Rh1AG371900

Dehydration-responsive element-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0014804
Physical Location & Seq
Reverse (-)
60571263 .. 60573561
2299 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG371900.1

Sequence Viewer

Length: 1155 bp
ATGGGTGCTTATGATCAAGGTTCTAATGGGTTTTCCCAGCCCTTGGGTAGTTCTAAGAAAATGGGACGACGAAGTAAAAAGGATGGAGCCAGTGTTGTGGAGACTCTGTCAAGGTGGAAAGAATATAACAATCTTTTAGAGTCTGGGATTTACGATAACAAGGCGCGTAAGATTCAGGCCAAGGGGTCGAAGAAGGGTTGTATGAAAGGTAAAGGAGGGCCGGAGAATCAGCGGTGTAATTACAGAGGAGTTAGGCAGAGGACGTGGGGAAAGTGGGTTGCAGAAATCCGAGAGCCGAACAGAGGAAGTAGGCTTTGGTTAGGTACTTTTCCCACGGCTGTTGATGCTGCACTTGCTTATGATGAAGCTGCAAAAGCCATGTATGGTGCCACTGCTCGCCTTAACCACCCTAATGTAAACAGTCACAACAGTTATACATCTTCTTGGAATGACTCGTCACATGAAACTTCGTCAGTCACAACTCCATCAGGGTGTTCTACTGTGGCAACACAAGGATGCTGTGAATCTACTATGATATCAAATCAGTCTGATCACTCCGAGGTCTGTGCAGAGGAGGAATCTTTTATGGTGAAAACTGAGGATGGTGAGGATGAATCGACTAGTCATAATGCATTTACTCAACCCAGTACGTCTAATGCTACGGCAGATGTAGAAGTGAAAAGTGAGGTTCCTATGGACCACTTCCACACAGATCAACCTGGAGTCCAAGAGCAGGCACATGACTGGATTAGCACAGATGGCTTTGATATGGATTACTTGAAGCAGTTTTCAATTGATGAGCTTTTTGATGTGGAAGAGCTTGTCGGCCCTATGGATGGTAAACCCATCCCTGCTCCGAGATTGCAGCAAGATTTAAGCTCTGATGTTGGTCGTCCTCAGTTCACGGATATGGTCCCTGTTGATAATAATGCCACACTATCGGATTCATCATACCAGTTACAGTATCCAGATAACAAGCCTCCTGGTGGTAATGTGCAGTATATGGACGTGGAGCCATCAGTTGCCGACTACGGTTTTGATTTGTTAAATCGTCAGATGCAAGAGAATAATGTTGGAGTTGATAATCACGGATACTTCAACGTAGATGATTTCGATTTCAATTTCACTGGAGGCGGCGGCGGCAATGCAAACTGA

Protein Analysis

384

Amino Acids

42.22

Weight (kDa)

4.75

Isoelectric Point (pI)

41.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 80 - 129 2e-14 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014804)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g25200 FvH4_7g25200
malus_domestica MD01G1158600.v1.1
prunus_persica Prupe.2G256900_v2.0.a1
pyrus_communis pycom01g17530 pycom07g20590
rosa_chinensis RchiOBHm_Chr1g0371151
rosa_laevigata RLG00000026982
rosa_multiflora Rmu_co8262865.1_g000001 Rmu_sc0003714.1_g000001
rosa_roxburghii Rroxscaffold_4G00285920
rosa_rugosa Rorug01G0361800
rosa_samantha Rh1AG371900 Rh1BG335300 Rh1CG348800 Rh1DG366800
rosa_wichuraiana Rw1G032710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 386
AccB7I CCANNNNNTGG 1 cut(s) 43
AccII CGCG 1 cut(s) 166
AciI CCGC 4 cut(s) 232, 1134, 1137, 1140
AfaI GTAC 2 cut(s) 325, 649
AfiI CCNNNNNNNGG 5 cut(s) 43, 302, 733, 836, 986
AgsI TTSAA 4 cut(s) 781, 792, 1099, 1120
AhlI ACTAGT 1 cut(s) 620
AjiI CACGTC 2 cut(s) 264, 1009
AjnI CCWGG 2 cut(s) 718, 982
AjuI GAANNNNNNNTTGG 2 cut(s) 298, 330
AluBI AGCT 4 cut(s) 368, 802, 820, 879
AluI AGCT 4 cut(s) 368, 802, 820, 879
Alw26I GTCTC 1 cut(s) 95
AoxI GGCC 3 cut(s) 177, 218, 826
ApeKI GCWGC 3 cut(s) 347, 368, 865
ArsI GACNNNNNNTTYG 2 cut(s) 1019, 1051
AspLEI GCGC 1 cut(s) 166
AspS9I GGNCC 4 cut(s) 218, 697, 827, 913
AsuHPI GGTGA 2 cut(s) 601, 617
AvaII GGWCC 2 cut(s) 697, 913
BanI GGYRCC 1 cut(s) 386
BbvI GCAGC 3 cut(s) 334, 355, 877
BccI CCATC 7 cut(s) 77, 493, 596, 752, 830, 854, 1024
BceAI ACGGC 2 cut(s) 351, 678
BcgI CGANNNNNNTGC 2 cut(s) 548, 582
BciT130I CCWGG 2 cut(s) 720, 984
BciVI GTATCC 2 cut(s) 975, 1085
BclI TGATCA 2 cut(s) 13, 550
BcoDI GTCTC 1 cut(s) 95
BcuI ACTAGT 1 cut(s) 620
BfaI CTAG 1 cut(s) 621
BfuI GTATCC 2 cut(s) 975, 1085
BisI GCNGC 6 cut(s) 348, 369, 866, 1135, 1138, 1141
BlsI GCNGC 6 cut(s) 349, 370, 867, 1136, 1139, 1142
Bme1390I CCNGG 2 cut(s) 720, 984
Bme18I GGWCC 2 cut(s) 697, 913
BmgBI CACGTC 2 cut(s) 264, 1009
BmgT120I GGNCC 4 cut(s) 218, 697, 827, 913
BmiI GGNNCC 5 cut(s) 88, 388, 690, 915, 1014
BmrFI CCNGG 2 cut(s) 720, 984
BmrI ACTGGG 1 cut(s) 639
BmsI GCATC 3 cut(s) 334, 506, 1047
BmuI ACTGGG 1 cut(s) 639
BpmI CTGGAG 2 cut(s) 741, 1149
BsaJI CCNNGG 4 cut(s) 42, 180, 333, 558
BsaXI ACNNNNNCTCC 4 cut(s) 78, 92, 108, 122
Bsc4I CCNNNNNNNGG 5 cut(s) 43, 302, 733, 836, 986
Bse1I ACTGG 5 cut(s) 90, 645, 749, 955, 1132
Bse3DI GCAATG 1 cut(s) 1150
BseBI CCWGG 2 cut(s) 720, 984
BseDI CCNNGG 4 cut(s) 42, 180, 333, 558
BseGI GGATG 6 cut(s) 88, 521, 607, 616, 841, 846
BseLI CCNNNNNNNGG 5 cut(s) 43, 302, 733, 836, 986
BseMI GCAATG 1 cut(s) 1150
BseMII CTCAG 2 cut(s) 588, 911
BseNI ACTGG 5 cut(s) 90, 645, 749, 955, 1132
BseRI GAGGAG 2 cut(s) 261, 587
BseXI GCAGC 3 cut(s) 334, 355, 877
BseYI CCCAGC 1 cut(s) 36
BsgI GTGCAG 3 cut(s) 333, 588, 1016
Bsh1236I CGCG 1 cut(s) 166
BshFI GGCC 3 cut(s) 179, 220, 828
BshNI GGYRCC 1 cut(s) 386
BsiSI CCGG 1 cut(s) 221
BslFI GGGAC 2 cut(s) 78, 899
BslI CCNNNNNNNGG 5 cut(s) 43, 302, 733, 836, 986
BsmAI GTCTC 1 cut(s) 95
BsmFI GGGAC 2 cut(s) 78, 899
BsnI GGCC 3 cut(s) 179, 220, 828
Bsp143I GATC 3 cut(s) 13, 550, 712
BspACI CCGC 4 cut(s) 232, 1134, 1137, 1140
BspANI GGCC 3 cut(s) 179, 220, 828
BspCNI CTCAG 2 cut(s) 589, 910
BspFNI CGCG 1 cut(s) 166
BspLI GGNNCC 5 cut(s) 88, 388, 690, 915, 1014
BspQI GCTCTTC 1 cut(s) 810
BspT107I GGYRCC 1 cut(s) 386
BsrDI GCAATG 1 cut(s) 1150
BsrI ACTGG 5 cut(s) 90, 645, 749, 955, 1132
BssECI CCNNGG 4 cut(s) 42, 180, 333, 558
BssMI GATC 3 cut(s) 13, 550, 712
BssT1I CCWWGG 2 cut(s) 42, 180
Bst2UI CCWGG 2 cut(s) 720, 984
Bst4CI ACNGT 5 cut(s) 422, 431, 502, 963, 1034
Bst6I CTCTTC 1 cut(s) 810
BstC8I GCNNGC 2 cut(s) 397, 735
BstDEI CTNAG 3 cut(s) 54, 597, 897
BstDSI CCRYGG 1 cut(s) 333
BstF5I GGATG 6 cut(s) 88, 521, 607, 616, 841, 846
BstFNI CGCG 1 cut(s) 166
BstHHI GCGC 1 cut(s) 166
BstKTI GATC 3 cut(s) 16, 553, 715
BstMAI GTCTC 1 cut(s) 95
BstMBI GATC 3 cut(s) 13, 550, 712
BstMWI GCNNNNNNNGC 5 cut(s) 344, 353, 374, 759, 1140
BstNI CCWGG 2 cut(s) 720, 984
BstSCI CCNGG 2 cut(s) 718, 982
BstUI CGCG 1 cut(s) 166
BstV1I GCAGC 3 cut(s) 334, 355, 877
BstXI CCANNNNNNTGG 1 cut(s) 97
BsuI GTATCC 2 cut(s) 975, 1085
BsuRI GGCC 3 cut(s) 179, 220, 828
BtgI CCRYGG 1 cut(s) 333
BtrI CACGTC 2 cut(s) 264, 1009
BtsCI GGATG 6 cut(s) 88, 521, 607, 616, 841, 846
BtsI GCAGTG 1 cut(s) 390
BtsIMutI CAGTG 3 cut(s) 97, 390, 1125
Cac8I GCNNGC 2 cut(s) 397, 735
CfoI GCGC 1 cut(s) 166
Cfr13I GGNCC 4 cut(s) 218, 697, 827, 913
Csp6I GTAC 2 cut(s) 324, 648
CspCI CAANNNNNGTGG 2 cut(s) 322, 357
CviAII CATG 3 cut(s) 379, 461, 740
CviQI GTAC 2 cut(s) 324, 648
DdeI CTNAG 3 cut(s) 54, 597, 897
DpnI GATC 3 cut(s) 15, 552, 714
DpnII GATC 3 cut(s) 13, 550, 712
Eam1104I CTCTTC 1 cut(s) 810
EarI CTCTTC 1 cut(s) 810
Eco130I CCWWGG 2 cut(s) 42, 180
Eco32I GATATC 1 cut(s) 537
Eco47I GGWCC 2 cut(s) 697, 913
EcoRII CCWGG 2 cut(s) 718, 982
EcoRV GATATC 1 cut(s) 537
EcoT14I CCWWGG 2 cut(s) 42, 180
EcoT22I ATGCAT 1 cut(s) 634
ErhI CCWWGG 2 cut(s) 42, 180
FaeI CATG 3 cut(s) 382, 464, 743
FaqI GGGAC 2 cut(s) 78, 899
FatI CATG 3 cut(s) 378, 460, 739
FbaI TGATCA 2 cut(s) 13, 550
Fnu4HI GCNGC 6 cut(s) 348, 369, 866, 1135, 1138, 1141
FokI GGATG 6 cut(s) 95, 528, 614, 623, 833, 848
Fsp4HI GCNGC 6 cut(s) 348, 369, 866, 1135, 1138, 1141
FspBI CTAG 1 cut(s) 621
GlaI GCGC 1 cut(s) 165
GluI GCNGC 6 cut(s) 348, 369, 866, 1135, 1138, 1141
GsaI CCCAGC 1 cut(s) 40
GsuI CTGGAG 2 cut(s) 741, 1149
HaeIII GGCC 3 cut(s) 179, 220, 828
HapII CCGG 1 cut(s) 221
HhaI GCGC 1 cut(s) 166
Hin1II CATG 3 cut(s) 382, 464, 743
Hin6I GCGC 1 cut(s) 164
HinP1I GCGC 1 cut(s) 164
HpaII CCGG 1 cut(s) 221
HphI GGTGA 2 cut(s) 601, 617
Hpy166II GTNNAC 3 cut(s) 418, 842, 903
Hpy188I TCNGA 7 cut(s) 290, 550, 559, 858, 883, 943, 1056
Hpy188III TCNNGA 1 cut(s) 968
Hpy8I GTNNAC 3 cut(s) 418, 842, 903
Hpy99I CGWCG 1 cut(s) 72
HpyAV CCTTC 1 cut(s) 187
HpyCH4III ACNGT 5 cut(s) 422, 431, 502, 963, 1034
HpyCH4IV ACGT 4 cut(s) 263, 650, 1008, 1101
HpyCH4V TGCA 9 cut(s) 281, 350, 371, 569, 632, 865, 997, 1060, 1148
HpyF10VI GCNNNNNNNGC 5 cut(s) 344, 353, 374, 759, 1140
HpyF3I CTNAG 3 cut(s) 54, 597, 897
HpySE526I ACGT 4 cut(s) 263, 650, 1008, 1101
Hsp92II CATG 3 cut(s) 382, 464, 743
HspAI GCGC 1 cut(s) 164
Ksp22I TGATCA 2 cut(s) 13, 550
Kzo9I GATC 3 cut(s) 13, 550, 712
LguI GCTCTTC 1 cut(s) 810
LmnI GCTCC 3 cut(s) 86, 859, 1012
Lsp1109I GCAGC 3 cut(s) 334, 355, 877
LweI GCATC 3 cut(s) 334, 506, 1047
MaeI CTAG 1 cut(s) 621
MaeII ACGT 4 cut(s) 263, 650, 1008, 1101
MaeIII GTNAC 4 cut(s) 422, 456, 475, 957
MalI GATC 3 cut(s) 15, 552, 714
MboI GATC 3 cut(s) 13, 550, 712
MboII GAAGA 3 cut(s) 202, 432, 827
MfeI CAATTG 1 cut(s) 792
MluCI AATT 3 cut(s) 238, 792, 1120
MlyI GAGTC 4 cut(s) 97, 149, 446, 732
MmeI TCCRAC 1 cut(s) 1054
Mph1103I ATGCAT 1 cut(s) 634
MseI TTAA 3 cut(s) 402, 875, 1046
MslI CAYNNNNRTG 4 cut(s) 411, 490, 514, 908
MspA1I CMGCKG 1 cut(s) 232
MspI CCGG 1 cut(s) 221
MspR9I CCNGG 2 cut(s) 720, 984
MunI CAATTG 1 cut(s) 792
MvaI CCWGG 2 cut(s) 720, 984
MvnI CGCG 1 cut(s) 166
MwoI GCNNNNNNNGC 5 cut(s) 344, 353, 374, 759, 1140
NdeII GATC 3 cut(s) 13, 550, 712
NlaIII CATG 3 cut(s) 382, 464, 743
NlaIV GGNNCC 5 cut(s) 88, 388, 690, 915, 1014
NmuCI GTSAC 3 cut(s) 422, 456, 475
NsiI ATGCAT 1 cut(s) 634
PciSI GCTCTTC 1 cut(s) 810
PfeI GAWTC 6 cut(s) 172, 226, 524, 578, 614, 944
PflFI GACNNNGTC 1 cut(s) 106
PflMI CCANNNNNTGG 1 cut(s) 43
PkrI GCNGC 6 cut(s) 349, 370, 867, 1136, 1139, 1142
PleI GAGTC 4 cut(s) 97, 148, 446, 731
PpsI GAGTC 4 cut(s) 97, 148, 446, 731
Psp6I CCWGG 2 cut(s) 718, 982
PspFI CCCAGC 1 cut(s) 36
PspGI CCWGG 2 cut(s) 718, 982
PspN4I GGNNCC 5 cut(s) 88, 388, 690, 915, 1014
PspPI GGNCC 4 cut(s) 218, 697, 827, 913
PsyI GACNNNGTC 1 cut(s) 106
RsaI GTAC 2 cut(s) 325, 649
RsaNI GTAC 2 cut(s) 324, 648
RseI CAYNNNNRTG 4 cut(s) 411, 490, 514, 908
SapI GCTCTTC 1 cut(s) 810
SaqAI TTAA 3 cut(s) 402, 875, 1046
SatI GCNGC 6 cut(s) 348, 369, 866, 1135, 1138, 1141
Sau3AI GATC 3 cut(s) 13, 550, 712
Sau96I GGNCC 4 cut(s) 218, 697, 827, 913
SchI GAGTC 4 cut(s) 97, 149, 446, 732
ScrFI CCNGG 2 cut(s) 720, 984
SfaNI GCATC 3 cut(s) 334, 506, 1047
SinI GGWCC 2 cut(s) 697, 913
SmiMI CAYNNNNRTG 4 cut(s) 411, 490, 514, 908
SpeI ACTAGT 1 cut(s) 620
Sse9I AATT 3 cut(s) 238, 792, 1120
SsiI CCGC 4 cut(s) 232, 1134, 1137, 1140
SspMI CTAG 1 cut(s) 621
StyD4I CCNGG 2 cut(s) 718, 982
StyI CCWWGG 2 cut(s) 42, 180
TaaI ACNGT 5 cut(s) 422, 431, 502, 963, 1034
TaiI ACGT 4 cut(s) 266, 653, 1011, 1104
TaqI TCGA 3 cut(s) 188, 617, 1113
TasI AATT 3 cut(s) 238, 792, 1120
TauI GCSGC 3 cut(s) 1137, 1140, 1143
TfiI GAWTC 6 cut(s) 172, 226, 524, 578, 614, 944
Tru1I TTAA 3 cut(s) 402, 875, 1046
Tru9I TTAA 3 cut(s) 402, 875, 1046
TscAI CASTG 3 cut(s) 97, 397, 1132
TseFI GTSAC 3 cut(s) 422, 456, 475
TseI GCWGC 3 cut(s) 347, 368, 865
Tsp45I GTSAC 3 cut(s) 422, 456, 475
TspDTI ATGAA 5 cut(s) 218, 378, 477, 627, 936
TspGWI ACGGA 2 cut(s) 920, 1104
TspRI CASTG 3 cut(s) 97, 397, 1132
Tth111I GACNNNGTC 1 cut(s) 106
Van91I CCANNNNNTGG 1 cut(s) 43
VpaK11BI GGWCC 2 cut(s) 697, 913
XspI CTAG 1 cut(s) 621
Zsp2I ATGCAT 1 cut(s) 634
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.