BisI GCNGC 3 cut(s) 401, 465, 563
BlpI GCTNAGC 1 cut(s) 245
BlsI GCNGC 3 cut(s) 402, 466, 564
BmcAI AGTACT 1 cut(s) 254
BmgT120I GGNCC 1 cut(s) 324
BmsI GCATC 2 cut(s) 116, 595
Bpu1102I GCTNAGC 1 cut(s) 245
BsaI GGTCTC 1 cut(s) 102
BsaWI WCCGGW 2 cut(s) 73, 492
Bsc4I CCNNNNNNNGG 2 cut(s) 270, 346
Bse1I ACTGG 2 cut(s) 250, 315
BseGI GGATG 1 cut(s) 478
BseLI CCNNNNNNNGG 2 cut(s) 270, 346
BseMII CTCAG 2 cut(s) 189, 259
BseNI ACTGG 2 cut(s) 250, 315
BseRI GAGGAG 3 cut(s) 35, 38, 584
BseXI GCAGC 3 cut(s) 387, 451, 549
BshFI GGCC 1 cut(s) 326
BsiHKAI GWGCWC 1 cut(s) 246
BsiSI CCGG 2 cut(s) 74, 493
BslFI GGGAC 1 cut(s) 53
BslI CCNNNNNNNGG 2 cut(s) 270, 346
BsmAI GTCTC 4 cut(s) 30, 102, 544, 646
BsmFI GGGAC 1 cut(s) 53
BsmI GAATGC 1 cut(s) 259
BsnI GGCC 1 cut(s) 326
Bso31I GGTCTC 1 cut(s) 102
Bsp1286I GDGCHC 1 cut(s) 246
Bsp143I GATC 3 cut(s) 184, 199, 431
Bsp1720I GCTNAGC 1 cut(s) 245
BspACI CCGC 1 cut(s) 94
BspANI GGCC 1 cut(s) 326
BspCNI CTCAG 2 cut(s) 188, 258
BspPI GGATC 1 cut(s) 192
BspQI GCTCTTC 2 cut(s) 234, 369
BspTI CTTAAG 1 cut(s) 298
BspTNI GGTCTC 1 cut(s) 102
BsrI ACTGG 2 cut(s) 250, 315
BssMI GATC 3 cut(s) 184, 199, 431
BssSI CACGAG 1 cut(s) 645
Bst2BI CACGAG 1 cut(s) 645
Bst4CI ACNGT 2 cut(s) 59, 615
Bst6I CTCTTC 3 cut(s) 234, 369, 504
BstAFI CTTAAG 1 cut(s) 298
BstDEI CTNAG 4 cut(s) 175, 245, 320, 458
BstF5I GGATG 1 cut(s) 478
BstKTI GATC 3 cut(s) 187, 202, 434
BstMAI GTCTC 4 cut(s) 30, 102, 544, 646
BstMBI GATC 3 cut(s) 184, 199, 431
BstMWI GCNNNNNNNGC 1 cut(s) 571
BstV1I GCAGC 3 cut(s) 387, 451, 549
BsuI GTATCC 1 cut(s) 589
BsuRI GGCC 1 cut(s) 326
BtsCI GGATG 1 cut(s) 478
Cfr13I GGNCC 1 cut(s) 324
Csp6I GTAC 1 cut(s) 253
CviAII CATG 3 cut(s) 328, 484, 638
CviQI GTAC 1 cut(s) 253
DdeI CTNAG 4 cut(s) 175, 245, 320, 458
DpnI GATC 3 cut(s) 186, 201, 433
DpnII GATC 3 cut(s) 184, 199, 431
Eam1104I CTCTTC 3 cut(s) 234, 369, 504
EarI CTCTTC 3 cut(s) 234, 369, 504
Ecl136II GAGCTC 1 cut(s) 244
Eco24I GRGCYC 1 cut(s) 246
Eco31I GGTCTC 1 cut(s) 102
Eco53kI GAGCTC 1 cut(s) 244
EcoICRI GAGCTC 1 cut(s) 244
EcoT38I GRGCYC 1 cut(s) 246
FaeI CATG 3 cut(s) 331, 487, 641
FaiI YATR 4 cut(s) 225, 329, 485, 639
FaqI GGGAC 1 cut(s) 53
FatI CATG 3 cut(s) 327, 483, 637
Fnu4HI GCNGC 3 cut(s) 401, 465, 563
FokI GGATG 1 cut(s) 485
FriOI GRGCYC 1 cut(s) 246
Fsp4HI GCNGC 3 cut(s) 401, 465, 563
FspBI CTAG 1 cut(s) 582
GluI GCNGC 3 cut(s) 401, 465, 563
HaeIII GGCC 1 cut(s) 326
HapII CCGG 2 cut(s) 74, 493
Hin1II CATG 3 cut(s) 331, 487, 641
HindIII AAGCTT 2 cut(s) 497, 702
HinfI GANTC 1 cut(s) 66
HpaII CCGG 2 cut(s) 74, 493
HphI GGTGA 1 cut(s) 102
Hpy188I TCNGA 3 cut(s) 178, 238, 538
Hpy188III TCNNGA 4 cut(s) 151, 160, 203, 645
HpyAV CCTTC 4 cut(s) 22, 376, 586, 707
HpyCH4III ACNGT 2 cut(s) 59, 615
HpyCH4V TGCA 5 cut(s) 107, 259, 467, 565, 608
HpyF10VI GCNNNNNNNGC 1 cut(s) 571
HpyF3I CTNAG 4 cut(s) 175, 245, 320, 458
Hsp92II CATG 3 cut(s) 331, 487, 641
Kzo9I GATC 3 cut(s) 184, 199, 431
LguI GCTCTTC 2 cut(s) 234, 369
LmnI GCTCC 2 cut(s) 144, 571
Lsp1109I GCAGC 3 cut(s) 387, 451, 549
LweI GCATC 2 cut(s) 116, 595
MaeI CTAG 1 cut(s) 582
MalI GATC 3 cut(s) 186, 201, 433
MboI GATC 3 cut(s) 184, 199, 431
MboII GAAGA 6 cut(s) 209, 251, 383, 386, 521, 532
MfeI CAATTG 1 cut(s) 102
MhlI GDGCHC 1 cut(s) 246
MluCI AATT 7 cut(s) 102, 127, 134, 155, 169, 189, 576
MlyI GAGTC 1 cut(s) 75
MseI TTAA 5 cut(s) 192, 216, 299, 365, 395
MslI CAYNNNNRTG 1 cut(s) 613
MspA1I CMGCKG 1 cut(s) 562
MspCI CTTAAG 1 cut(s) 298
MspI CCGG 2 cut(s) 74, 493
MunI CAATTG 1 cut(s) 102
Mva1269I GAATGC 1 cut(s) 259
MwoI GCNNNNNNNGC 1 cut(s) 571
NdeII GATC 3 cut(s) 184, 199, 431
NlaIII CATG 3 cut(s) 331, 487, 641
OliI CACNNNNGTG 1 cut(s) 613
PciSI GCTCTTC 2 cut(s) 234, 369
PctI GAATGC 1 cut(s) 259
PkrI GCNGC 3 cut(s) 402, 466, 564
PleI GAGTC 1 cut(s) 74
PpsI GAGTC 1 cut(s) 74
PshBI ATTAAT 1 cut(s) 192
Psp124BI GAGCTC 1 cut(s) 246
PspPI GGNCC 1 cut(s) 324
PvuII CAGCTG 1 cut(s) 562
RsaI GTAC 1 cut(s) 254
RsaNI GTAC 1 cut(s) 253
RseI CAYNNNNRTG 1 cut(s) 613
SacI GAGCTC 1 cut(s) 246
SapI GCTCTTC 2 cut(s) 234, 369
SaqAI TTAA 5 cut(s) 192, 216, 299, 365, 395
SatI GCNGC 3 cut(s) 401, 465, 563
Sau3AI GATC 3 cut(s) 184, 199, 431
Sau96I GGNCC 1 cut(s) 324
ScaI AGTACT 1 cut(s) 254
SchI GAGTC 1 cut(s) 75
SduI GDGCHC 1 cut(s) 246
SfaNI GCATC 2 cut(s) 116, 595
SmiMI CAYNNNNRTG 1 cut(s) 613
SmlI CTYRAG 1 cut(s) 298
SmoI CTYRAG 1 cut(s) 298
Sse9I AATT 7 cut(s) 102, 127, 134, 155, 169, 189, 576
SsiI CCGC 1 cut(s) 94
SspMI CTAG 1 cut(s) 582
SstI GAGCTC 1 cut(s) 246
TaaI ACNGT 2 cut(s) 59, 615
TaqI TCGA 3 cut(s) 187, 266, 414
TasI AATT 7 cut(s) 102, 127, 134, 155, 169, 189, 576
TatI WGTACW 1 cut(s) 252
Tru1I TTAA 5 cut(s) 192, 216, 299, 365, 395
Tru9I TTAA 5 cut(s) 192, 216, 299, 365, 395
TseI GCWGC 3 cut(s) 400, 464, 562
TspDTI ATGAA 5 cut(s) 17, 210, 344, 459, 555
TspGWI ACGGA 2 cut(s) 95, 362
Vha464I CTTAAG 1 cut(s) 298
VspI ATTAAT 1 cut(s) 192
XapI RAATTY 2 cut(s) 155, 169
XspI CTAG 1 cut(s) 582
ZrmI AGTACT 1 cut(s) 254
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.