Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8262865.1

Orthogroup ID

OG0014804

Physical Location & Seq

Genomic Coordinates Reverse (-)

73 .. 699

Gene Structure 627 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8262865.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

atgatatcaaatcagtctgatcactccgagatcagtgcagaggaggaatcttttatagtgaaaactgaggatggtgaggatgaatcgactagtcataatgcatttactcaacccaggacgtctaatgctacggcagatgtagaagtgaaaagtgaggttcctatgcaccacttccacacagatcaacctggagtccaagagcaggcacgtgactggattagcacagatggctttgatatggattattacttgaagcagttttcaattgatgagctttttgatgtggacgagcttgtcggccctatggatggtaaacccatccctgctccgagattgcagcaagatttaagctccgatgttggtcgtcctcagttcacggatatggtccctgttgataataatgccacactatcggattcatcataccagttacagtatccagatgacaagcctcctggtggtaatgtgcagcatatggacgtggagccatcagttgccgactatggttttgatttgttaaatcgtcagatgcaagagaataatgttggagtagataatcacggatacttcaacgtagatgatttcgatttcaatttcactggaggctgcggcggcaatgcaaactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0009891 GO:0009893 GO:0010033 GO:0010286 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901363 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

208

Amino Acids

23.19

Weight (kDa)

4.05

Isoelectric Point (pI)

38.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014804)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g25200 FvH4_7g25200
malus_domestica	MD01G1158600.v1.1
prunus_persica	Prupe.2G256900_v2.0.a1
pyrus_communis	pycom01g17530 pycom07g20590
rosa_chinensis	RchiOBHm_Chr1g0371151
rosa_laevigata	RLG00000026982
rosa_multiflora	Rmu_co8262865.1_g000001 Rmu_sc0003714.1_g000001
rosa_roxburghii	Rroxscaffold_4G00285920
rosa_rugosa	Rorug01G0361800
rosa_samantha	Rh1AG371900 Rh1BG335300 Rh1CG348800 Rh1DG366800
rosa_wichuraiana	Rw1G032710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	293
AatII	GACGTC	1 cut(s)	122
AciI	CCGC	2 cut(s)	609, 612
AcvI	CACGTG	1 cut(s)	209
AcyI	GRCGYC	1 cut(s)	119
AfiI	CCNNNNNNNGG	3 cut(s)	202, 308, 458
AgsI	TTSAA	4 cut(s)	253, 264, 571, 592
AhlI	ACTAGT	1 cut(s)	89
AjiI	CACGTC	1 cut(s)	481
AjnI	CCWGG	3 cut(s)	113, 187, 454
AluBI	AGCT	3 cut(s)	274, 292, 351
AluI	AGCT	3 cut(s)	274, 292, 351
AoxI	GGCC	1 cut(s)	298
ApeKI	GCWGC	3 cut(s)	337, 469, 606
ArsI	GACNNNNNNTTYG	2 cut(s)	491, 523
AspS9I	GGNCC	2 cut(s)	299, 385
AsuHPI	GGTGA	1 cut(s)	86
AvaII	GGWCC	1 cut(s)	385
BbrPI	CACGTG	1 cut(s)	209
BbvI	GCAGC	3 cut(s)	349, 481, 593
BccI	CCATC	5 cut(s)	65, 221, 302, 326, 496
BceAI	ACGGC	1 cut(s)	147
BcgI	CGANNNNNNTGC	2 cut(s)	17, 51
BciT130I	CCWGG	3 cut(s)	115, 189, 456
BciVI	GTATCC	2 cut(s)	447, 557
BclI	TGATCA	1 cut(s)	19
BcuI	ACTAGT	1 cut(s)	89
BfaI	CTAG	1 cut(s)	90
BfuI	GTATCC	2 cut(s)	447, 557
BisI	GCNGC	5 cut(s)	338, 470, 607, 610, 613
BlsI	GCNGC	5 cut(s)	339, 471, 608, 611, 614
Bme1390I	CCNGG	3 cut(s)	115, 189, 456
Bme18I	GGWCC	1 cut(s)	385
BmgBI	CACGTC	1 cut(s)	481
BmgT120I	GGNCC	2 cut(s)	299, 385
BmiI	GGNNCC	3 cut(s)	159, 387, 486
BmrFI	CCNGG	3 cut(s)	115, 189, 456
BmsI	GCATC	1 cut(s)	519
BpmI	CTGGAG	2 cut(s)	210, 621
BsaAI	YACGTR	1 cut(s)	209
BsaHI	GRCGYC	1 cut(s)	119
BsaJI	CCNNGG	1 cut(s)	113
Bsc4I	CCNNNNNNNGG	3 cut(s)	202, 308, 458
Bse1I	ACTGG	3 cut(s)	218, 427, 604
Bse3DI	GCAATG	1 cut(s)	622
BseBI	CCWGG	3 cut(s)	115, 189, 456
BseDI	CCNNGG	1 cut(s)	113
BseGI	GGATG	4 cut(s)	76, 85, 313, 318
BseLI	CCNNNNNNNGG	3 cut(s)	202, 308, 458
BseMI	GCAATG	1 cut(s)	622
BseMII	CTCAG	2 cut(s)	57, 383
BseNI	ACTGG	3 cut(s)	218, 427, 604
BseRI	GAGGAG	1 cut(s)	56
BseXI	GCAGC	3 cut(s)	349, 481, 593
BsgI	GTGCAG	2 cut(s)	57, 488
BshFI	GGCC	1 cut(s)	300
BslFI	GGGAC	1 cut(s)	371
BslI	CCNNNNNNNGG	3 cut(s)	202, 308, 458
BsmFI	GGGAC	1 cut(s)	371
BsnI	GGCC	1 cut(s)	300
Bsp143I	GATC	3 cut(s)	19, 30, 181
BspACI	CCGC	2 cut(s)	609, 612
BspANI	GGCC	1 cut(s)	300
BspCNI	CTCAG	2 cut(s)	58, 382
BspLI	GGNNCC	3 cut(s)	159, 387, 486
BsrDI	GCAATG	1 cut(s)	622
BsrI	ACTGG	3 cut(s)	218, 427, 604
BssECI	CCNNGG	1 cut(s)	113
BssMI	GATC	3 cut(s)	19, 30, 181
BssNI	GRCGYC	1 cut(s)	119
Bst2UI	CCWGG	3 cut(s)	115, 189, 456
Bst4CI	ACNGT	1 cut(s)	435
BstACI	GRCGYC	1 cut(s)	119
BstBAI	YACGTR	1 cut(s)	209
BstC8I	GCNNGC	1 cut(s)	204
BstDEI	CTNAG	2 cut(s)	66, 369
BstF5I	GGATG	4 cut(s)	76, 85, 313, 318
BstKTI	GATC	3 cut(s)	22, 33, 184
BstMBI	GATC	3 cut(s)	19, 30, 181
BstMWI	GCNNNNNNNGC	2 cut(s)	228, 612
BstNI	CCWGG	3 cut(s)	115, 189, 456
BstSCI	CCNGG	3 cut(s)	113, 187, 454
BstV1I	GCAGC	3 cut(s)	349, 481, 593
BsuI	GTATCC	2 cut(s)	447, 557
BsuRI	GGCC	1 cut(s)	300
BtrI	CACGTC	1 cut(s)	481
BtsCI	GGATG	4 cut(s)	76, 85, 313, 318
BtsIMutI	CAGTG	2 cut(s)	40, 597
Cac8I	GCNNGC	1 cut(s)	204
Cfr13I	GGNCC	2 cut(s)	299, 385
CviJI	RGCY	8 cut(s)	231, 274, 292, 300, 351, 451, 487, 606
CviKI_1	RGCY	8 cut(s)	231, 274, 292, 300, 351, 451, 487, 606
DdeI	CTNAG	2 cut(s)	66, 369
DpnI	GATC	3 cut(s)	21, 32, 183
DpnII	GATC	3 cut(s)	19, 30, 181
DrdI	GACNNNNNNGTC	1 cut(s)	293
DseDI	GACNNNNNNGTC	1 cut(s)	293
Eco32I	GATATC	1 cut(s)	6
Eco47I	GGWCC	1 cut(s)	385
Eco72I	CACGTG	1 cut(s)	209
EcoRII	CCWGG	3 cut(s)	113, 187, 454
EcoRV	GATATC	1 cut(s)	6
EcoT22I	ATGCAT	1 cut(s)	103
FaqI	GGGAC	1 cut(s)	371
FauNDI	CATATG	1 cut(s)	474
FbaI	TGATCA	1 cut(s)	19
Fnu4HI	GCNGC	5 cut(s)	338, 470, 607, 610, 613
FokI	GGATG	4 cut(s)	83, 92, 305, 320
Fsp4HI	GCNGC	5 cut(s)	338, 470, 607, 610, 613
FspBI	CTAG	1 cut(s)	90
GluI	GCNGC	5 cut(s)	338, 470, 607, 610, 613
GsuI	CTGGAG	2 cut(s)	210, 621
HaeIII	GGCC	1 cut(s)	300
Hin1I	GRCGYC	1 cut(s)	119
HinfI	GANTC	4 cut(s)	47, 83, 192, 416
HphI	GGTGA	1 cut(s)	86
Hpy166II	GTNNAC	3 cut(s)	286, 314, 375
Hpy188I	TCNGA	6 cut(s)	19, 28, 330, 355, 415, 528
Hpy188III	TCNNGA	1 cut(s)	440
Hpy8I	GTNNAC	3 cut(s)	286, 314, 375
HpyCH4III	ACNGT	1 cut(s)	435
HpyCH4IV	ACGT	4 cut(s)	119, 208, 480, 573
HpyCH4V	TGCA	7 cut(s)	38, 101, 166, 337, 469, 532, 620
HpyF10VI	GCNNNNNNNGC	2 cut(s)	228, 612
HpyF3I	CTNAG	2 cut(s)	66, 369
HpySE526I	ACGT	4 cut(s)	119, 208, 480, 573
Hsp92I	GRCGYC	1 cut(s)	119
Ksp22I	TGATCA	1 cut(s)	19
Kzo9I	GATC	3 cut(s)	19, 30, 181
LmnI	GCTCC	3 cut(s)	331, 356, 484
Lsp1109I	GCAGC	3 cut(s)	349, 481, 593
LweI	GCATC	1 cut(s)	519
MaeI	CTAG	1 cut(s)	90
MaeII	ACGT	4 cut(s)	119, 208, 480, 573
MaeIII	GTNAC	2 cut(s)	209, 429
MalI	GATC	3 cut(s)	21, 32, 183
MboI	GATC	3 cut(s)	19, 30, 181
MfeI	CAATTG	1 cut(s)	264
MluCI	AATT	2 cut(s)	264, 592
MlyI	GAGTC	1 cut(s)	201
MmeI	TCCRAC	1 cut(s)	526
MnlI	CCTC	8 cut(s)	34, 37, 61, 70, 148, 378, 462, 596
Mph1103I	ATGCAT	1 cut(s)	103
MseI	TTAA	2 cut(s)	347, 518
MslI	CAYNNNNRTG	1 cut(s)	380
MspR9I	CCNGG	3 cut(s)	115, 189, 456
MunI	CAATTG	1 cut(s)	264
MvaI	CCWGG	3 cut(s)	115, 189, 456
MwoI	GCNNNNNNNGC	2 cut(s)	228, 612
NdeI	CATATG	1 cut(s)	474
NdeII	GATC	3 cut(s)	19, 30, 181
NlaIV	GGNNCC	3 cut(s)	159, 387, 486
NmuCI	GTSAC	1 cut(s)	209
NsiI	ATGCAT	1 cut(s)	103
PfeI	GAWTC	3 cut(s)	47, 83, 416
PkrI	GCNGC	5 cut(s)	339, 471, 608, 611, 614
PleI	GAGTC	1 cut(s)	200
PmaCI	CACGTG	1 cut(s)	209
PmlI	CACGTG	1 cut(s)	209
PpsI	GAGTC	1 cut(s)	200
Ppu21I	YACGTR	1 cut(s)	209
Psp6I	CCWGG	3 cut(s)	113, 187, 454
PspCI	CACGTG	1 cut(s)	209
PspGI	CCWGG	3 cut(s)	113, 187, 454
PspN4I	GGNNCC	3 cut(s)	159, 387, 486
PspPI	GGNCC	2 cut(s)	299, 385
RseI	CAYNNNNRTG	1 cut(s)	380
SaqAI	TTAA	2 cut(s)	347, 518
SatI	GCNGC	5 cut(s)	338, 470, 607, 610, 613
Sau3AI	GATC	3 cut(s)	19, 30, 181
Sau96I	GGNCC	2 cut(s)	299, 385
SchI	GAGTC	1 cut(s)	201
ScrFI	CCNGG	3 cut(s)	115, 189, 456
SetI	ASST	9 cut(s)	122, 159, 190, 211, 276, 294, 353, 483, 576
SfaNI	GCATC	1 cut(s)	519
SinI	GGWCC	1 cut(s)	385
SmiMI	CAYNNNNRTG	1 cut(s)	380
SpeI	ACTAGT	1 cut(s)	89
Sse9I	AATT	2 cut(s)	264, 592
SsiI	CCGC	2 cut(s)	609, 612
SspMI	CTAG	1 cut(s)	90
StyD4I	CCNGG	3 cut(s)	113, 187, 454
TaaI	ACNGT	1 cut(s)	435
TaiI	ACGT	4 cut(s)	122, 211, 483, 576
TaqI	TCGA	2 cut(s)	86, 585
TasI	AATT	2 cut(s)	264, 592
TauI	GCSGC	2 cut(s)	612, 615
TfiI	GAWTC	3 cut(s)	47, 83, 416
Tru1I	TTAA	2 cut(s)	347, 518
Tru9I	TTAA	2 cut(s)	347, 518
TscAI	CASTG	2 cut(s)	40, 604
TseFI	GTSAC	1 cut(s)	209
TseI	GCWGC	3 cut(s)	337, 469, 606
Tsp45I	GTSAC	1 cut(s)	209
TspDTI	ATGAA	2 cut(s)	96, 408
TspGWI	ACGGA	2 cut(s)	392, 576
TspRI	CASTG	2 cut(s)	40, 604
VpaK11BI	GGWCC	1 cut(s)	385
XspI	CTAG	1 cut(s)	90
ZraI	GACGTC	1 cut(s)	120
Zsp2I	ATGCAT	1 cut(s)	103

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.