Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0014804

Physical Location & Seq

Genomic Coordinates Reverse (-)

60978927 .. 60980077

Gene Structure 1151 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G032710.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 996 bp

ATGGGTGCTTATGATCAAGGTTCTAATGGGTTTTCCCAGCCCTTGGGTAGTTCTAAGAAAAGGGGACGACGAAGTAAAAAGGATGGAGCCAGTGTTGTGGAGACTCTGTCAAGGTGGAAAGAATATAACAATCTTTTAGAGTCTGGGATTTACGATGACAAGGCGCGTAAGATTCAGGCCAAGGGGTCGAAGAAGGGTTGTATGAAAGGTAAAGGAGGGCCGGAGAATCAGCGGTGTAATTACAGAGGAGTTAGGCAGAGGACGTGGGGAAAGTGGGTTGCAGAAATCCGAGAGCCGAACAGAGGAAGTAGGCTTTGGTTAGGTACTTTTCCCACGGCTGTTGATGCTGCACTTGCTTATGATGAAGCTGCAAAAGCCATGTATGGTGCCACTGCTCGCCTTAACCACCCCAATGTAAACAGTCACAACAGTTATACATCTTCTTGGAATGACTCGTCACATGAAACTTCGTCAGTCACAACTCCATCAGGGTGTTCTACTGTGGCAACACAAGGATGCTGTGAATCTACTATGATATCAAATCAGTCTGATCACTCCGAGGATGGTGAGGATGAATCGACTAGTCATAATGCATTTACTCAACCCAGTACGTCTAATAGTGCGGCAGATGTAGAAGTGAAAAGTGAGGTTCCTATGGACCACTTCCACACAGATCAACCTGGACAGTTTTCAATTGATGAGCTTTTTGATGTGGACGAGCTTGTCGGTCCTATGGATGGTAAACCCATCCCTGCTCCGAGATTGCAGCAAGATTTAAGCTCTGATGTTGGTCGTCCTCATTACAGTATCCAGAACAAGCCTCCTGGTGGTAATGTGCAGTATATGGACGTGGAGCCATCAGTTGCCGACTACGGTTTTGATTTGTTAAATCGTCAGATGCAAGAGAATAATGTTGGAGTAGATAATCACGGATACTTCAACGTAGATGATTTCGATTTCAATTTCACTGGAGGCGGCGGCGGCAATGCAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0009891 GO:0009893 GO:0010033 GO:0010286 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901363 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

331

Amino Acids

36.15

Weight (kDa)

5.31

Isoelectric Point (pI)

36.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	80 - 129	1.6e-14	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014804)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g25200 FvH4_7g25200
malus_domestica	MD01G1158600.v1.1
prunus_persica	Prupe.2G256900_v2.0.a1
pyrus_communis	pycom01g17530 pycom07g20590
rosa_chinensis	RchiOBHm_Chr1g0371151
rosa_laevigata	RLG00000026982
rosa_multiflora	Rmu_co8262865.1_g000001 Rmu_sc0003714.1_g000001
rosa_roxburghii	Rroxscaffold_4G00285920
rosa_rugosa	Rorug01G0361800
rosa_samantha	Rh1AG371900 Rh1BG335300 Rh1CG348800 Rh1DG366800
rosa_wichuraiana	Rw1G032710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	722
AccB1I	GGYRCC	1 cut(s)	386
AccB7I	CCANNNNNTGG	1 cut(s)	43
AccII	CGCG	1 cut(s)	166
AciI	CCGC	5 cut(s)	232, 623, 975, 978, 981
AfaI	GTAC	2 cut(s)	325, 610
AfiI	CCNNNNNNNGG	4 cut(s)	43, 302, 737, 827
AgsI	TTSAA	3 cut(s)	693, 940, 961
AhlI	ACTAGT	1 cut(s)	581
AjiI	CACGTC	2 cut(s)	264, 850
AjnI	CCWGG	2 cut(s)	679, 823
AjuI	GAANNNNNNNTTGG	2 cut(s)	298, 330
AluBI	AGCT	4 cut(s)	368, 703, 721, 780
AluI	AGCT	4 cut(s)	368, 703, 721, 780
Alw26I	GTCTC	1 cut(s)	95
AoxI	GGCC	2 cut(s)	177, 218
ApeKI	GCWGC	3 cut(s)	347, 368, 766
ArsI	GACNNNNNNTTYG	2 cut(s)	860, 892
AspLEI	GCGC	1 cut(s)	166
AspS9I	GGNCC	3 cut(s)	218, 658, 728
AsuHPI	GGTGA	1 cut(s)	578
AvaII	GGWCC	2 cut(s)	658, 728
BanI	GGYRCC	1 cut(s)	386
BbvI	GCAGC	3 cut(s)	334, 355, 778
BccI	CCATC	6 cut(s)	77, 493, 557, 731, 755, 865
BceAI	ACGGC	1 cut(s)	351
BciT130I	CCWGG	2 cut(s)	681, 825
BciVI	GTATCC	2 cut(s)	818, 926
BclI	TGATCA	2 cut(s)	13, 550
BcoDI	GTCTC	1 cut(s)	95
BcuI	ACTAGT	1 cut(s)	581
BfaI	CTAG	1 cut(s)	582
BfuI	GTATCC	2 cut(s)	818, 926
BisI	GCNGC	7 cut(s)	348, 369, 624, 767, 976, 979, 982
BlsI	GCNGC	7 cut(s)	349, 370, 625, 768, 977, 980, 983
Bme1390I	CCNGG	2 cut(s)	681, 825
Bme18I	GGWCC	2 cut(s)	658, 728
BmgBI	CACGTC	2 cut(s)	264, 850
BmgT120I	GGNCC	3 cut(s)	218, 658, 728
BmiI	GGNNCC	4 cut(s)	88, 388, 651, 855
BmrFI	CCNGG	2 cut(s)	681, 825
BmrI	ACTGGG	1 cut(s)	600
BmsI	GCATC	3 cut(s)	334, 506, 888
BmuI	ACTGGG	1 cut(s)	600
BpmI	CTGGAG	1 cut(s)	990
BsaJI	CCNNGG	4 cut(s)	42, 180, 333, 558
BsaXI	ACNNNNNCTCC	4 cut(s)	78, 92, 108, 122
Bsc4I	CCNNNNNNNGG	4 cut(s)	43, 302, 737, 827
Bse1I	ACTGG	3 cut(s)	90, 606, 973
Bse3DI	GCAATG	1 cut(s)	991
BseBI	CCWGG	2 cut(s)	681, 825
BseDI	CCNNGG	4 cut(s)	42, 180, 333, 558
BseGI	GGATG	6 cut(s)	88, 521, 568, 577, 742, 747
BseLI	CCNNNNNNNGG	4 cut(s)	43, 302, 737, 827
BseMI	GCAATG	1 cut(s)	991
BseNI	ACTGG	3 cut(s)	90, 606, 973
BseRI	GAGGAG	1 cut(s)	261
BseXI	GCAGC	3 cut(s)	334, 355, 778
BseYI	CCCAGC	1 cut(s)	36
BsgI	GTGCAG	2 cut(s)	333, 857
Bsh1236I	CGCG	1 cut(s)	166
BshFI	GGCC	2 cut(s)	179, 220
BshNI	GGYRCC	1 cut(s)	386
BsiSI	CCGG	1 cut(s)	221
BslFI	GGGAC	1 cut(s)	78
BslI	CCNNNNNNNGG	4 cut(s)	43, 302, 737, 827
BsmAI	GTCTC	1 cut(s)	95
BsmFI	GGGAC	1 cut(s)	78
BsnI	GGCC	2 cut(s)	179, 220
Bsp143I	GATC	3 cut(s)	13, 550, 673
BspACI	CCGC	5 cut(s)	232, 623, 975, 978, 981
BspANI	GGCC	2 cut(s)	179, 220
BspFNI	CGCG	1 cut(s)	166
BspLI	GGNNCC	4 cut(s)	88, 388, 651, 855
BspT107I	GGYRCC	1 cut(s)	386
BsrDI	GCAATG	1 cut(s)	991
BsrI	ACTGG	3 cut(s)	90, 606, 973
BssECI	CCNNGG	4 cut(s)	42, 180, 333, 558
BssMI	GATC	3 cut(s)	13, 550, 673
BssT1I	CCWWGG	2 cut(s)	42, 180
Bst2UI	CCWGG	2 cut(s)	681, 825
Bst4CI	ACNGT	6 cut(s)	422, 431, 502, 687, 806, 875
BstC8I	GCNNGC	1 cut(s)	397
BstDEI	CTNAG	1 cut(s)	54
BstDSI	CCRYGG	1 cut(s)	333
BstF5I	GGATG	6 cut(s)	88, 521, 568, 577, 742, 747
BstFNI	CGCG	1 cut(s)	166
BstHHI	GCGC	1 cut(s)	166
BstKTI	GATC	3 cut(s)	16, 553, 676
BstMAI	GTCTC	1 cut(s)	95
BstMBI	GATC	3 cut(s)	13, 550, 673
BstMWI	GCNNNNNNNGC	4 cut(s)	344, 353, 374, 981
BstNI	CCWGG	2 cut(s)	681, 825
BstSCI	CCNGG	2 cut(s)	679, 823
BstUI	CGCG	1 cut(s)	166
BstV1I	GCAGC	3 cut(s)	334, 355, 778
BstXI	CCANNNNNNTGG	1 cut(s)	97
BsuI	GTATCC	2 cut(s)	818, 926
BsuRI	GGCC	2 cut(s)	179, 220
BtgI	CCRYGG	1 cut(s)	333
BtrI	CACGTC	2 cut(s)	264, 850
BtsCI	GGATG	6 cut(s)	88, 521, 568, 577, 742, 747
BtsI	GCAGTG	1 cut(s)	390
BtsIMutI	CAGTG	3 cut(s)	97, 390, 966
Cac8I	GCNNGC	1 cut(s)	397
CfoI	GCGC	1 cut(s)	166
Cfr13I	GGNCC	3 cut(s)	218, 658, 728
Csp6I	GTAC	2 cut(s)	324, 609
CspCI	CAANNNNNGTGG	2 cut(s)	322, 357
CviAII	CATG	2 cut(s)	379, 461
CviQI	GTAC	2 cut(s)	324, 609
DdeI	CTNAG	1 cut(s)	54
DpnI	GATC	3 cut(s)	15, 552, 675
DpnII	GATC	3 cut(s)	13, 550, 673
DrdI	GACNNNNNNGTC	1 cut(s)	722
DseDI	GACNNNNNNGTC	1 cut(s)	722
Eco130I	CCWWGG	2 cut(s)	42, 180
Eco32I	GATATC	1 cut(s)	537
Eco47I	GGWCC	2 cut(s)	658, 728
EcoRII	CCWGG	2 cut(s)	679, 823
EcoRV	GATATC	1 cut(s)	537
EcoT14I	CCWWGG	2 cut(s)	42, 180
EcoT22I	ATGCAT	1 cut(s)	595
ErhI	CCWWGG	2 cut(s)	42, 180
FaeI	CATG	2 cut(s)	382, 464
FaqI	GGGAC	1 cut(s)	78
FatI	CATG	2 cut(s)	378, 460
FbaI	TGATCA	2 cut(s)	13, 550
Fnu4HI	GCNGC	7 cut(s)	348, 369, 624, 767, 976, 979, 982
FokI	GGATG	6 cut(s)	95, 528, 575, 584, 734, 749
Fsp4HI	GCNGC	7 cut(s)	348, 369, 624, 767, 976, 979, 982
FspBI	CTAG	1 cut(s)	582
GlaI	GCGC	1 cut(s)	165
GluI	GCNGC	7 cut(s)	348, 369, 624, 767, 976, 979, 982
GsaI	CCCAGC	1 cut(s)	40
GsuI	CTGGAG	1 cut(s)	990
HaeIII	GGCC	2 cut(s)	179, 220
HapII	CCGG	1 cut(s)	221
HhaI	GCGC	1 cut(s)	166
Hin1II	CATG	2 cut(s)	382, 464
Hin6I	GCGC	1 cut(s)	164
HinP1I	GCGC	1 cut(s)	164
HinfI	GANTC	7 cut(s)	103, 140, 172, 226, 452, 524, 575
HpaII	CCGG	1 cut(s)	221
HphI	GGTGA	1 cut(s)	578
Hpy166II	GTNNAC	3 cut(s)	418, 715, 743
Hpy188I	TCNGA	6 cut(s)	290, 550, 559, 759, 784, 897
Hpy188III	TCNNGA	1 cut(s)	811
Hpy8I	GTNNAC	3 cut(s)	418, 715, 743
Hpy99I	CGWCG	1 cut(s)	72
HpyAV	CCTTC	1 cut(s)	187
HpyCH4III	ACNGT	6 cut(s)	422, 431, 502, 687, 806, 875
HpyCH4IV	ACGT	4 cut(s)	263, 611, 849, 942
HpyCH4V	TGCA	8 cut(s)	281, 350, 371, 593, 766, 838, 901, 989
HpyF10VI	GCNNNNNNNGC	4 cut(s)	344, 353, 374, 981
HpyF3I	CTNAG	1 cut(s)	54
HpySE526I	ACGT	4 cut(s)	263, 611, 849, 942
Hsp92II	CATG	2 cut(s)	382, 464
HspAI	GCGC	1 cut(s)	164
Ksp22I	TGATCA	2 cut(s)	13, 550
Kzo9I	GATC	3 cut(s)	13, 550, 673
LmnI	GCTCC	3 cut(s)	86, 760, 853
Lsp1109I	GCAGC	3 cut(s)	334, 355, 778
LweI	GCATC	3 cut(s)	334, 506, 888
MaeI	CTAG	1 cut(s)	582
MaeII	ACGT	4 cut(s)	263, 611, 849, 942
MaeIII	GTNAC	3 cut(s)	422, 456, 475
MalI	GATC	3 cut(s)	15, 552, 675
MboI	GATC	3 cut(s)	13, 550, 673
MboII	GAAGA	2 cut(s)	202, 432
MfeI	CAATTG	1 cut(s)	693
MluCI	AATT	3 cut(s)	238, 693, 961
MlyI	GAGTC	3 cut(s)	97, 149, 446
MmeI	TCCRAC	1 cut(s)	895
Mph1103I	ATGCAT	1 cut(s)	595
MseI	TTAA	3 cut(s)	402, 776, 887
MslI	CAYNNNNRTG	3 cut(s)	411, 490, 514
MspA1I	CMGCKG	1 cut(s)	232
MspI	CCGG	1 cut(s)	221
MspR9I	CCNGG	2 cut(s)	681, 825
MunI	CAATTG	1 cut(s)	693
MvaI	CCWGG	2 cut(s)	681, 825
MvnI	CGCG	1 cut(s)	166
MwoI	GCNNNNNNNGC	4 cut(s)	344, 353, 374, 981
NdeII	GATC	3 cut(s)	13, 550, 673
NlaIII	CATG	2 cut(s)	382, 464
NlaIV	GGNNCC	4 cut(s)	88, 388, 651, 855
NmuCI	GTSAC	3 cut(s)	422, 456, 475
NsiI	ATGCAT	1 cut(s)	595
PfeI	GAWTC	4 cut(s)	172, 226, 524, 575
PflFI	GACNNNGTC	1 cut(s)	106
PflMI	CCANNNNNTGG	1 cut(s)	43
PkrI	GCNGC	7 cut(s)	349, 370, 625, 768, 977, 980, 983
PleI	GAGTC	3 cut(s)	97, 148, 446
PpsI	GAGTC	3 cut(s)	97, 148, 446
Psp6I	CCWGG	2 cut(s)	679, 823
PspFI	CCCAGC	1 cut(s)	36
PspGI	CCWGG	2 cut(s)	679, 823
PspN4I	GGNNCC	4 cut(s)	88, 388, 651, 855
PspPI	GGNCC	3 cut(s)	218, 658, 728
PsyI	GACNNNGTC	1 cut(s)	106
RsaI	GTAC	2 cut(s)	325, 610
RsaNI	GTAC	2 cut(s)	324, 609
RseI	CAYNNNNRTG	3 cut(s)	411, 490, 514
SaqAI	TTAA	3 cut(s)	402, 776, 887
SatI	GCNGC	7 cut(s)	348, 369, 624, 767, 976, 979, 982
Sau3AI	GATC	3 cut(s)	13, 550, 673
Sau96I	GGNCC	3 cut(s)	218, 658, 728
SchI	GAGTC	3 cut(s)	97, 149, 446
ScrFI	CCNGG	2 cut(s)	681, 825
SfaNI	GCATC	3 cut(s)	334, 506, 888
SinI	GGWCC	2 cut(s)	658, 728
SmiMI	CAYNNNNRTG	3 cut(s)	411, 490, 514
SpeI	ACTAGT	1 cut(s)	581
Sse9I	AATT	3 cut(s)	238, 693, 961
SsiI	CCGC	5 cut(s)	232, 623, 975, 978, 981
SspMI	CTAG	1 cut(s)	582
StyD4I	CCNGG	2 cut(s)	679, 823
StyI	CCWWGG	2 cut(s)	42, 180
TaaI	ACNGT	6 cut(s)	422, 431, 502, 687, 806, 875
TaiI	ACGT	4 cut(s)	266, 614, 852, 945
TaqI	TCGA	3 cut(s)	188, 578, 954
TaqII	GACCGA	1 cut(s)	716
TasI	AATT	3 cut(s)	238, 693, 961
TauI	GCSGC	4 cut(s)	626, 978, 981, 984
TfiI	GAWTC	4 cut(s)	172, 226, 524, 575
Tru1I	TTAA	3 cut(s)	402, 776, 887
Tru9I	TTAA	3 cut(s)	402, 776, 887
TscAI	CASTG	3 cut(s)	97, 397, 973
TseFI	GTSAC	3 cut(s)	422, 456, 475
TseI	GCWGC	3 cut(s)	347, 368, 766
Tsp45I	GTSAC	3 cut(s)	422, 456, 475
TspDTI	ATGAA	4 cut(s)	218, 378, 477, 588
TspGWI	ACGGA	1 cut(s)	945
TspRI	CASTG	3 cut(s)	97, 397, 973
Tth111I	GACNNNGTC	1 cut(s)	106
Van91I	CCANNNNNTGG	1 cut(s)	43
VpaK11BI	GGWCC	2 cut(s)	658, 728
XspI	CTAG	1 cut(s)	582
Zsp2I	ATGCAT	1 cut(s)	595

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.