Rh1CG348800

Dehydration-responsive element-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0014804
Physical Location & Seq
Reverse (-)
62598986 .. 62600146
1161 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG348800.1

Sequence Viewer

Length: 1161 bp
ATGGGTGCTTATGATCAAGGTTCTAATGGGTTTTCCCAGCCCTTGGGTAGTTCTAAGAAAAGGGGCCGTCGAAGTAAAAAGGATGGAGCCAGTGTTGAGGAGACTCTGTCAAGGTGGAAAGAATATAACAAGCTTTTAGAGTCTGGGATTTACGATGACAAGGCGCGTAAGATTCAGGCCAAGGGGTCGAAGAAGGGTTGTATGAAAGGTAAAGGAGGGCCGGAGAATCAGCGGTGTAATTACAGAGGAGTTAGGCAGAGGACGTGGGGAAAGTGGGTTGCAGAAATCCGAGAGCCGAACAGAGGAAGTAGGCTTTGGTTAGGTACTTTTCCCACGGCTGTTGATGCTGCACTTGCTTATGATCAAGCTGCAAAAGCCATGTATGGTGCCACTGCTCGCCTTAATAACCCTAATGTAAACAATCACAACAGTTATACATCTTCTTGGAATGAATCGTCACATGAAACTTCGTCAGTCACAACTCCATCAGGGTGTTCTACTGTGGCAACACAAGGATGCTGTGAATCTACTATGATATCAAATCGGTCTGATCACTCCGAGGTCTGTGCAGAGGAGGAATCTTTTATGGTGAAAACTGAGGATGGTGAGGATGAATCGACCAGTCATGCTTGGCCTAATGCATTTACTCAACCCAGTGCGTCTAATGCTACGGCAGATGTAGAGGTGAAAAGTGAGGTTCCTATGGACCACTTCCACACAGATCAACCTGGAGTCCAAGAGCAGGCACATGACTGGATTAGCACAGATGGCTTTGATATGGATTACTTGAAGCAGTTTTCAATTGATGAGCTTTTTTATGTGGACGAGCTTGTCGGTCCTATGGATGGTAAACCCATCCCTGCTCCGAGATTGCAGCAAGATTCAAGCTCTGATGTTGGTCGTCCTCAGTTCACAGATATGGTCCCTGTTGATAATGCCACACTATCGGATTCATCATACCAGTTACAGTATCCAGATGACAAGCCTCCTGGTGGTAATGTGCAGCATATGGACGTGGAACCATCAGTTGCCGACTATGGCTTTGATTTGTTAAATCGTCAGATGCAAGAGAATAATGTTGGAGTAGATAATCACGGATACTTCAATGTAGATGATTTCGATTTCAATTTCACTGGAGGCGGCGGCAGCAATGCAAACTGA

Protein Analysis

386

Amino Acids

42.56

Weight (kDa)

4.84

Isoelectric Point (pI)

39.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 80 - 129 1.6e-14 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014804)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g25200 FvH4_7g25200
malus_domestica MD01G1158600.v1.1
prunus_persica Prupe.2G256900_v2.0.a1
pyrus_communis pycom01g17530 pycom07g20590
rosa_chinensis RchiOBHm_Chr1g0371151
rosa_laevigata RLG00000026982
rosa_multiflora Rmu_co8262865.1_g000001 Rmu_sc0003714.1_g000001
rosa_roxburghii Rroxscaffold_4G00285920
rosa_rugosa Rorug01G0361800
rosa_samantha Rh1AG371900 Rh1BG335300 Rh1CG348800 Rh1DG366800
rosa_wichuraiana Rw1G032710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 830
AccB1I GGYRCC 1 cut(s) 386
AccB7I CCANNNNNTGG 1 cut(s) 43
AccII CGCG 1 cut(s) 166
AciI CCGC 3 cut(s) 232, 1140, 1143
AfaI GTAC 1 cut(s) 325
AfiI CCNNNNNNNGG 5 cut(s) 43, 302, 742, 845, 992
AgsI TTSAA 5 cut(s) 790, 801, 885, 1105, 1126
AjiI CACGTC 2 cut(s) 264, 1015
AjnI CCWGG 2 cut(s) 727, 988
AjuI GAANNNNNNNTTGG 2 cut(s) 298, 330
AluBI AGCT 5 cut(s) 133, 368, 811, 829, 888
AluI AGCT 5 cut(s) 133, 368, 811, 829, 888
Alw26I GTCTC 1 cut(s) 95
AoxI GGCC 4 cut(s) 64, 177, 218, 632
ApeKI GCWGC 5 cut(s) 347, 368, 874, 1003, 1146
ArsI GACNNNNNNTTYG 2 cut(s) 1025, 1057
AspLEI GCGC 1 cut(s) 166
AspS9I GGNCC 5 cut(s) 64, 218, 706, 836, 922
AsuHPI GGTGA 3 cut(s) 601, 617, 697
AvaII GGWCC 3 cut(s) 706, 836, 922
BanI GGYRCC 1 cut(s) 386
BbvI GCAGC 4 cut(s) 334, 355, 886, 1015
BccI CCATC 7 cut(s) 77, 493, 596, 761, 839, 863, 1030
BceAI ACGGC 3 cut(s) 51, 351, 687
BcgI CGANNNNNNTGC 2 cut(s) 548, 582
BciT130I CCWGG 2 cut(s) 729, 990
BciVI GTATCC 2 cut(s) 981, 1091
BclI TGATCA 3 cut(s) 13, 361, 550
BcoDI GTCTC 1 cut(s) 95
BfuI GTATCC 2 cut(s) 981, 1091
BisI GCNGC 7 cut(s) 348, 369, 875, 1004, 1141, 1144, 1147
BlsI GCNGC 7 cut(s) 349, 370, 876, 1005, 1142, 1145, 1148
Bme1390I CCNGG 2 cut(s) 729, 990
Bme18I GGWCC 3 cut(s) 706, 836, 922
BmgBI CACGTC 2 cut(s) 264, 1015
BmgT120I GGNCC 5 cut(s) 64, 218, 706, 836, 922
BmiI GGNNCC 6 cut(s) 65, 88, 388, 699, 924, 1020
BmrFI CCNGG 2 cut(s) 729, 990
BmrI ACTGGG 1 cut(s) 648
BmsI GCATC 3 cut(s) 334, 506, 1053
BmuI ACTGGG 1 cut(s) 648
BpmI CTGGAG 2 cut(s) 750, 1155
BsaJI CCNNGG 4 cut(s) 42, 180, 333, 558
BsaXI ACNNNNNCTCC 4 cut(s) 78, 92, 108, 122
Bsc4I CCNNNNNNNGG 5 cut(s) 43, 302, 742, 845, 992
Bse1I ACTGG 6 cut(s) 90, 621, 654, 758, 961, 1138
Bse3DI GCAATG 1 cut(s) 1156
BseBI CCWGG 2 cut(s) 729, 990
BseDI CCNNGG 4 cut(s) 42, 180, 333, 558
BseGI GGATG 6 cut(s) 88, 521, 607, 616, 850, 855
BseLI CCNNNNNNNGG 5 cut(s) 43, 302, 742, 845, 992
BseMI GCAATG 1 cut(s) 1156
BseMII CTCAG 2 cut(s) 588, 920
BseNI ACTGG 6 cut(s) 90, 621, 654, 758, 961, 1138
BseRI GAGGAG 3 cut(s) 113, 261, 587
BseXI GCAGC 4 cut(s) 334, 355, 886, 1015
BseYI CCCAGC 1 cut(s) 36
BsgI GTGCAG 3 cut(s) 333, 588, 1022
Bsh1236I CGCG 1 cut(s) 166
BshFI GGCC 4 cut(s) 66, 179, 220, 634
BshNI GGYRCC 1 cut(s) 386
BsiSI CCGG 1 cut(s) 221
BslFI GGGAC 1 cut(s) 908
BslI CCNNNNNNNGG 5 cut(s) 43, 302, 742, 845, 992
BsmAI GTCTC 1 cut(s) 95
BsmFI GGGAC 1 cut(s) 908
BsnI GGCC 4 cut(s) 66, 179, 220, 634
Bsp143I GATC 4 cut(s) 13, 361, 550, 721
BspACI CCGC 3 cut(s) 232, 1140, 1143
BspANI GGCC 4 cut(s) 66, 179, 220, 634
BspCNI CTCAG 2 cut(s) 589, 919
BspFNI CGCG 1 cut(s) 166
BspLI GGNNCC 6 cut(s) 65, 88, 388, 699, 924, 1020
BspT107I GGYRCC 1 cut(s) 386
BsrDI GCAATG 1 cut(s) 1156
BsrI ACTGG 6 cut(s) 90, 621, 654, 758, 961, 1138
BssECI CCNNGG 4 cut(s) 42, 180, 333, 558
BssMI GATC 4 cut(s) 13, 361, 550, 721
BssT1I CCWWGG 2 cut(s) 42, 180
Bst2UI CCWGG 2 cut(s) 729, 990
Bst4CI ACNGT 3 cut(s) 431, 502, 969
BstC8I GCNNGC 2 cut(s) 397, 744
BstDEI CTNAG 3 cut(s) 54, 597, 906
BstDSI CCRYGG 1 cut(s) 333
BstF5I GGATG 6 cut(s) 88, 521, 607, 616, 850, 855
BstFNI CGCG 1 cut(s) 166
BstHHI GCGC 1 cut(s) 166
BstKTI GATC 4 cut(s) 16, 364, 553, 724
BstMAI GTCTC 1 cut(s) 95
BstMBI GATC 4 cut(s) 13, 361, 550, 721
BstMWI GCNNNNNNNGC 6 cut(s) 344, 353, 374, 665, 768, 1146
BstNI CCWGG 2 cut(s) 729, 990
BstSCI CCNGG 2 cut(s) 727, 988
BstUI CGCG 1 cut(s) 166
BstV1I GCAGC 4 cut(s) 334, 355, 886, 1015
BsuI GTATCC 2 cut(s) 981, 1091
BsuRI GGCC 4 cut(s) 66, 179, 220, 634
BtgI CCRYGG 1 cut(s) 333
BtrI CACGTC 2 cut(s) 264, 1015
BtsCI GGATG 6 cut(s) 88, 521, 607, 616, 850, 855
BtsI GCAGTG 1 cut(s) 390
BtsIMutI CAGTG 4 cut(s) 97, 390, 661, 1131
Cac8I GCNNGC 2 cut(s) 397, 744
CfoI GCGC 1 cut(s) 166
Cfr13I GGNCC 5 cut(s) 64, 218, 706, 836, 922
CseI GACGC 1 cut(s) 648
Csp6I GTAC 1 cut(s) 324
CspCI CAANNNNNGTGG 2 cut(s) 322, 357
CviAII CATG 4 cut(s) 379, 461, 626, 749
CviQI GTAC 1 cut(s) 324
DdeI CTNAG 3 cut(s) 54, 597, 906
DpnI GATC 4 cut(s) 15, 363, 552, 723
DpnII GATC 4 cut(s) 13, 361, 550, 721
DrdI GACNNNNNNGTC 1 cut(s) 830
DseDI GACNNNNNNGTC 1 cut(s) 830
Eco130I CCWWGG 2 cut(s) 42, 180
Eco32I GATATC 1 cut(s) 537
Eco47I GGWCC 3 cut(s) 706, 836, 922
EcoRII CCWGG 2 cut(s) 727, 988
EcoRV GATATC 1 cut(s) 537
EcoT14I CCWWGG 2 cut(s) 42, 180
EcoT22I ATGCAT 1 cut(s) 643
ErhI CCWWGG 2 cut(s) 42, 180
FaeI CATG 4 cut(s) 382, 464, 629, 752
FaqI GGGAC 1 cut(s) 908
FatI CATG 4 cut(s) 378, 460, 625, 748
FauNDI CATATG 1 cut(s) 1008
FbaI TGATCA 3 cut(s) 13, 361, 550
Fnu4HI GCNGC 7 cut(s) 348, 369, 875, 1004, 1141, 1144, 1147
FokI GGATG 6 cut(s) 95, 528, 614, 623, 842, 857
Fsp4HI GCNGC 7 cut(s) 348, 369, 875, 1004, 1141, 1144, 1147
GlaI GCGC 1 cut(s) 165
GluI GCNGC 7 cut(s) 348, 369, 875, 1004, 1141, 1144, 1147
GsaI CCCAGC 1 cut(s) 40
GsuI CTGGAG 2 cut(s) 750, 1155
HaeIII GGCC 4 cut(s) 66, 179, 220, 634
HapII CCGG 1 cut(s) 221
HgaI GACGC 1 cut(s) 648
HhaI GCGC 1 cut(s) 166
Hin1II CATG 4 cut(s) 382, 464, 629, 752
Hin6I GCGC 1 cut(s) 164
HinP1I GCGC 1 cut(s) 164
HindIII AAGCTT 1 cut(s) 131
HpaII CCGG 1 cut(s) 221
HphI GGTGA 3 cut(s) 601, 617, 697
Hpy166II GTNNAC 4 cut(s) 418, 823, 851, 912
Hpy188I TCNGA 7 cut(s) 290, 550, 559, 867, 892, 949, 1062
Hpy188III TCNNGA 1 cut(s) 974
Hpy8I GTNNAC 4 cut(s) 418, 823, 851, 912
Hpy99I CGWCG 1 cut(s) 72
HpyAV CCTTC 1 cut(s) 187
HpyCH4III ACNGT 3 cut(s) 431, 502, 969
HpyCH4IV ACGT 2 cut(s) 263, 1014
HpyCH4V TGCA 9 cut(s) 281, 350, 371, 569, 641, 874, 1003, 1066, 1154
HpyF10VI GCNNNNNNNGC 6 cut(s) 344, 353, 374, 665, 768, 1146
HpyF3I CTNAG 3 cut(s) 54, 597, 906
HpySE526I ACGT 2 cut(s) 263, 1014
Hsp92II CATG 4 cut(s) 382, 464, 629, 752
HspAI GCGC 1 cut(s) 164
Ksp22I TGATCA 3 cut(s) 13, 361, 550
Kzo9I GATC 4 cut(s) 13, 361, 550, 721
LmnI GCTCC 2 cut(s) 86, 868
Lsp1109I GCAGC 4 cut(s) 334, 355, 886, 1015
LweI GCATC 3 cut(s) 334, 506, 1053
MaeII ACGT 2 cut(s) 263, 1014
MaeIII GTNAC 3 cut(s) 456, 475, 963
MalI GATC 4 cut(s) 15, 363, 552, 723
MboI GATC 4 cut(s) 13, 361, 550, 721
MboII GAAGA 2 cut(s) 202, 432
MfeI CAATTG 1 cut(s) 801
MluCI AATT 3 cut(s) 238, 801, 1126
MlyI GAGTC 3 cut(s) 97, 149, 741
MmeI TCCRAC 1 cut(s) 1060
Mph1103I ATGCAT 1 cut(s) 643
MseI TTAA 2 cut(s) 402, 1052
MslI CAYNNNNRTG 3 cut(s) 490, 514, 917
MspA1I CMGCKG 1 cut(s) 232
MspI CCGG 1 cut(s) 221
MspR9I CCNGG 2 cut(s) 729, 990
MunI CAATTG 1 cut(s) 801
MvaI CCWGG 2 cut(s) 729, 990
MvnI CGCG 1 cut(s) 166
MwoI GCNNNNNNNGC 6 cut(s) 344, 353, 374, 665, 768, 1146
NdeI CATATG 1 cut(s) 1008
NdeII GATC 4 cut(s) 13, 361, 550, 721
NlaIII CATG 4 cut(s) 382, 464, 629, 752
NlaIV GGNNCC 6 cut(s) 65, 88, 388, 699, 924, 1020
NmuCI GTSAC 2 cut(s) 456, 475
NsiI ATGCAT 1 cut(s) 643
PfeI GAWTC 8 cut(s) 172, 226, 452, 524, 578, 614, 881, 950
PflFI GACNNNGTC 1 cut(s) 106
PflMI CCANNNNNTGG 1 cut(s) 43
PkrI GCNGC 7 cut(s) 349, 370, 876, 1005, 1142, 1145, 1148
PleI GAGTC 3 cut(s) 97, 148, 740
PpsI GAGTC 3 cut(s) 97, 148, 740
Psp6I CCWGG 2 cut(s) 727, 988
PspFI CCCAGC 1 cut(s) 36
PspGI CCWGG 2 cut(s) 727, 988
PspN4I GGNNCC 6 cut(s) 65, 88, 388, 699, 924, 1020
PspPI GGNCC 5 cut(s) 64, 218, 706, 836, 922
PsyI GACNNNGTC 1 cut(s) 106
RsaI GTAC 1 cut(s) 325
RsaNI GTAC 1 cut(s) 324
RseI CAYNNNNRTG 3 cut(s) 490, 514, 917
SaqAI TTAA 2 cut(s) 402, 1052
SatI GCNGC 7 cut(s) 348, 369, 875, 1004, 1141, 1144, 1147
Sau3AI GATC 4 cut(s) 13, 361, 550, 721
Sau96I GGNCC 5 cut(s) 64, 218, 706, 836, 922
SchI GAGTC 3 cut(s) 97, 149, 741
ScrFI CCNGG 2 cut(s) 729, 990
SfaNI GCATC 3 cut(s) 334, 506, 1053
SinI GGWCC 3 cut(s) 706, 836, 922
SmiMI CAYNNNNRTG 3 cut(s) 490, 514, 917
Sse9I AATT 3 cut(s) 238, 801, 1126
SsiI CCGC 3 cut(s) 232, 1140, 1143
StyD4I CCNGG 2 cut(s) 727, 988
StyI CCWWGG 2 cut(s) 42, 180
TaaI ACNGT 3 cut(s) 431, 502, 969
TaiI ACGT 2 cut(s) 266, 1017
TaqI TCGA 4 cut(s) 70, 188, 617, 1119
TaqII GACCGA 2 cut(s) 534, 824
TasI AATT 3 cut(s) 238, 801, 1126
TauI GCSGC 2 cut(s) 1143, 1146
TfiI GAWTC 8 cut(s) 172, 226, 452, 524, 578, 614, 881, 950
Tru1I TTAA 2 cut(s) 402, 1052
Tru9I TTAA 2 cut(s) 402, 1052
TscAI CASTG 4 cut(s) 97, 397, 661, 1138
TseFI GTSAC 2 cut(s) 456, 475
TseI GCWGC 5 cut(s) 347, 368, 874, 1003, 1146
Tsp45I GTSAC 2 cut(s) 456, 475
TspDTI ATGAA 5 cut(s) 218, 465, 477, 627, 942
TspGWI ACGGA 1 cut(s) 1110
TspRI CASTG 4 cut(s) 97, 397, 661, 1138
Tth111I GACNNNGTC 1 cut(s) 106
Van91I CCANNNNNTGG 1 cut(s) 43
VpaK11BI GGWCC 3 cut(s) 706, 836, 922
Zsp2I ATGCAT 1 cut(s) 643
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.