RchiOBHm_Chr1g0371151

Dehydration-responsive element-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0014804
Physical Location & Seq
Reverse (-)
60472436 .. 60474734
2299 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ59524

Sequence Viewer

Length: 1155 bp
ATGGGTGCTTATGATCAAGGTTCTAATGGGTTTTCCCAGCCCTTGGGTAGTTCTAAGAAAAGGGGACGACGAAGTAAAAAGGATGGAGCCAGTGTTGTGGAGACTCTGTCAAGGTGGAAAGAATATAACAATCTTTTAGAGTCTGGGATTTACGATGACAAGGCGCGTAAGATTCAGGCCAAGGGGTCGAAGAAGGGTTGTATGAAAGGTAAAGGAGGGCCGGAGAATCAGCGGTGTAATTACAGAGGAGTTAGGCAGAGGACGTGGGGAAAGTGGGTTGCAGAAATCCGAGAGCCGAACAGAGGAAGTAGGCTTTGGTTAGGTACTTTTCCCACGGCTGTTGATGCTGCACTTGCTTATGATGAAGCTGCAAAAGCCATGTATGGTGCCACTGCTCGCCTTAACCACCCTAATGTAAACAGTCACAACAGTTATACATCTTCTTGGAATGACTCGTCACATGAAACTTCGTCAGTCACAACTCCATCAGGGTGTTCTACTGTGGCAACACAAGGATGCTGTGAATCTACTATGATATCAAATCAGTCTGATCACTCCGAGGTCTGTGCAGAGGAGGAATCTTTTATAGTGAAAACTGAGGATGGTGAGGATGAATCGACTAGTCATAATGCATTTACTCAACCCAGGACGTCTAATGCTACGGCAGATGTAGAAGTGAAAAGTGAGGTTCCTATGGACTACTTCCACACAGATCAACCTGGAGTCCAAGAGCAGGCACATGACTGGATTAGCACAGATGGCTTTGATATGGATTACTTGAAGCAGTTTTCAATTGATGAGCTTTTTGATGTGGACGAGCTTGTCGGCCCTATGGATGGTAAACCCATCCCTGCTCCGAGATTGCAGCAAGATTTAAGCTCCGATGTTGGTCGTCCTCAGTTCACGGATATGGTCCCTGTTGATAATAATGCCACACTATCGGATTCATCATACCAGTTACAGTATCCAGATGACAAGCCTCCTGGTGGTAATGTGCAGCATATGGACGTGGAGCCATCAGTTGCCGACTATGGTTTTGATTTGTTAAATCGTCAGATGCAAGAGAATAATGTTGGAGTAGATAATCACGGATACTTCAACGTAGATGATTTCGATTTCAATTTCACTGGAGGCTGCGGCGGCAATGCAAACTGA

Protein Analysis

384

Amino Acids

42.33

Weight (kDa)

4.75

Isoelectric Point (pI)

35.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 80 - 129 2e-14 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014804)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g25200 FvH4_7g25200
malus_domestica MD01G1158600.v1.1
prunus_persica Prupe.2G256900_v2.0.a1
pyrus_communis pycom01g17530 pycom07g20590
rosa_chinensis RchiOBHm_Chr1g0371151
rosa_laevigata RLG00000026982
rosa_multiflora Rmu_co8262865.1_g000001 Rmu_sc0003714.1_g000001
rosa_roxburghii Rroxscaffold_4G00285920
rosa_rugosa Rorug01G0361800
rosa_samantha Rh1AG371900 Rh1BG335300 Rh1CG348800 Rh1DG366800
rosa_wichuraiana Rw1G032710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 821
AatII GACGTC 1 cut(s) 653
AccB1I GGYRCC 1 cut(s) 386
AccB7I CCANNNNNTGG 1 cut(s) 43
AccII CGCG 1 cut(s) 166
AciI CCGC 3 cut(s) 232, 1137, 1140
AcyI GRCGYC 1 cut(s) 650
AfaI GTAC 1 cut(s) 325
AfiI CCNNNNNNNGG 5 cut(s) 43, 302, 733, 836, 986
AgsI TTSAA 4 cut(s) 781, 792, 1099, 1120
AhlI ACTAGT 1 cut(s) 620
AjiI CACGTC 2 cut(s) 264, 1009
AjnI CCWGG 3 cut(s) 644, 718, 982
AjuI GAANNNNNNNTTGG 2 cut(s) 298, 330
AluBI AGCT 4 cut(s) 368, 802, 820, 879
AluI AGCT 4 cut(s) 368, 802, 820, 879
Alw26I GTCTC 1 cut(s) 95
AoxI GGCC 3 cut(s) 177, 218, 826
ApeKI GCWGC 5 cut(s) 347, 368, 865, 997, 1134
ArsI GACNNNNNNTTYG 2 cut(s) 1019, 1051
AspLEI GCGC 1 cut(s) 166
AspS9I GGNCC 3 cut(s) 218, 827, 913
AsuHPI GGTGA 1 cut(s) 617
AvaII GGWCC 1 cut(s) 913
BanI GGYRCC 1 cut(s) 386
BbvI GCAGC 5 cut(s) 334, 355, 877, 1009, 1121
BccI CCATC 7 cut(s) 77, 493, 596, 752, 830, 854, 1024
BceAI ACGGC 2 cut(s) 351, 678
BcgI CGANNNNNNTGC 2 cut(s) 548, 582
BciT130I CCWGG 3 cut(s) 646, 720, 984
BciVI GTATCC 2 cut(s) 975, 1085
BclI TGATCA 2 cut(s) 13, 550
BcoDI GTCTC 1 cut(s) 95
BcuI ACTAGT 1 cut(s) 620
BfaI CTAG 1 cut(s) 621
BfuI GTATCC 2 cut(s) 975, 1085
BisI GCNGC 7 cut(s) 348, 369, 866, 998, 1135, 1138, 1141
BlsI GCNGC 7 cut(s) 349, 370, 867, 999, 1136, 1139, 1142
Bme1390I CCNGG 3 cut(s) 646, 720, 984
Bme18I GGWCC 1 cut(s) 913
BmgBI CACGTC 2 cut(s) 264, 1009
BmgT120I GGNCC 3 cut(s) 218, 827, 913
BmiI GGNNCC 5 cut(s) 88, 388, 690, 915, 1014
BmrFI CCNGG 3 cut(s) 646, 720, 984
BmsI GCATC 3 cut(s) 334, 506, 1047
BpmI CTGGAG 2 cut(s) 741, 1149
BsaHI GRCGYC 1 cut(s) 650
BsaJI CCNNGG 5 cut(s) 42, 180, 333, 558, 644
BsaXI ACNNNNNCTCC 4 cut(s) 78, 92, 108, 122
Bsc4I CCNNNNNNNGG 5 cut(s) 43, 302, 733, 836, 986
Bse1I ACTGG 4 cut(s) 90, 749, 955, 1132
Bse3DI GCAATG 1 cut(s) 1150
BseBI CCWGG 3 cut(s) 646, 720, 984
BseDI CCNNGG 5 cut(s) 42, 180, 333, 558, 644
BseGI GGATG 6 cut(s) 88, 521, 607, 616, 841, 846
BseLI CCNNNNNNNGG 5 cut(s) 43, 302, 733, 836, 986
BseMI GCAATG 1 cut(s) 1150
BseMII CTCAG 2 cut(s) 588, 911
BseNI ACTGG 4 cut(s) 90, 749, 955, 1132
BseRI GAGGAG 2 cut(s) 261, 587
BseXI GCAGC 5 cut(s) 334, 355, 877, 1009, 1121
BseYI CCCAGC 1 cut(s) 36
BsgI GTGCAG 3 cut(s) 333, 588, 1016
Bsh1236I CGCG 1 cut(s) 166
BshFI GGCC 3 cut(s) 179, 220, 828
BshNI GGYRCC 1 cut(s) 386
BsiSI CCGG 1 cut(s) 221
BslFI GGGAC 2 cut(s) 78, 899
BslI CCNNNNNNNGG 5 cut(s) 43, 302, 733, 836, 986
BsmAI GTCTC 1 cut(s) 95
BsmFI GGGAC 2 cut(s) 78, 899
BsnI GGCC 3 cut(s) 179, 220, 828
Bsp143I GATC 3 cut(s) 13, 550, 712
BspACI CCGC 3 cut(s) 232, 1137, 1140
BspANI GGCC 3 cut(s) 179, 220, 828
BspCNI CTCAG 2 cut(s) 589, 910
BspFNI CGCG 1 cut(s) 166
BspLI GGNNCC 5 cut(s) 88, 388, 690, 915, 1014
BspT107I GGYRCC 1 cut(s) 386
BsrDI GCAATG 1 cut(s) 1150
BsrI ACTGG 4 cut(s) 90, 749, 955, 1132
BssECI CCNNGG 5 cut(s) 42, 180, 333, 558, 644
BssMI GATC 3 cut(s) 13, 550, 712
BssNI GRCGYC 1 cut(s) 650
BssT1I CCWWGG 2 cut(s) 42, 180
Bst2UI CCWGG 3 cut(s) 646, 720, 984
Bst4CI ACNGT 4 cut(s) 422, 431, 502, 963
BstACI GRCGYC 1 cut(s) 650
BstC8I GCNNGC 2 cut(s) 397, 735
BstDEI CTNAG 3 cut(s) 54, 597, 897
BstDSI CCRYGG 1 cut(s) 333
BstF5I GGATG 6 cut(s) 88, 521, 607, 616, 841, 846
BstFNI CGCG 1 cut(s) 166
BstHHI GCGC 1 cut(s) 166
BstKTI GATC 3 cut(s) 16, 553, 715
BstMAI GTCTC 1 cut(s) 95
BstMBI GATC 3 cut(s) 13, 550, 712
BstMWI GCNNNNNNNGC 5 cut(s) 344, 353, 374, 759, 1140
BstNI CCWGG 3 cut(s) 646, 720, 984
BstSCI CCNGG 3 cut(s) 644, 718, 982
BstUI CGCG 1 cut(s) 166
BstV1I GCAGC 5 cut(s) 334, 355, 877, 1009, 1121
BstXI CCANNNNNNTGG 1 cut(s) 97
BsuI GTATCC 2 cut(s) 975, 1085
BsuRI GGCC 3 cut(s) 179, 220, 828
BtgI CCRYGG 1 cut(s) 333
BtrI CACGTC 2 cut(s) 264, 1009
BtsCI GGATG 6 cut(s) 88, 521, 607, 616, 841, 846
BtsI GCAGTG 1 cut(s) 390
BtsIMutI CAGTG 3 cut(s) 97, 390, 1125
Cac8I GCNNGC 2 cut(s) 397, 735
CfoI GCGC 1 cut(s) 166
Cfr13I GGNCC 3 cut(s) 218, 827, 913
Csp6I GTAC 1 cut(s) 324
CspCI CAANNNNNGTGG 2 cut(s) 322, 357
CviAII CATG 3 cut(s) 379, 461, 740
CviQI GTAC 1 cut(s) 324
DdeI CTNAG 3 cut(s) 54, 597, 897
DpnI GATC 3 cut(s) 15, 552, 714
DpnII GATC 3 cut(s) 13, 550, 712
DrdI GACNNNNNNGTC 1 cut(s) 821
DseDI GACNNNNNNGTC 1 cut(s) 821
Eco130I CCWWGG 2 cut(s) 42, 180
Eco32I GATATC 1 cut(s) 537
Eco47I GGWCC 1 cut(s) 913
EcoRII CCWGG 3 cut(s) 644, 718, 982
EcoRV GATATC 1 cut(s) 537
EcoT14I CCWWGG 2 cut(s) 42, 180
EcoT22I ATGCAT 1 cut(s) 634
ErhI CCWWGG 2 cut(s) 42, 180
FaeI CATG 3 cut(s) 382, 464, 743
FaqI GGGAC 2 cut(s) 78, 899
FatI CATG 3 cut(s) 378, 460, 739
FauNDI CATATG 1 cut(s) 1002
FbaI TGATCA 2 cut(s) 13, 550
Fnu4HI GCNGC 7 cut(s) 348, 369, 866, 998, 1135, 1138, 1141
FokI GGATG 6 cut(s) 95, 528, 614, 623, 833, 848
Fsp4HI GCNGC 7 cut(s) 348, 369, 866, 998, 1135, 1138, 1141
FspBI CTAG 1 cut(s) 621
GlaI GCGC 1 cut(s) 165
GluI GCNGC 7 cut(s) 348, 369, 866, 998, 1135, 1138, 1141
GsaI CCCAGC 1 cut(s) 40
GsuI CTGGAG 2 cut(s) 741, 1149
HaeIII GGCC 3 cut(s) 179, 220, 828
HapII CCGG 1 cut(s) 221
HhaI GCGC 1 cut(s) 166
Hin1I GRCGYC 1 cut(s) 650
Hin1II CATG 3 cut(s) 382, 464, 743
Hin6I GCGC 1 cut(s) 164
HinP1I GCGC 1 cut(s) 164
HpaII CCGG 1 cut(s) 221
HphI GGTGA 1 cut(s) 617
Hpy166II GTNNAC 4 cut(s) 418, 814, 842, 903
Hpy188I TCNGA 7 cut(s) 290, 550, 559, 858, 883, 943, 1056
Hpy188III TCNNGA 1 cut(s) 968
Hpy8I GTNNAC 4 cut(s) 418, 814, 842, 903
Hpy99I CGWCG 1 cut(s) 72
HpyAV CCTTC 1 cut(s) 187
HpyCH4III ACNGT 4 cut(s) 422, 431, 502, 963
HpyCH4IV ACGT 4 cut(s) 263, 650, 1008, 1101
HpyCH4V TGCA 9 cut(s) 281, 350, 371, 569, 632, 865, 997, 1060, 1148
HpyF10VI GCNNNNNNNGC 5 cut(s) 344, 353, 374, 759, 1140
HpyF3I CTNAG 3 cut(s) 54, 597, 897
HpySE526I ACGT 4 cut(s) 263, 650, 1008, 1101
Hsp92I GRCGYC 1 cut(s) 650
Hsp92II CATG 3 cut(s) 382, 464, 743
HspAI GCGC 1 cut(s) 164
Ksp22I TGATCA 2 cut(s) 13, 550
Kzo9I GATC 3 cut(s) 13, 550, 712
LmnI GCTCC 4 cut(s) 86, 859, 884, 1012
Lsp1109I GCAGC 5 cut(s) 334, 355, 877, 1009, 1121
LweI GCATC 3 cut(s) 334, 506, 1047
MaeI CTAG 1 cut(s) 621
MaeII ACGT 4 cut(s) 263, 650, 1008, 1101
MaeIII GTNAC 4 cut(s) 422, 456, 475, 957
MalI GATC 3 cut(s) 15, 552, 714
MboI GATC 3 cut(s) 13, 550, 712
MboII GAAGA 2 cut(s) 202, 432
MfeI CAATTG 1 cut(s) 792
MluCI AATT 3 cut(s) 238, 792, 1120
MlyI GAGTC 4 cut(s) 97, 149, 446, 732
MmeI TCCRAC 1 cut(s) 1054
Mph1103I ATGCAT 1 cut(s) 634
MseI TTAA 3 cut(s) 402, 875, 1046
MslI CAYNNNNRTG 4 cut(s) 411, 490, 514, 908
MspA1I CMGCKG 1 cut(s) 232
MspI CCGG 1 cut(s) 221
MspR9I CCNGG 3 cut(s) 646, 720, 984
MunI CAATTG 1 cut(s) 792
MvaI CCWGG 3 cut(s) 646, 720, 984
MvnI CGCG 1 cut(s) 166
MwoI GCNNNNNNNGC 5 cut(s) 344, 353, 374, 759, 1140
NdeI CATATG 1 cut(s) 1002
NdeII GATC 3 cut(s) 13, 550, 712
NlaIII CATG 3 cut(s) 382, 464, 743
NlaIV GGNNCC 5 cut(s) 88, 388, 690, 915, 1014
NmuCI GTSAC 3 cut(s) 422, 456, 475
NsiI ATGCAT 1 cut(s) 634
PfeI GAWTC 6 cut(s) 172, 226, 524, 578, 614, 944
PflFI GACNNNGTC 1 cut(s) 106
PflMI CCANNNNNTGG 1 cut(s) 43
PkrI GCNGC 7 cut(s) 349, 370, 867, 999, 1136, 1139, 1142
PleI GAGTC 4 cut(s) 97, 148, 446, 731
PpsI GAGTC 4 cut(s) 97, 148, 446, 731
Psp6I CCWGG 3 cut(s) 644, 718, 982
PspFI CCCAGC 1 cut(s) 36
PspGI CCWGG 3 cut(s) 644, 718, 982
PspN4I GGNNCC 5 cut(s) 88, 388, 690, 915, 1014
PspPI GGNCC 3 cut(s) 218, 827, 913
PsyI GACNNNGTC 1 cut(s) 106
RsaI GTAC 1 cut(s) 325
RsaNI GTAC 1 cut(s) 324
RseI CAYNNNNRTG 4 cut(s) 411, 490, 514, 908
SaqAI TTAA 3 cut(s) 402, 875, 1046
SatI GCNGC 7 cut(s) 348, 369, 866, 998, 1135, 1138, 1141
Sau3AI GATC 3 cut(s) 13, 550, 712
Sau96I GGNCC 3 cut(s) 218, 827, 913
SchI GAGTC 4 cut(s) 97, 149, 446, 732
ScrFI CCNGG 3 cut(s) 646, 720, 984
SfaNI GCATC 3 cut(s) 334, 506, 1047
SinI GGWCC 1 cut(s) 913
SmiMI CAYNNNNRTG 4 cut(s) 411, 490, 514, 908
SpeI ACTAGT 1 cut(s) 620
Sse9I AATT 3 cut(s) 238, 792, 1120
SsiI CCGC 3 cut(s) 232, 1137, 1140
SspMI CTAG 1 cut(s) 621
StyD4I CCNGG 3 cut(s) 644, 718, 982
StyI CCWWGG 2 cut(s) 42, 180
TaaI ACNGT 4 cut(s) 422, 431, 502, 963
TaiI ACGT 4 cut(s) 266, 653, 1011, 1104
TaqI TCGA 3 cut(s) 188, 617, 1113
TasI AATT 3 cut(s) 238, 792, 1120
TauI GCSGC 2 cut(s) 1140, 1143
TfiI GAWTC 6 cut(s) 172, 226, 524, 578, 614, 944
Tru1I TTAA 3 cut(s) 402, 875, 1046
Tru9I TTAA 3 cut(s) 402, 875, 1046
TscAI CASTG 3 cut(s) 97, 397, 1132
TseFI GTSAC 3 cut(s) 422, 456, 475
TseI GCWGC 5 cut(s) 347, 368, 865, 997, 1134
Tsp45I GTSAC 3 cut(s) 422, 456, 475
TspDTI ATGAA 5 cut(s) 218, 378, 477, 627, 936
TspGWI ACGGA 2 cut(s) 920, 1104
TspRI CASTG 3 cut(s) 97, 397, 1132
Tth111I GACNNNGTC 1 cut(s) 106
Van91I CCANNNNNTGG 1 cut(s) 43
VpaK11BI GGWCC 1 cut(s) 913
XspI CTAG 1 cut(s) 621
ZraI GACGTC 1 cut(s) 651
Zsp2I ATGCAT 1 cut(s) 634
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.