Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0014804

Physical Location & Seq

Genomic Coordinates Forward (+)

7460317 .. 7461477

Gene Structure 1161 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000026982

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

ATGGGTGCTTATGATCAAGGTTCTAATGGGTTTTCCCAGCCCTTGGGTAGTTCTAAGAAAAGGGGCCGACGAAGTAAAAAGGATGGAGCCAGTGTTGAGGAGACACTGTCAAGGTGGAAAGAATATAACAAGCTTTTAGAGTCTGGGATTTACGATGACAAGGCGCGTAAGATTCAGGCCAAGGGGTCGAAGAAGGGGTGTATGAAAGGTAAAGGAGGGCCGGAGAATCAGCGGTGTAATTACAGAGGTGTTAGGCAGAGGACGTGGGGGAAGTGGGTTGCAGAAATCCGAGAGCCGAACAGAGGAAGTAGGCTTTGGTTAGGTACTTTTCCCACGGCTGTTGATGCTGCACTTGCTTACGATGAAGCTGCAAAAGCCATGTATGGTGCCACTGCTCGCCTTAACCACCCTAATGTAAACAATCACAACAGTTATACATCTTCTTGGAATGAATCGTCACATGAAACTTCGTCAGTCACAACTCCATCAGGGTGTTCTACTGTGGCAACGCAAGGATGCTGTGAATCTACTACGATATCAAATCAGTCTGATCACTCCGAGGTCTGTGCAGAGGAGGAATCTTTTCTAGTGAAAACTGAGGATGGTGAGGGTGAATCGACAAGTCATGCTTGGCCTAATGCATTTACTGAACCCAGTGCGTCTAATGCTACGGCAGATGTAGAGGTGAAAAGTGAGGTTCCTATGGACCACTTCCACACAGATCAACCTGGAGTCCAGGAGCAGGCACATGACTGGATTAGCACAGATGGCTTTGATATGGATTACTTGAAGCAGTTTTCAATTGATGAGCTTTTTTATGTGGACGAGCTTGTCGGCCCTATGGATGGTAAACCCATCCCTGCTCCGAGATTGCAGCAAGATTTAAGCTCTGATGTTGGTCGTCCTCAGTTCACGGATATGGTCCCTGTCGATAATGCCACACTATCAGATTCATCATACCGGTTACAGTATCCAGATGACAAGCCTCCTGGTGGTAATGTGCAGCATATGGACGTGGAGCCATCAGTTGCCGACTATGGCTTTGATTTGTTAAATCGTCAGATGCAAGAGAATAATGTTGGAGTAGATAATCACGGATACTTCAATGTAGATGATTTCGATTTCAATTTCACCAGAGGCGGCGGCGGCAATGCAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0009891 GO:0009893 GO:0010033 GO:0010286 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901363 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

387

Amino Acids

42.57

Weight (kDa)

4.9

Isoelectric Point (pI)

37.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	80 - 129	2e-14	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014804)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g25200 FvH4_7g25200
malus_domestica	MD01G1158600.v1.1
prunus_persica	Prupe.2G256900_v2.0.a1
pyrus_communis	pycom01g17530 pycom07g20590
rosa_chinensis	RchiOBHm_Chr1g0371151
rosa_laevigata	RLG00000026982
rosa_multiflora	Rmu_co8262865.1_g000001 Rmu_sc0003714.1_g000001
rosa_roxburghii	Rroxscaffold_4G00285920
rosa_rugosa	Rorug01G0361800
rosa_samantha	Rh1AG371900 Rh1BG335300 Rh1CG348800 Rh1DG366800
rosa_wichuraiana	Rw1G032710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	830
AccB1I	GGYRCC	1 cut(s)	386
AccB7I	CCANNNNNTGG	1 cut(s)	43
AccII	CGCG	1 cut(s)	166
AciI	CCGC	4 cut(s)	232, 1140, 1143, 1146
AfaI	GTAC	1 cut(s)	325
AfiI	CCNNNNNNNGG	5 cut(s)	43, 302, 742, 845, 992
AgeI	ACCGGT	1 cut(s)	960
AgsI	TTSAA	4 cut(s)	790, 801, 1105, 1126
AjiI	CACGTC	2 cut(s)	264, 1015
AjnI	CCWGG	3 cut(s)	727, 735, 988
AjuI	GAANNNNNNNTTGG	2 cut(s)	298, 330
AluBI	AGCT	5 cut(s)	133, 368, 811, 829, 888
AluI	AGCT	5 cut(s)	133, 368, 811, 829, 888
Alw26I	GTCTC	1 cut(s)	95
AoxI	GGCC	5 cut(s)	64, 177, 218, 632, 835
ApeKI	GCWGC	4 cut(s)	347, 368, 874, 1003
ArsI	GACNNNNNNTTYG	2 cut(s)	1025, 1057
AsiGI	ACCGGT	1 cut(s)	960
Asp700I	GAANNNNTTC	1 cut(s)	582
AspLEI	GCGC	1 cut(s)	166
AspS9I	GGNCC	5 cut(s)	64, 218, 706, 836, 922
AsuHPI	GGTGA	4 cut(s)	617, 623, 697, 1123
AvaII	GGWCC	2 cut(s)	706, 922
BanI	GGYRCC	1 cut(s)	386
BbvI	GCAGC	4 cut(s)	334, 355, 886, 1015
BccI	CCATC	7 cut(s)	77, 493, 596, 761, 839, 863, 1030
BceAI	ACGGC	2 cut(s)	351, 687
BcgI	CGANNNNNNTGC	4 cut(s)	350, 384, 548, 582
BciT130I	CCWGG	3 cut(s)	729, 737, 990
BciVI	GTATCC	2 cut(s)	981, 1091
BclI	TGATCA	2 cut(s)	13, 550
BcoDI	GTCTC	1 cut(s)	95
BfaI	CTAG	1 cut(s)	587
BfuI	GTATCC	2 cut(s)	981, 1091
BisI	GCNGC	7 cut(s)	348, 369, 875, 1004, 1141, 1144, 1147
BlsI	GCNGC	7 cut(s)	349, 370, 876, 1005, 1142, 1145, 1148
Bme1390I	CCNGG	3 cut(s)	729, 737, 990
Bme18I	GGWCC	2 cut(s)	706, 922
BmgBI	CACGTC	2 cut(s)	264, 1015
BmgT120I	GGNCC	5 cut(s)	64, 218, 706, 836, 922
BmiI	GGNNCC	6 cut(s)	65, 88, 388, 699, 924, 1020
BmrFI	CCNGG	3 cut(s)	729, 737, 990
BmrI	ACTGGG	1 cut(s)	648
BmsI	GCATC	3 cut(s)	334, 506, 1053
BmuI	ACTGGG	1 cut(s)	648
BpmI	CTGGAG	1 cut(s)	750
BsaJI	CCNNGG	4 cut(s)	42, 180, 333, 558
BsaWI	WCCGGW	1 cut(s)	960
BsaXI	ACNNNNNCTCC	4 cut(s)	78, 92, 108, 122
Bsc4I	CCNNNNNNNGG	5 cut(s)	43, 302, 742, 845, 992
Bse118I	RCCGGY	1 cut(s)	960
Bse1I	ACTGG	3 cut(s)	90, 654, 758
Bse3DI	GCAATG	1 cut(s)	1156
BseBI	CCWGG	3 cut(s)	729, 737, 990
BseDI	CCNNGG	4 cut(s)	42, 180, 333, 558
BseGI	GGATG	5 cut(s)	88, 521, 607, 850, 855
BseLI	CCNNNNNNNGG	5 cut(s)	43, 302, 742, 845, 992
BseMI	GCAATG	1 cut(s)	1156
BseMII	CTCAG	2 cut(s)	588, 920
BseNI	ACTGG	3 cut(s)	90, 654, 758
BseRI	GAGGAG	2 cut(s)	113, 587
BseXI	GCAGC	4 cut(s)	334, 355, 886, 1015
BseYI	CCCAGC	1 cut(s)	36
BsgI	GTGCAG	3 cut(s)	333, 588, 1022
Bsh1236I	CGCG	1 cut(s)	166
BshFI	GGCC	5 cut(s)	66, 179, 220, 634, 837
BshNI	GGYRCC	1 cut(s)	386
BshTI	ACCGGT	1 cut(s)	960
BsiSI	CCGG	2 cut(s)	221, 961
BslFI	GGGAC	1 cut(s)	908
BslI	CCNNNNNNNGG	5 cut(s)	43, 302, 742, 845, 992
BsmAI	GTCTC	1 cut(s)	95
BsmFI	GGGAC	1 cut(s)	908
BsnI	GGCC	5 cut(s)	66, 179, 220, 634, 837
Bsp143I	GATC	3 cut(s)	13, 550, 721
BspACI	CCGC	4 cut(s)	232, 1140, 1143, 1146
BspANI	GGCC	5 cut(s)	66, 179, 220, 634, 837
BspCNI	CTCAG	2 cut(s)	589, 919
BspFNI	CGCG	1 cut(s)	166
BspLI	GGNNCC	6 cut(s)	65, 88, 388, 699, 924, 1020
BspT107I	GGYRCC	1 cut(s)	386
BsrDI	GCAATG	1 cut(s)	1156
BsrFI	RCCGGY	1 cut(s)	960
BsrI	ACTGG	3 cut(s)	90, 654, 758
BssAI	RCCGGY	1 cut(s)	960
BssECI	CCNNGG	4 cut(s)	42, 180, 333, 558
BssMI	GATC	3 cut(s)	13, 550, 721
BssT1I	CCWWGG	2 cut(s)	42, 180
Bst2UI	CCWGG	3 cut(s)	729, 737, 990
Bst4CI	ACNGT	4 cut(s)	108, 431, 502, 969
BstC8I	GCNNGC	2 cut(s)	397, 744
BstDEI	CTNAG	3 cut(s)	54, 597, 906
BstDSI	CCRYGG	1 cut(s)	333
BstF5I	GGATG	5 cut(s)	88, 521, 607, 850, 855
BstFNI	CGCG	1 cut(s)	166
BstHHI	GCGC	1 cut(s)	166
BstKTI	GATC	3 cut(s)	16, 553, 724
BstMAI	GTCTC	1 cut(s)	95
BstMBI	GATC	3 cut(s)	13, 550, 721
BstMWI	GCNNNNNNNGC	6 cut(s)	344, 353, 374, 665, 768, 1146
BstNI	CCWGG	3 cut(s)	729, 737, 990
BstSCI	CCNGG	3 cut(s)	727, 735, 988
BstUI	CGCG	1 cut(s)	166
BstV1I	GCAGC	4 cut(s)	334, 355, 886, 1015
BsuI	GTATCC	2 cut(s)	981, 1091
BsuRI	GGCC	5 cut(s)	66, 179, 220, 634, 837
BtgI	CCRYGG	1 cut(s)	333
BtrI	CACGTC	2 cut(s)	264, 1015
BtsCI	GGATG	5 cut(s)	88, 521, 607, 850, 855
BtsI	GCAGTG	1 cut(s)	390
BtsIMutI	CAGTG	4 cut(s)	97, 104, 390, 661
Cac8I	GCNNGC	2 cut(s)	397, 744
CfoI	GCGC	1 cut(s)	166
Cfr10I	RCCGGY	1 cut(s)	960
Cfr13I	GGNCC	5 cut(s)	64, 218, 706, 836, 922
CseI	GACGC	1 cut(s)	648
Csp6I	GTAC	1 cut(s)	324
CspAI	ACCGGT	1 cut(s)	960
CspCI	CAANNNNNGTGG	2 cut(s)	322, 357
CviAII	CATG	4 cut(s)	379, 461, 626, 749
CviQI	GTAC	1 cut(s)	324
DdeI	CTNAG	3 cut(s)	54, 597, 906
DpnI	GATC	3 cut(s)	15, 552, 723
DpnII	GATC	3 cut(s)	13, 550, 721
DrdI	GACNNNNNNGTC	1 cut(s)	830
DseDI	GACNNNNNNGTC	1 cut(s)	830
Eco130I	CCWWGG	2 cut(s)	42, 180
Eco32I	GATATC	1 cut(s)	537
Eco47I	GGWCC	2 cut(s)	706, 922
EcoRII	CCWGG	3 cut(s)	727, 735, 988
EcoRV	GATATC	1 cut(s)	537
EcoT14I	CCWWGG	2 cut(s)	42, 180
EcoT22I	ATGCAT	1 cut(s)	643
ErhI	CCWWGG	2 cut(s)	42, 180
FaeI	CATG	4 cut(s)	382, 464, 629, 752
FalI	AAGNNNNNCTT	2 cut(s)	613, 645
FaqI	GGGAC	1 cut(s)	908
FatI	CATG	4 cut(s)	378, 460, 625, 748
FauNDI	CATATG	1 cut(s)	1008
FbaI	TGATCA	2 cut(s)	13, 550
Fnu4HI	GCNGC	7 cut(s)	348, 369, 875, 1004, 1141, 1144, 1147
FokI	GGATG	5 cut(s)	95, 528, 614, 842, 857
Fsp4HI	GCNGC	7 cut(s)	348, 369, 875, 1004, 1141, 1144, 1147
FspBI	CTAG	1 cut(s)	587
GlaI	GCGC	1 cut(s)	165
GluI	GCNGC	7 cut(s)	348, 369, 875, 1004, 1141, 1144, 1147
GsaI	CCCAGC	1 cut(s)	40
GsuI	CTGGAG	1 cut(s)	750
HaeIII	GGCC	5 cut(s)	66, 179, 220, 634, 837
HapII	CCGG	2 cut(s)	221, 961
HgaI	GACGC	1 cut(s)	648
HhaI	GCGC	1 cut(s)	166
Hin1II	CATG	4 cut(s)	382, 464, 629, 752
Hin6I	GCGC	1 cut(s)	164
HinP1I	GCGC	1 cut(s)	164
HindIII	AAGCTT	1 cut(s)	131
HinfI	GANTC	9 cut(s)	140, 172, 226, 452, 524, 578, 614, 732, 950
HpaII	CCGG	2 cut(s)	221, 961
HphI	GGTGA	4 cut(s)	617, 623, 697, 1123
Hpy166II	GTNNAC	4 cut(s)	418, 823, 851, 912
Hpy188I	TCNGA	7 cut(s)	290, 550, 559, 867, 892, 949, 1062
Hpy188III	TCNNGA	1 cut(s)	974
Hpy8I	GTNNAC	4 cut(s)	418, 823, 851, 912
Hpy99I	CGWCG	1 cut(s)	72
HpyAV	CCTTC	1 cut(s)	187
HpyCH4III	ACNGT	4 cut(s)	108, 431, 502, 969
HpyCH4IV	ACGT	2 cut(s)	263, 1014
HpyCH4V	TGCA	9 cut(s)	281, 350, 371, 569, 641, 874, 1003, 1066, 1154
HpyF10VI	GCNNNNNNNGC	6 cut(s)	344, 353, 374, 665, 768, 1146
HpyF3I	CTNAG	3 cut(s)	54, 597, 906
HpySE526I	ACGT	2 cut(s)	263, 1014
Hsp92II	CATG	4 cut(s)	382, 464, 629, 752
HspAI	GCGC	1 cut(s)	164
Ksp22I	TGATCA	2 cut(s)	13, 550
Kzo9I	GATC	3 cut(s)	13, 550, 721
LmnI	GCTCC	4 cut(s)	86, 739, 868, 1018
Lsp1109I	GCAGC	4 cut(s)	334, 355, 886, 1015
LweI	GCATC	3 cut(s)	334, 506, 1053
MaeI	CTAG	1 cut(s)	587
MaeII	ACGT	2 cut(s)	263, 1014
MaeIII	GTNAC	3 cut(s)	456, 475, 963
MalI	GATC	3 cut(s)	15, 552, 723
MboI	GATC	3 cut(s)	13, 550, 721
MboII	GAAGA	2 cut(s)	202, 432
MfeI	CAATTG	1 cut(s)	801
MluCI	AATT	3 cut(s)	238, 801, 1126
MlyI	GAGTC	2 cut(s)	149, 741
MmeI	TCCRAC	1 cut(s)	1060
Mph1103I	ATGCAT	1 cut(s)	643
MroXI	GAANNNNTTC	1 cut(s)	582
MseI	TTAA	3 cut(s)	402, 884, 1052
MslI	CAYNNNNRTG	3 cut(s)	411, 490, 917
MspA1I	CMGCKG	1 cut(s)	232
MspI	CCGG	2 cut(s)	221, 961
MspR9I	CCNGG	3 cut(s)	729, 737, 990
MunI	CAATTG	1 cut(s)	801
MvaI	CCWGG	3 cut(s)	729, 737, 990
MvnI	CGCG	1 cut(s)	166
MwoI	GCNNNNNNNGC	6 cut(s)	344, 353, 374, 665, 768, 1146
NdeI	CATATG	1 cut(s)	1008
NdeII	GATC	3 cut(s)	13, 550, 721
NlaIII	CATG	4 cut(s)	382, 464, 629, 752
NlaIV	GGNNCC	6 cut(s)	65, 88, 388, 699, 924, 1020
NmuCI	GTSAC	2 cut(s)	456, 475
NsiI	ATGCAT	1 cut(s)	643
PdmI	GAANNNNTTC	1 cut(s)	582
PfeI	GAWTC	7 cut(s)	172, 226, 452, 524, 578, 614, 950
PflFI	GACNNNGTC	1 cut(s)	106
PflMI	CCANNNNNTGG	1 cut(s)	43
PfoI	TCCNGGA	1 cut(s)	735
PinAI	ACCGGT	1 cut(s)	960
PkrI	GCNGC	7 cut(s)	349, 370, 876, 1005, 1142, 1145, 1148
PleI	GAGTC	2 cut(s)	148, 740
PpsI	GAGTC	2 cut(s)	148, 740
Psp6I	CCWGG	3 cut(s)	727, 735, 988
PspFI	CCCAGC	1 cut(s)	36
PspGI	CCWGG	3 cut(s)	727, 735, 988
PspN4I	GGNNCC	6 cut(s)	65, 88, 388, 699, 924, 1020
PspPI	GGNCC	5 cut(s)	64, 218, 706, 836, 922
PsyI	GACNNNGTC	1 cut(s)	106
RsaI	GTAC	1 cut(s)	325
RsaNI	GTAC	1 cut(s)	324
RseI	CAYNNNNRTG	3 cut(s)	411, 490, 917
SaqAI	TTAA	3 cut(s)	402, 884, 1052
SatI	GCNGC	7 cut(s)	348, 369, 875, 1004, 1141, 1144, 1147
Sau3AI	GATC	3 cut(s)	13, 550, 721
Sau96I	GGNCC	5 cut(s)	64, 218, 706, 836, 922
SchI	GAGTC	2 cut(s)	149, 741
ScrFI	CCNGG	3 cut(s)	729, 737, 990
SfaNI	GCATC	3 cut(s)	334, 506, 1053
SinI	GGWCC	2 cut(s)	706, 922
SmiMI	CAYNNNNRTG	3 cut(s)	411, 490, 917
Sse9I	AATT	3 cut(s)	238, 801, 1126
SsiI	CCGC	4 cut(s)	232, 1140, 1143, 1146
SspMI	CTAG	1 cut(s)	587
StyD4I	CCNGG	3 cut(s)	727, 735, 988
StyI	CCWWGG	2 cut(s)	42, 180
TaaI	ACNGT	4 cut(s)	108, 431, 502, 969
TaiI	ACGT	2 cut(s)	266, 1017
TaqI	TCGA	4 cut(s)	188, 617, 930, 1119
TasI	AATT	3 cut(s)	238, 801, 1126
TauI	GCSGC	3 cut(s)	1143, 1146, 1149
TfiI	GAWTC	7 cut(s)	172, 226, 452, 524, 578, 614, 950
Tru1I	TTAA	3 cut(s)	402, 884, 1052
Tru9I	TTAA	3 cut(s)	402, 884, 1052
TscAI	CASTG	4 cut(s)	97, 111, 397, 661
TseFI	GTSAC	2 cut(s)	456, 475
TseI	GCWGC	4 cut(s)	347, 368, 874, 1003
Tsp45I	GTSAC	2 cut(s)	456, 475
TspDTI	ATGAA	5 cut(s)	218, 378, 465, 477, 942
TspGWI	ACGGA	2 cut(s)	929, 1110
TspRI	CASTG	4 cut(s)	97, 111, 397, 661
Tth111I	GACNNNGTC	1 cut(s)	106
Van91I	CCANNNNNTGG	1 cut(s)	43
VpaK11BI	GGWCC	2 cut(s)	706, 922
XmnI	GAANNNNTTC	1 cut(s)	582
XspI	CTAG	1 cut(s)	587
Zsp2I	ATGCAT	1 cut(s)	643

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.