Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003714.1

Orthogroup ID

OG0014804

Physical Location & Seq

Genomic Coordinates Forward (+)

200 .. 1357

Gene Structure 1158 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003714.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1158 bp

atgggtgcttatgatcaaggttctaatgggttttcccagcccttgggtagttctaagaaaaggggacgacgaagtaacaaggatggagccagtgttttggagactctgtcaaggtggaaagaatataacaatcttttagagtctgggatttacgatgacaaggcgcgtaagattcaggccaaggggtcgaagaagggttgtatgaaaggtaaaggagggccggagaatcagcggtgtaattacagaggagttaggcagaggacgtggggaaagtgggttgcagaaatccgagagccgaacagaggaagtaggctttggttgggtacttttcccacggctgttgatgctgcacttgcttatgatgaagctgcaaaagccatgtatggtgccactgctcgccttaaccaccctaatgtatacagtcacaacagttatacatcttcttggaatgactcgtcacatgaaacttcgtcagtcacaactccatcagggtgttctactgtggcaacacaaggatgctgtgaatctactatgatatcaaatcagtctgatcactccgagatctgtgcagaggaggaatcttttatagtgaaaactgaggatggtgaggatgaatcgactagtcataatgcatttactcaacccaggacgtctaatgctacggcagatgtagaagtgaaaagtgaggttcctatgcaccacttccacacagatcaacctggagtccaagagcaggcacgtgactggattagcacagatggctttgatatggattattacttgaagcagttttcaattgatgagctttttgatgtggacgagcttgtcggccctatggatggtaaacccatccctgctccgagattgcagcaagatttaagctccgatgttggtcgtcctcagttcacggatatggtccctgttgataataatgccacactatcggattcatcataccagttacagtatccagatgacaagcctcctggtggtaatgtgcagcatatggacgtggagccatcagttgccgactatggttttgatttgttaaatcgtcagatgcaagagaataatgttggagtagataatcacggatacttcaacgtagatgatttcgatttcaatttcactggaggctgcggcggcaatgcaaactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0009891 GO:0009893 GO:0010033 GO:0010286 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901363 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

385

Amino Acids

42.57

Weight (kDa)

4.83

Isoelectric Point (pI)

38.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014804)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g25200 FvH4_7g25200
malus_domestica	MD01G1158600.v1.1
prunus_persica	Prupe.2G256900_v2.0.a1
pyrus_communis	pycom01g17530 pycom07g20590
rosa_chinensis	RchiOBHm_Chr1g0371151
rosa_laevigata	RLG00000026982
rosa_multiflora	Rmu_co8262865.1_g000001 Rmu_sc0003714.1_g000001
rosa_roxburghii	Rroxscaffold_4G00285920
rosa_rugosa	Rorug01G0361800
rosa_samantha	Rh1AG371900 Rh1BG335300 Rh1CG348800 Rh1DG366800
rosa_wichuraiana	Rw1G032710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	824
AatII	GACGTC	1 cut(s)	653
AccB1I	GGYRCC	1 cut(s)	386
AccB7I	CCANNNNNTGG	1 cut(s)	43
AccI	GTMKAC	1 cut(s)	417
AccII	CGCG	1 cut(s)	166
AciI	CCGC	3 cut(s)	232, 1140, 1143
AcvI	CACGTG	1 cut(s)	740
AcyI	GRCGYC	1 cut(s)	650
AfaI	GTAC	1 cut(s)	325
AfiI	CCNNNNNNNGG	5 cut(s)	43, 302, 733, 839, 989
AgsI	TTSAA	4 cut(s)	784, 795, 1102, 1123
AhlI	ACTAGT	1 cut(s)	620
AjiI	CACGTC	2 cut(s)	264, 1012
AjnI	CCWGG	3 cut(s)	644, 718, 985
AjuI	GAANNNNNNNTTGG	2 cut(s)	298, 330
AluBI	AGCT	4 cut(s)	368, 805, 823, 882
AluI	AGCT	4 cut(s)	368, 805, 823, 882
Alw26I	GTCTC	1 cut(s)	95
AoxI	GGCC	3 cut(s)	177, 218, 829
ApeKI	GCWGC	5 cut(s)	347, 368, 868, 1000, 1137
ArsI	GACNNNNNNTTYG	2 cut(s)	1022, 1054
AspLEI	GCGC	1 cut(s)	166
AspS9I	GGNCC	3 cut(s)	218, 830, 916
AsuHPI	GGTGA	1 cut(s)	617
AvaII	GGWCC	1 cut(s)	916
BanI	GGYRCC	1 cut(s)	386
BbrPI	CACGTG	1 cut(s)	740
BbvI	GCAGC	5 cut(s)	334, 355, 880, 1012, 1124
BccI	CCATC	7 cut(s)	77, 493, 596, 752, 833, 857, 1027
BceAI	ACGGC	2 cut(s)	351, 678
BcgI	CGANNNNNNTGC	2 cut(s)	548, 582
BciT130I	CCWGG	3 cut(s)	646, 720, 987
BciVI	GTATCC	2 cut(s)	978, 1088
BclI	TGATCA	2 cut(s)	13, 550
BcoDI	GTCTC	1 cut(s)	95
BcuI	ACTAGT	1 cut(s)	620
BfaI	CTAG	1 cut(s)	621
BfuI	GTATCC	2 cut(s)	978, 1088
BglII	AGATCT	1 cut(s)	561
BisI	GCNGC	7 cut(s)	348, 369, 869, 1001, 1138, 1141, 1144
BlsI	GCNGC	7 cut(s)	349, 370, 870, 1002, 1139, 1142, 1145
Bme1390I	CCNGG	3 cut(s)	646, 720, 987
Bme18I	GGWCC	1 cut(s)	916
BmgBI	CACGTC	2 cut(s)	264, 1012
BmgT120I	GGNCC	3 cut(s)	218, 830, 916
BmiI	GGNNCC	5 cut(s)	88, 388, 690, 918, 1017
BmrFI	CCNGG	3 cut(s)	646, 720, 987
BmsI	GCATC	3 cut(s)	334, 506, 1050
BpmI	CTGGAG	2 cut(s)	741, 1152
BsaAI	YACGTR	1 cut(s)	740
BsaHI	GRCGYC	1 cut(s)	650
BsaJI	CCNNGG	4 cut(s)	42, 180, 333, 644
BsaXI	ACNNNNNCTCC	4 cut(s)	78, 92, 108, 122
Bsc4I	CCNNNNNNNGG	5 cut(s)	43, 302, 733, 839, 989
Bse1I	ACTGG	4 cut(s)	90, 749, 958, 1135
Bse3DI	GCAATG	1 cut(s)	1153
BseBI	CCWGG	3 cut(s)	646, 720, 987
BseDI	CCNNGG	4 cut(s)	42, 180, 333, 644
BseGI	GGATG	6 cut(s)	88, 521, 607, 616, 844, 849
BseLI	CCNNNNNNNGG	5 cut(s)	43, 302, 733, 839, 989
BseMI	GCAATG	1 cut(s)	1153
BseMII	CTCAG	2 cut(s)	588, 914
BseNI	ACTGG	4 cut(s)	90, 749, 958, 1135
BseRI	GAGGAG	2 cut(s)	261, 587
BseXI	GCAGC	5 cut(s)	334, 355, 880, 1012, 1124
BseYI	CCCAGC	1 cut(s)	36
BsgI	GTGCAG	3 cut(s)	333, 588, 1019
Bsh1236I	CGCG	1 cut(s)	166
BshFI	GGCC	3 cut(s)	179, 220, 831
BshNI	GGYRCC	1 cut(s)	386
BsiSI	CCGG	1 cut(s)	221
BslFI	GGGAC	2 cut(s)	78, 902
BslI	CCNNNNNNNGG	5 cut(s)	43, 302, 733, 839, 989
BsmAI	GTCTC	1 cut(s)	95
BsmFI	GGGAC	2 cut(s)	78, 902
BsnI	GGCC	3 cut(s)	179, 220, 831
Bsp143I	GATC	4 cut(s)	13, 550, 561, 712
BspACI	CCGC	3 cut(s)	232, 1140, 1143
BspANI	GGCC	3 cut(s)	179, 220, 831
BspCNI	CTCAG	2 cut(s)	589, 913
BspFNI	CGCG	1 cut(s)	166
BspLI	GGNNCC	5 cut(s)	88, 388, 690, 918, 1017
BspT107I	GGYRCC	1 cut(s)	386
BsrDI	GCAATG	1 cut(s)	1153
BsrI	ACTGG	4 cut(s)	90, 749, 958, 1135
BssECI	CCNNGG	4 cut(s)	42, 180, 333, 644
BssMI	GATC	4 cut(s)	13, 550, 561, 712
BssNAI	GTATAC	1 cut(s)	418
BssNI	GRCGYC	1 cut(s)	650
BssT1I	CCWWGG	2 cut(s)	42, 180
Bst1107I	GTATAC	1 cut(s)	418
Bst2UI	CCWGG	3 cut(s)	646, 720, 987
Bst4CI	ACNGT	4 cut(s)	422, 431, 502, 966
BstACI	GRCGYC	1 cut(s)	650
BstBAI	YACGTR	1 cut(s)	740
BstC8I	GCNNGC	2 cut(s)	397, 735
BstDEI	CTNAG	3 cut(s)	54, 597, 900
BstDSI	CCRYGG	1 cut(s)	333
BstF5I	GGATG	6 cut(s)	88, 521, 607, 616, 844, 849
BstFNI	CGCG	1 cut(s)	166
BstHHI	GCGC	1 cut(s)	166
BstKTI	GATC	4 cut(s)	16, 553, 564, 715
BstMAI	GTCTC	1 cut(s)	95
BstMBI	GATC	4 cut(s)	13, 550, 561, 712
BstMWI	GCNNNNNNNGC	5 cut(s)	344, 353, 374, 759, 1143
BstNI	CCWGG	3 cut(s)	646, 720, 987
BstSCI	CCNGG	3 cut(s)	644, 718, 985
BstUI	CGCG	1 cut(s)	166
BstV1I	GCAGC	5 cut(s)	334, 355, 880, 1012, 1124
BstX2I	RGATCY	1 cut(s)	561
BstXI	CCANNNNNNTGG	1 cut(s)	97
BstYI	RGATCY	1 cut(s)	561
BstZ17I	GTATAC	1 cut(s)	418
BsuI	GTATCC	2 cut(s)	978, 1088
BsuRI	GGCC	3 cut(s)	179, 220, 831
BtgI	CCRYGG	1 cut(s)	333
BtrI	CACGTC	2 cut(s)	264, 1012
BtsCI	GGATG	6 cut(s)	88, 521, 607, 616, 844, 849
BtsI	GCAGTG	1 cut(s)	390
BtsIMutI	CAGTG	3 cut(s)	97, 390, 1128
Cac8I	GCNNGC	2 cut(s)	397, 735
CfoI	GCGC	1 cut(s)	166
Cfr13I	GGNCC	3 cut(s)	218, 830, 916
Csp6I	GTAC	1 cut(s)	324
CspCI	CAANNNNNGTGG	2 cut(s)	322, 357
CviAII	CATG	2 cut(s)	379, 461
CviQI	GTAC	1 cut(s)	324
DdeI	CTNAG	3 cut(s)	54, 597, 900
DpnI	GATC	4 cut(s)	15, 552, 563, 714
DpnII	GATC	4 cut(s)	13, 550, 561, 712
DrdI	GACNNNNNNGTC	1 cut(s)	824
DseDI	GACNNNNNNGTC	1 cut(s)	824
Eco130I	CCWWGG	2 cut(s)	42, 180
Eco32I	GATATC	1 cut(s)	537
Eco47I	GGWCC	1 cut(s)	916
Eco72I	CACGTG	1 cut(s)	740
EcoRII	CCWGG	3 cut(s)	644, 718, 985
EcoRV	GATATC	1 cut(s)	537
EcoT14I	CCWWGG	2 cut(s)	42, 180
EcoT22I	ATGCAT	1 cut(s)	634
ErhI	CCWWGG	2 cut(s)	42, 180
FaeI	CATG	2 cut(s)	382, 464
FaqI	GGGAC	2 cut(s)	78, 902
FatI	CATG	2 cut(s)	378, 460
FauNDI	CATATG	1 cut(s)	1005
FbaI	TGATCA	2 cut(s)	13, 550
FblI	GTMKAC	1 cut(s)	417
Fnu4HI	GCNGC	7 cut(s)	348, 369, 869, 1001, 1138, 1141, 1144
FokI	GGATG	6 cut(s)	95, 528, 614, 623, 836, 851
Fsp4HI	GCNGC	7 cut(s)	348, 369, 869, 1001, 1138, 1141, 1144
FspBI	CTAG	1 cut(s)	621
GlaI	GCGC	1 cut(s)	165
GluI	GCNGC	7 cut(s)	348, 369, 869, 1001, 1138, 1141, 1144
GsaI	CCCAGC	1 cut(s)	40
GsuI	CTGGAG	2 cut(s)	741, 1152
HaeIII	GGCC	3 cut(s)	179, 220, 831
HapII	CCGG	1 cut(s)	221
HhaI	GCGC	1 cut(s)	166
Hin1I	GRCGYC	1 cut(s)	650
Hin1II	CATG	2 cut(s)	382, 464
Hin6I	GCGC	1 cut(s)	164
HinP1I	GCGC	1 cut(s)	164
HpaII	CCGG	1 cut(s)	221
HphI	GGTGA	1 cut(s)	617
Hpy166II	GTNNAC	4 cut(s)	418, 817, 845, 906
Hpy188I	TCNGA	7 cut(s)	290, 550, 559, 861, 886, 946, 1059
Hpy188III	TCNNGA	1 cut(s)	971
Hpy8I	GTNNAC	4 cut(s)	418, 817, 845, 906
Hpy99I	CGWCG	1 cut(s)	72
HpyAV	CCTTC	1 cut(s)	187
HpyCH4III	ACNGT	4 cut(s)	422, 431, 502, 966
HpyCH4IV	ACGT	5 cut(s)	263, 650, 739, 1011, 1104
HpyF10VI	GCNNNNNNNGC	5 cut(s)	344, 353, 374, 759, 1143
HpyF3I	CTNAG	3 cut(s)	54, 597, 900
HpySE526I	ACGT	5 cut(s)	263, 650, 739, 1011, 1104
Hsp92I	GRCGYC	1 cut(s)	650
Hsp92II	CATG	2 cut(s)	382, 464
HspAI	GCGC	1 cut(s)	164
Ksp22I	TGATCA	2 cut(s)	13, 550
Kzo9I	GATC	4 cut(s)	13, 550, 561, 712
LmnI	GCTCC	4 cut(s)	86, 862, 887, 1015
Lsp1109I	GCAGC	5 cut(s)	334, 355, 880, 1012, 1124
LweI	GCATC	3 cut(s)	334, 506, 1050
MaeI	CTAG	1 cut(s)	621
MaeII	ACGT	5 cut(s)	263, 650, 739, 1011, 1104
MaeIII	GTNAC	6 cut(s)	74, 422, 456, 475, 740, 960
MalI	GATC	4 cut(s)	15, 552, 563, 714
MboI	GATC	4 cut(s)	13, 550, 561, 712
MboII	GAAGA	2 cut(s)	202, 432
MfeI	CAATTG	1 cut(s)	795
MflI	RGATCY	1 cut(s)	561
MluCI	AATT	3 cut(s)	238, 795, 1123
MlyI	GAGTC	4 cut(s)	97, 149, 446, 732
MmeI	TCCRAC	1 cut(s)	1057
Mph1103I	ATGCAT	1 cut(s)	634
MseI	TTAA	3 cut(s)	402, 878, 1049
MslI	CAYNNNNRTG	4 cut(s)	411, 490, 514, 911
MspA1I	CMGCKG	1 cut(s)	232
MspI	CCGG	1 cut(s)	221
MspR9I	CCNGG	3 cut(s)	646, 720, 987
MunI	CAATTG	1 cut(s)	795
MvaI	CCWGG	3 cut(s)	646, 720, 987
MvnI	CGCG	1 cut(s)	166
MwoI	GCNNNNNNNGC	5 cut(s)	344, 353, 374, 759, 1143
NdeI	CATATG	1 cut(s)	1005
NdeII	GATC	4 cut(s)	13, 550, 561, 712
NlaIII	CATG	2 cut(s)	382, 464
NlaIV	GGNNCC	5 cut(s)	88, 388, 690, 918, 1017
NmuCI	GTSAC	4 cut(s)	422, 456, 475, 740
NsiI	ATGCAT	1 cut(s)	634
PfeI	GAWTC	6 cut(s)	172, 226, 524, 578, 614, 947
PflFI	GACNNNGTC	1 cut(s)	106
PflMI	CCANNNNNTGG	1 cut(s)	43
PkrI	GCNGC	7 cut(s)	349, 370, 870, 1002, 1139, 1142, 1145
PleI	GAGTC	4 cut(s)	97, 148, 446, 731
PmaCI	CACGTG	1 cut(s)	740
PmlI	CACGTG	1 cut(s)	740
PpsI	GAGTC	4 cut(s)	97, 148, 446, 731
Ppu21I	YACGTR	1 cut(s)	740
Psp6I	CCWGG	3 cut(s)	644, 718, 985
PspCI	CACGTG	1 cut(s)	740
PspFI	CCCAGC	1 cut(s)	36
PspGI	CCWGG	3 cut(s)	644, 718, 985
PspN4I	GGNNCC	5 cut(s)	88, 388, 690, 918, 1017
PspPI	GGNCC	3 cut(s)	218, 830, 916
PsuI	RGATCY	1 cut(s)	561
PsyI	GACNNNGTC	1 cut(s)	106
RsaI	GTAC	1 cut(s)	325
RsaNI	GTAC	1 cut(s)	324
RseI	CAYNNNNRTG	4 cut(s)	411, 490, 514, 911
SaqAI	TTAA	3 cut(s)	402, 878, 1049
SatI	GCNGC	7 cut(s)	348, 369, 869, 1001, 1138, 1141, 1144
Sau3AI	GATC	4 cut(s)	13, 550, 561, 712
Sau96I	GGNCC	3 cut(s)	218, 830, 916
SchI	GAGTC	4 cut(s)	97, 149, 446, 732
ScrFI	CCNGG	3 cut(s)	646, 720, 987
SfaNI	GCATC	3 cut(s)	334, 506, 1050
SinI	GGWCC	1 cut(s)	916
SmiMI	CAYNNNNRTG	4 cut(s)	411, 490, 514, 911
SpeI	ACTAGT	1 cut(s)	620
Sse9I	AATT	3 cut(s)	238, 795, 1123
SsiI	CCGC	3 cut(s)	232, 1140, 1143
SspMI	CTAG	1 cut(s)	621
StyD4I	CCNGG	3 cut(s)	644, 718, 985
StyI	CCWWGG	2 cut(s)	42, 180
TaaI	ACNGT	4 cut(s)	422, 431, 502, 966
TaiI	ACGT	5 cut(s)	266, 653, 742, 1014, 1107
TaqI	TCGA	3 cut(s)	188, 617, 1116
TasI	AATT	3 cut(s)	238, 795, 1123
TauI	GCSGC	2 cut(s)	1143, 1146
TfiI	GAWTC	6 cut(s)	172, 226, 524, 578, 614, 947
Tru1I	TTAA	3 cut(s)	402, 878, 1049
Tru9I	TTAA	3 cut(s)	402, 878, 1049
TscAI	CASTG	3 cut(s)	97, 397, 1135
TseFI	GTSAC	4 cut(s)	422, 456, 475, 740
TseI	GCWGC	5 cut(s)	347, 368, 868, 1000, 1137
Tsp45I	GTSAC	4 cut(s)	422, 456, 475, 740
TspDTI	ATGAA	5 cut(s)	218, 378, 477, 627, 939
TspGWI	ACGGA	2 cut(s)	923, 1107
TspRI	CASTG	3 cut(s)	97, 397, 1135
Tth111I	GACNNNGTC	1 cut(s)	106
Van91I	CCANNNNNTGG	1 cut(s)	43
VpaK11BI	GGWCC	1 cut(s)	916
XmiI	GTMKAC	1 cut(s)	417
XspI	CTAG	1 cut(s)	621
ZraI	GACGTC	1 cut(s)	651
Zsp2I	ATGCAT	1 cut(s)	634

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.