Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0014804

Physical Location & Seq

Genomic Coordinates Reverse (-)

19265849 .. 19267988

Gene Structure 2140 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g25200.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1137 bp

ATGGGTGCTTATAATCAAGGTTCGAATGGGTTTTCGCAGCCCTTGGATAGTTCTAGGAAGAGGAGGCGAAGTAAAAACGATGCAGGCAGTGTTGAGGAGACTCTGTCGAGGTGGAAAGAGATTAACAGGCTTAAGGAGGCTGGGATCTACGGTGATAAGATACGCAAGGTACAGTCCAAGGGGTCGAAGAAGGGTTGTATGAAAGGTAAAGGAGGGCCGGAGAATCAGCGGTGTAATTACAGAGGTGTTAGGCAGAGGACGTGGGGGAAGTGGGTTGCAGAGATTCGAGAGCCCAACAGAGGGAGTAGGCTTTGGTTAGGTACTTTCCCCACGGCTGTTGATGCTGCGCTTGCTTATGATGAGGCTGCTAAAGCCATGTATGGTGCCAATGCCCGCCTTAACCAGCCTAATGTGAACAATCGCAATAGTTATGTGTCTTCTTGGAATGAATCGTCACATGAAACTTCGTCAGTTACCACTCCATCAGGGTGTTCTACGGTGGCGAAACAAGGATGCTGCGAGTCTACTACGATGTCTAATCAGTCTGATCACTCCGAGGTCTGTGCAGAGGAGGAATCCGTTAAAGTGAAAACCGAGGATGGTGAGGGTGAATTGACTAGTCGTGCTTGGTCTAATGCGTATACTGAACCCAGTGCCTCTAATGCCACACAGGATGTAGATGTGAAAAGCGAGGTTCCTATGGATCACGCTCATACAGATCAACCTGGTGTCCAAGAGCAAGCACTTGACTGGATTGGTTTTGATGTCAATTATTTGAATCAGTTTTCACTGGAAGAGCTTCTCTTTGTGGATGACTTAGTCGGCCCTACGGATGATAAACCCATTCCTACCCTGAAATTGCAGCAAGATACAAGCTCTGATGTTGGTCGTTCTCAGTTTGCGGACACGGCCCCTGTTGAGAGTGCCACGCCGTCGAATTCATCATACCAGGTGCAGTATCCAGATGGCACGACTTCCGGGAGTGTTCAGCATATGGACCAGGAGCCTTCTGTTGCTGACTATGGCTTTGATTTGTTAAATCTTCAGTTGCAGGATGGTAATGTTGGGGTAGACAACCACAGATACTTCAACATGGATGATTTTGATTTTCATTTCCCTGGAGGAGCTGACAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0009891 GO:0009893 GO:0010033 GO:0010286 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901363 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

379

Amino Acids

41.64

Weight (kDa)

4.89

Isoelectric Point (pI)

41.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	79 - 128	1.9e-14	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014804)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g25200 FvH4_7g25200
malus_domestica	MD01G1158600.v1.1
prunus_persica	Prupe.2G256900_v2.0.a1
pyrus_communis	pycom01g17530 pycom07g20590
rosa_chinensis	RchiOBHm_Chr1g0371151
rosa_laevigata	RLG00000026982
rosa_multiflora	Rmu_co8262865.1_g000001 Rmu_sc0003714.1_g000001
rosa_roxburghii	Rroxscaffold_4G00285920
rosa_rugosa	Rorug01G0361800
rosa_samantha	Rh1AG371900 Rh1BG335300 Rh1CG348800 Rh1DG366800
rosa_wichuraiana	Rw1G032710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	12
AccB1I	GGYRCC	1 cut(s)	383
AccI	GTMKAC	3 cut(s)	524, 641, 1071
AciI	CCGC	3 cut(s)	229, 394, 902
AclWI	GGATC	2 cut(s)	152, 711
AcsI	RAATTY	1 cut(s)	937
AcuI	CTGAAG	1 cut(s)	1028
AfaI	GTAC	2 cut(s)	171, 322
AfiI	CCNNNNNNNGG	2 cut(s)	299, 300
AflII	CTTAAG	1 cut(s)	131
AgsI	TTSAA	2 cut(s)	778, 1090
AhlI	ACTAGT	1 cut(s)	617
AjiI	CACGTC	1 cut(s)	261
AjnI	CCWGG	4 cut(s)	724, 948, 999, 1117
AluBI	AGCT	3 cut(s)	799, 876, 1127
AluI	AGCT	3 cut(s)	799, 876, 1127
Alw26I	GTCTC	1 cut(s)	92
AlwI	GGATC	2 cut(s)	152, 711
AoxI	GGCC	3 cut(s)	215, 823, 909
ApeKI	GCWGC	5 cut(s)	37, 344, 365, 516, 862
ApoI	RAATTY	1 cut(s)	937
ArsI	GACNNNNNNTTYG	2 cut(s)	1010, 1042
Asp700I	GAANNNNTTC	1 cut(s)	798
AspLEI	GCGC	1 cut(s)	349
AspS9I	GGNCC	4 cut(s)	215, 824, 910, 997
AsuC2I	CCSGG	1 cut(s)	979
AsuHPI	GGTGA	3 cut(s)	164, 614, 620
AsuII	TTCGAA	1 cut(s)	23
AvaII	GGWCC	1 cut(s)	997
BanI	GGYRCC	1 cut(s)	383
BanII	GRGCYC	1 cut(s)	294
BbsI	GAAGAC	1 cut(s)	429
BbvI	GCAGC	5 cut(s)	49, 331, 352, 503, 874
BccI	CCATC	4 cut(s)	490, 593, 959, 1049
BceAI	ACGGC	3 cut(s)	348, 916, 924
BcgI	CGANNNNNNTGC	2 cut(s)	545, 579
BciT130I	CCWGG	4 cut(s)	726, 950, 1001, 1119
BciVI	GTATCC	1 cut(s)	969
BclI	TGATCA	1 cut(s)	547
BcnI	CCSGG	1 cut(s)	979
BcoDI	GTCTC	1 cut(s)	92
BcuI	ACTAGT	1 cut(s)	617
BfaI	CTAG	2 cut(s)	54, 618
BfrI	CTTAAG	1 cut(s)	131
BfuI	GTATCC	1 cut(s)	969
BisI	GCNGC	5 cut(s)	38, 345, 366, 517, 863
BlsI	GCNGC	5 cut(s)	39, 346, 367, 518, 864
Bme1390I	CCNGG	5 cut(s)	726, 950, 979, 1001, 1119
Bme18I	GGWCC	1 cut(s)	997
BmgBI	CACGTC	1 cut(s)	261
BmgT120I	GGNCC	4 cut(s)	215, 824, 910, 997
BmiI	GGNNCC	4 cut(s)	385, 696, 912, 1005
BmrFI	CCNGG	5 cut(s)	726, 950, 979, 1001, 1119
BmrI	ACTGGG	1 cut(s)	645
BmsI	GCATC	3 cut(s)	70, 331, 503
BmuI	ACTGGG	1 cut(s)	645
BpiI	GAAGAC	1 cut(s)	429
Bpu14I	TTCGAA	1 cut(s)	23
BpuMI	CCSGG	1 cut(s)	979
BsaJI	CCNNGG	6 cut(s)	42, 177, 330, 555, 594, 1117
BsaXI	ACNNNNNCTCC	4 cut(s)	55, 85, 89, 119
Bsc4I	CCNNNNNNNGG	2 cut(s)	299, 300
Bse1I	ACTGG	3 cut(s)	651, 755, 795
BseBI	CCWGG	4 cut(s)	726, 950, 1001, 1119
BseDI	CCNNGG	6 cut(s)	42, 177, 330, 555, 594, 1117
BseGI	GGATG	7 cut(s)	518, 604, 679, 817, 838, 1060, 1102
BseLI	CCNNNNNNNGG	2 cut(s)	299, 300
BseMII	CTCAG	1 cut(s)	908
BseNI	ACTGG	3 cut(s)	651, 755, 795
BseRI	GAGGAG	4 cut(s)	76, 110, 584, 1137
BseXI	GCAGC	5 cut(s)	49, 331, 352, 503, 874
BseYI	CCCAGC	1 cut(s)	140
BsgI	GTGCAG	2 cut(s)	585, 974
BshFI	GGCC	3 cut(s)	217, 825, 911
BshNI	GGYRCC	1 cut(s)	383
BsiSI	CCGG	2 cut(s)	218, 978
BslI	CCNNNNNNNGG	2 cut(s)	299, 300
BsmAI	GTCTC	1 cut(s)	92
BsnI	GGCC	3 cut(s)	217, 825, 911
Bsp119I	TTCGAA	1 cut(s)	23
Bsp1286I	GDGCHC	1 cut(s)	294
Bsp143I	GATC	4 cut(s)	144, 547, 703, 718
BspACI	CCGC	3 cut(s)	229, 394, 902
BspANI	GGCC	3 cut(s)	217, 825, 911
BspCNI	CTCAG	1 cut(s)	907
BspLI	GGNNCC	4 cut(s)	385, 696, 912, 1005
BspPI	GGATC	2 cut(s)	152, 711
BspQI	GCTCTTC	1 cut(s)	789
BspT104I	TTCGAA	1 cut(s)	23
BspT107I	GGYRCC	1 cut(s)	383
BspTI	CTTAAG	1 cut(s)	131
BsrI	ACTGG	3 cut(s)	651, 755, 795
BssECI	CCNNGG	6 cut(s)	42, 177, 330, 555, 594, 1117
BssMI	GATC	4 cut(s)	144, 547, 703, 718
BssNAI	GTATAC	1 cut(s)	642
BssT1I	CCWWGG	2 cut(s)	42, 177
Bst1107I	GTATAC	1 cut(s)	642
Bst2UI	CCWGG	4 cut(s)	726, 950, 1001, 1119
Bst4CI	ACNGT	3 cut(s)	152, 174, 499
Bst6I	CTCTTC	2 cut(s)	53, 789
BstAFI	CTTAAG	1 cut(s)	131
BstBI	TTCGAA	1 cut(s)	23
BstC8I	GCNNGC	4 cut(s)	85, 351, 394, 741
BstDEI	CTNAG	2 cut(s)	817, 894
BstDSI	CCRYGG	1 cut(s)	330
BstF5I	GGATG	7 cut(s)	518, 604, 679, 817, 838, 1060, 1102
BstHHI	GCGC	1 cut(s)	349
BstKTI	GATC	4 cut(s)	147, 550, 706, 721
BstMAI	GTCTC	1 cut(s)	92
BstMBI	GATC	4 cut(s)	144, 547, 703, 718
BstMWI	GCNNNNNNNGC	5 cut(s)	341, 350, 371, 662, 908
BstNI	CCWGG	4 cut(s)	726, 950, 1001, 1119
BstSCI	CCNGG	5 cut(s)	724, 948, 977, 999, 1117
BstV1I	GCAGC	5 cut(s)	49, 331, 352, 503, 874
BstV2I	GAAGAC	1 cut(s)	429
BstX2I	RGATCY	1 cut(s)	144
BstYI	RGATCY	1 cut(s)	144
BstZ17I	GTATAC	1 cut(s)	642
BsuI	GTATCC	1 cut(s)	969
BsuRI	GGCC	3 cut(s)	217, 825, 911
BtgI	CCRYGG	1 cut(s)	330
BtrI	CACGTC	1 cut(s)	261
BtsCI	GGATG	7 cut(s)	518, 604, 679, 817, 838, 1060, 1102
BtsI	GCAGTG	1 cut(s)	94
BtsIMutI	CAGTG	3 cut(s)	94, 658, 788
Cac8I	GCNNGC	4 cut(s)	85, 351, 394, 741
CfoI	GCGC	1 cut(s)	349
Cfr13I	GGNCC	4 cut(s)	215, 824, 910, 997
CsiI	ACCWGGT	2 cut(s)	724, 948
Csp6I	GTAC	2 cut(s)	170, 321
CspCI	CAANNNNNGTGG	2 cut(s)	319, 354
CviAII	CATG	3 cut(s)	376, 458, 1093
CviQI	GTAC	2 cut(s)	170, 321
DdeI	CTNAG	2 cut(s)	817, 894
DpnI	GATC	4 cut(s)	146, 549, 705, 720
DpnII	GATC	4 cut(s)	144, 547, 703, 718
Eam1104I	CTCTTC	2 cut(s)	53, 789
EarI	CTCTTC	2 cut(s)	53, 789
Eco130I	CCWWGG	2 cut(s)	42, 177
Eco24I	GRGCYC	1 cut(s)	294
Eco47I	GGWCC	1 cut(s)	997
Eco57I	CTGAAG	1 cut(s)	1028
EcoRI	GAATTC	1 cut(s)	937
EcoRII	CCWGG	4 cut(s)	724, 948, 999, 1117
EcoT14I	CCWWGG	2 cut(s)	42, 177
EcoT38I	GRGCYC	1 cut(s)	294
ErhI	CCWWGG	2 cut(s)	42, 177
FaeI	CATG	3 cut(s)	379, 461, 1096
FatI	CATG	3 cut(s)	375, 457, 1092
FauI	CCCGC	1 cut(s)	401
FauNDI	CATATG	1 cut(s)	993
FbaI	TGATCA	1 cut(s)	547
FblI	GTMKAC	3 cut(s)	524, 641, 1071
Fnu4HI	GCNGC	5 cut(s)	38, 345, 366, 517, 863
FokI	GGATG	7 cut(s)	525, 611, 686, 824, 845, 1067, 1109
FriOI	GRGCYC	1 cut(s)	294
Fsp4HI	GCNGC	5 cut(s)	38, 345, 366, 517, 863
FspBI	CTAG	2 cut(s)	54, 618
GlaI	GCGC	1 cut(s)	348
GluI	GCNGC	5 cut(s)	38, 345, 366, 517, 863
GsaI	CCCAGC	1 cut(s)	144
HaeIII	GGCC	3 cut(s)	217, 825, 911
HapII	CCGG	2 cut(s)	218, 978
HhaI	GCGC	1 cut(s)	349
Hin1II	CATG	3 cut(s)	379, 461, 1096
Hin6I	GCGC	1 cut(s)	347
HinP1I	GCGC	1 cut(s)	347
HinfI	GANTC	7 cut(s)	100, 223, 283, 449, 521, 575, 778
HpaII	CCGG	2 cut(s)	218, 978
HphI	GGTGA	3 cut(s)	164, 614, 620
Hpy166II	GTNNAC	4 cut(s)	415, 525, 642, 1072
Hpy188I	TCNGA	3 cut(s)	547, 556, 880
Hpy188III	TCNNGA	2 cut(s)	287, 962
Hpy8I	GTNNAC	4 cut(s)	415, 525, 642, 1072
Hpy99I	CGWCG	1 cut(s)	937
HpyAV	CCTTC	2 cut(s)	184, 1017
HpyCH4III	ACNGT	3 cut(s)	152, 174, 499
HpyCH4IV	ACGT	1 cut(s)	260
HpyCH4V	TGCA	6 cut(s)	83, 278, 566, 862, 955, 1051
HpyF10VI	GCNNNNNNNGC	5 cut(s)	341, 350, 371, 662, 908
HpyF3I	CTNAG	2 cut(s)	817, 894
HpySE526I	ACGT	1 cut(s)	260
Hsp92II	CATG	3 cut(s)	379, 461, 1096
HspAI	GCGC	1 cut(s)	347
Ksp22I	TGATCA	1 cut(s)	547
Kzo9I	GATC	4 cut(s)	144, 547, 703, 718
LguI	GCTCTTC	1 cut(s)	789
LmnI	GCTCC	2 cut(s)	1003, 1124
Lsp1109I	GCAGC	5 cut(s)	49, 331, 352, 503, 874
LweI	GCATC	3 cut(s)	70, 331, 503
MabI	ACCWGGT	2 cut(s)	724, 948
MaeI	CTAG	2 cut(s)	54, 618
MaeII	ACGT	1 cut(s)	260
MaeIII	GTNAC	2 cut(s)	453, 472
MalI	GATC	4 cut(s)	146, 549, 705, 720
MboI	GATC	4 cut(s)	144, 547, 703, 718
MboII	GAAGA	5 cut(s)	70, 199, 429, 806, 1034
MflI	RGATCY	1 cut(s)	144
MhlI	GDGCHC	1 cut(s)	294
MluCI	AATT	5 cut(s)	235, 611, 769, 857, 937
MlyI	GAGTC	2 cut(s)	94, 530
MroXI	GAANNNNTTC	1 cut(s)	798
MseI	TTAA	5 cut(s)	123, 132, 399, 582, 1037
MslI	CAYNNNNRTG	1 cut(s)	487
MspA1I	CMGCKG	1 cut(s)	229
MspCI	CTTAAG	1 cut(s)	131
MspI	CCGG	2 cut(s)	218, 978
MspR9I	CCNGG	5 cut(s)	726, 950, 979, 1001, 1119
MvaI	CCWGG	4 cut(s)	726, 950, 1001, 1119
MwoI	GCNNNNNNNGC	5 cut(s)	341, 350, 371, 662, 908
NciI	CCSGG	1 cut(s)	979
NdeI	CATATG	1 cut(s)	993
NdeII	GATC	4 cut(s)	144, 547, 703, 718
NlaIII	CATG	3 cut(s)	379, 461, 1096
NlaIV	GGNNCC	4 cut(s)	385, 696, 912, 1005
NmuCI	GTSAC	1 cut(s)	453
NspV	TTCGAA	1 cut(s)	23
PciSI	GCTCTTC	1 cut(s)	789
PdmI	GAANNNNTTC	1 cut(s)	798
PfeI	GAWTC	5 cut(s)	223, 283, 449, 575, 778
PflFI	GACNNNGTC	2 cut(s)	103, 818
PfoI	TCCNGGA	1 cut(s)	977
PkrI	GCNGC	5 cut(s)	39, 346, 367, 518, 864
PleI	GAGTC	2 cut(s)	94, 529
PpsI	GAGTC	2 cut(s)	94, 529
PsiI	TTATAA	1 cut(s)	12
Psp6I	CCWGG	4 cut(s)	724, 948, 999, 1117
PspFI	CCCAGC	1 cut(s)	140
PspGI	CCWGG	4 cut(s)	724, 948, 999, 1117
PspN4I	GGNNCC	4 cut(s)	385, 696, 912, 1005
PspPI	GGNCC	4 cut(s)	215, 824, 910, 997
PsuI	RGATCY	1 cut(s)	144
PsyI	GACNNNGTC	2 cut(s)	103, 818
RsaI	GTAC	2 cut(s)	171, 322
RsaNI	GTAC	2 cut(s)	170, 321
RseI	CAYNNNNRTG	1 cut(s)	487
SapI	GCTCTTC	1 cut(s)	789
SaqAI	TTAA	5 cut(s)	123, 132, 399, 582, 1037
SatI	GCNGC	5 cut(s)	38, 345, 366, 517, 863
Sau3AI	GATC	4 cut(s)	144, 547, 703, 718
Sau96I	GGNCC	4 cut(s)	215, 824, 910, 997
SchI	GAGTC	2 cut(s)	94, 530
ScrFI	CCNGG	5 cut(s)	726, 950, 979, 1001, 1119
SduI	GDGCHC	1 cut(s)	294
SexAI	ACCWGGT	2 cut(s)	724, 948
SfaNI	GCATC	3 cut(s)	70, 331, 503
SfuI	TTCGAA	1 cut(s)	23
SinI	GGWCC	1 cut(s)	997
SmiMI	CAYNNNNRTG	1 cut(s)	487
SmlI	CTYRAG	1 cut(s)	131
SmoI	CTYRAG	1 cut(s)	131
SpeI	ACTAGT	1 cut(s)	617
Sse9I	AATT	5 cut(s)	235, 611, 769, 857, 937
SsiI	CCGC	3 cut(s)	229, 394, 902
SspMI	CTAG	2 cut(s)	54, 618
StyD4I	CCNGG	5 cut(s)	724, 948, 977, 999, 1117
StyI	CCWWGG	2 cut(s)	42, 177
TaaI	ACNGT	3 cut(s)	152, 174, 499
TaiI	ACGT	1 cut(s)	263
TaqI	TCGA	5 cut(s)	23, 107, 185, 286, 935
TasI	AATT	5 cut(s)	235, 611, 769, 857, 937
TfiI	GAWTC	5 cut(s)	223, 283, 449, 575, 778
Tru1I	TTAA	5 cut(s)	123, 132, 399, 582, 1037
Tru9I	TTAA	5 cut(s)	123, 132, 399, 582, 1037
TscAI	CASTG	3 cut(s)	94, 658, 795
TseFI	GTSAC	1 cut(s)	453
TseI	GCWGC	5 cut(s)	37, 344, 365, 516, 862
Tsp45I	GTSAC	1 cut(s)	453
TspDTI	ATGAA	5 cut(s)	215, 462, 474, 930, 1100
TspGWI	ACGGA	2 cut(s)	568, 845
TspRI	CASTG	3 cut(s)	94, 658, 795
Tth111I	GACNNNGTC	2 cut(s)	103, 818
Vha464I	CTTAAG	1 cut(s)	131
VpaK11BI	GGWCC	1 cut(s)	997
XapI	RAATTY	1 cut(s)	937
XmiI	GTMKAC	3 cut(s)	524, 641, 1071
XmnI	GAANNNNTTC	1 cut(s)	798
XspI	CTAG	2 cut(s)	54, 618

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.