FvH4_7g26420
ERF Family

belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0018079
Physical Location & Seq
Forward (+)
19965910 .. 19967289
1380 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g26420.t1

Sequence Viewer

Length: 651 bp
ATGCCGAACAGCGTGTCACTGGTTGATTATGTTATGCAAAAACAAGATATCTTGAGGGGGGTGCATCAAGCTCAGTCATCAAGCCAAGGAGGGGCTGTTTATCCTGCTCTAGGAGTAGTATTTCGAGAGTTGGTTGATGCTGTTATGCAAGTGAAAGTTGAGAACCTGATGATTAAAGGCGTCCTCAAATCGTTCAATGCCACGCTGAAATTTTTACAACCGCTAATAGAAGAGGTTGCGGAACATGGCAGGTTACTGCATCTCCCGGAGCAAGAAGTGGAAAAGCTTATTATACAATTAAAGAATGGTTTAGATTGTGTTCTTAAATGGTCCAAGGTTCGCAAGCATGCCAACTACAAAATGTACAAACACACCAACAAAATTGTCGATCTGGATGCATCTCTTCAAAGACTCTTTATGGAATTGAAAGGACAAGTAGAAAAGAATGCGAAGGAGACCATGGATTCTGCAAATAAAATAGAGGTGGAGATCAAGAAAATTAAAGCGGATGCGAAGAAGGCCATGGATTCTGCAAATAAAATAGAGATAGAGATCAAGAAAATTGAAGCTAAATTCAAAGGTTTATGTGATGATGATGTGAAACTCGAAAATTCTTCTATGCACCAAGGTGTAAGTGAACCGAGCAACTAA

Protein Analysis

217

Amino Acids

24.36

Weight (kDa)

8.66

Isoelectric Point (pI)

41.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RPW8 PF05659 35 - 165 1.9e-17 Arabidopsis broad-spectrum mildew resistance protein RPW8
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018079)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g26420
rosa_laevigata RLG00000026791 RLG00000026792 RLG00000034383 RLG00000034390 RLG00000034566
rosa_roxburghii Rroxscaffold_4G00283870 Rroxscaffold_5G00352570
rosa_samantha Rh1AG390300 Rh1AG390400
rosa_wichuraiana Rw1G034490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 240
AciI CCGC 3 cut(s) 221, 239, 506
AcsI RAATTY 3 cut(s) 209, 572, 610
AcyI GRCGYC 1 cut(s) 180
AfaI GTAC 1 cut(s) 365
AfiI CCNNNNNNNGG 2 cut(s) 91, 110
AgsI TTSAA 5 cut(s) 196, 407, 427, 566, 577
AleI CACNNNNGTG 1 cut(s) 627
AluBI AGCT 3 cut(s) 71, 286, 569
AluI AGCT 3 cut(s) 71, 286, 569
Alw26I GTCTC 1 cut(s) 449
AoxI GGCC 1 cut(s) 519
ApoI RAATTY 3 cut(s) 209, 572, 610
ArsI GACNNNNNNTTYG 1 cut(s) 31
AspS9I GGNCC 1 cut(s) 330
AsuC2I CCSGG 1 cut(s) 266
AvaII GGWCC 1 cut(s) 330
BcgI CGANNNNNNTGC 2 cut(s) 377, 411
BcnI CCSGG 1 cut(s) 266
BcoDI GTCTC 1 cut(s) 449
BfaI CTAG 1 cut(s) 110
BfuAI ACCTGC 1 cut(s) 240
Bme1390I CCNGG 1 cut(s) 266
Bme18I GGWCC 1 cut(s) 330
BmgT120I GGNCC 1 cut(s) 330
BmrFI CCNGG 1 cut(s) 266
BmsI GCATC 6 cut(s) 73, 127, 268, 385, 407, 499
BpuEI CTTGAG 1 cut(s) 73
BpuMI CCSGG 1 cut(s) 266
BsaBI GATNNNNATC 1 cut(s) 551
BsaHI GRCGYC 1 cut(s) 180
BsaI GGTCTC 1 cut(s) 449
BsaJI CCNNGG 5 cut(s) 85, 333, 459, 522, 625
BsaXI ACNNNNNCTCC 4 cut(s) 81, 111, 246, 276
Bsc4I CCNNNNNNNGG 2 cut(s) 91, 110
Bse1I ACTGG 1 cut(s) 24
Bse8I GATNNNNATC 1 cut(s) 551
BseDI CCNNGG 5 cut(s) 85, 333, 459, 522, 625
BseGI GGATG 2 cut(s) 400, 514
BseJI GATNNNNATC 1 cut(s) 551
BseLI CCNNNNNNNGG 2 cut(s) 91, 110
BseMII CTCAG 1 cut(s) 86
BseNI ACTGG 1 cut(s) 24
BshFI GGCC 1 cut(s) 521
BsiSI CCGG 1 cut(s) 266
BslI CCNNNNNNNGG 2 cut(s) 91, 110
BsmAI GTCTC 1 cut(s) 449
BsmI GAATGC 1 cut(s) 451
BsnI GGCC 1 cut(s) 521
Bso31I GGTCTC 1 cut(s) 449
Bsp1407I TGTACA 1 cut(s) 363
Bsp143I GATC 3 cut(s) 388, 489, 552
Bsp19I CCATGG 2 cut(s) 459, 522
BspACI CCGC 3 cut(s) 221, 239, 506
BspANI GGCC 1 cut(s) 521
BspCNI CTCAG 1 cut(s) 85
BspMI ACCTGC 1 cut(s) 240
BspTNI GGTCTC 1 cut(s) 449
BsrGI TGTACA 1 cut(s) 363
BsrI ACTGG 1 cut(s) 24
BssECI CCNNGG 5 cut(s) 85, 333, 459, 522, 625
BssMI GATC 3 cut(s) 388, 489, 552
BssNI GRCGYC 1 cut(s) 180
BssT1I CCWWGG 5 cut(s) 85, 333, 459, 522, 625
Bst6I CTCTTC 2 cut(s) 225, 408
BstACI GRCGYC 1 cut(s) 180
BstAUI TGTACA 1 cut(s) 363
BstC8I GCNNGC 2 cut(s) 344, 348
BstDEI CTNAG 1 cut(s) 72
BstDSI CCRYGG 2 cut(s) 459, 522
BstENI CCTNNNNNAGG 1 cut(s) 108
BstF5I GGATG 2 cut(s) 400, 514
BstKTI GATC 3 cut(s) 391, 492, 555
BstMAI GTCTC 1 cut(s) 449
BstMBI GATC 3 cut(s) 388, 489, 552
BstMWI GCNNNNNNNGC 1 cut(s) 518
BstNSI RCATGY 1 cut(s) 350
BstSCI CCNGG 1 cut(s) 264
BsuRI GGCC 1 cut(s) 521
BtgI CCRYGG 2 cut(s) 459, 522
BtsCI GGATG 2 cut(s) 400, 514
BtsIMutI CAGTG 1 cut(s) 17
BveI ACCTGC 1 cut(s) 240
Cac8I GCNNGC 2 cut(s) 344, 348
Cfr13I GGNCC 1 cut(s) 330
CseI GACGC 1 cut(s) 169
Csp6I GTAC 1 cut(s) 364
CviAII CATG 4 cut(s) 245, 347, 460, 523
CviJI RGCY 6 cut(s) 71, 84, 95, 286, 521, 569
CviKI_1 RGCY 6 cut(s) 71, 84, 95, 286, 521, 569
CviQI GTAC 1 cut(s) 364
DdeI CTNAG 1 cut(s) 72
DpnI GATC 3 cut(s) 390, 491, 554
DpnII GATC 3 cut(s) 388, 489, 552
Eam1104I CTCTTC 2 cut(s) 225, 408
EarI CTCTTC 2 cut(s) 225, 408
Eco130I CCWWGG 5 cut(s) 85, 333, 459, 522, 625
Eco31I GGTCTC 1 cut(s) 449
Eco32I GATATC 1 cut(s) 49
Eco47I GGWCC 1 cut(s) 330
EcoNI CCTNNNNNAGG 1 cut(s) 108
EcoRV GATATC 1 cut(s) 49
EcoT14I CCWWGG 5 cut(s) 85, 333, 459, 522, 625
EcoT22I ATGCAT 1 cut(s) 400
ErhI CCWWGG 5 cut(s) 85, 333, 459, 522, 625
FaeI CATG 4 cut(s) 248, 350, 463, 526
FatI CATG 4 cut(s) 244, 346, 459, 522
FokI GGATG 2 cut(s) 407, 521
FspBI CTAG 1 cut(s) 110
HaeIII GGCC 1 cut(s) 521
HapII CCGG 1 cut(s) 266
HgaI GACGC 1 cut(s) 169
Hin1I GRCGYC 1 cut(s) 180
Hin1II CATG 4 cut(s) 248, 350, 463, 526
HindIII AAGCTT 1 cut(s) 284
HinfI GANTC 3 cut(s) 411, 464, 527
HpaII CCGG 1 cut(s) 266
Hpy166II GTNNAC 1 cut(s) 638
Hpy188III TCNNGA 5 cut(s) 52, 125, 392, 493, 556
Hpy8I GTNNAC 1 cut(s) 638
HpyAV CCTTC 2 cut(s) 445, 511
HpyCH4V TGCA 8 cut(s) 37, 64, 148, 259, 398, 470, 533, 622
HpyF10VI GCNNNNNNNGC 1 cut(s) 518
HpyF3I CTNAG 1 cut(s) 72
Hsp92I GRCGYC 1 cut(s) 180
Hsp92II CATG 4 cut(s) 248, 350, 463, 526
Kzo9I GATC 3 cut(s) 388, 489, 552
LmnI GCTCC 1 cut(s) 268
LpnPI CCDG 6 cut(s) 5, 117, 179, 235, 279, 377
LweI GCATC 6 cut(s) 73, 127, 268, 385, 407, 499
MaeI CTAG 1 cut(s) 110
MaeIII GTNAC 2 cut(s) 15, 252
MalI GATC 3 cut(s) 390, 491, 554
MboI GATC 3 cut(s) 388, 489, 552
MboII GAAGA 4 cut(s) 242, 395, 526, 606
MluCI AATT 8 cut(s) 209, 296, 381, 422, 498, 561, 572, 610
MlyI GAGTC 1 cut(s) 405
MnlI CCTC 5 cut(s) 48, 83, 194, 226, 475
Mph1103I ATGCAT 1 cut(s) 400
MseI TTAA 4 cut(s) 174, 299, 324, 501
MslI CAYNNNNRTG 1 cut(s) 627
MspI CCGG 1 cut(s) 266
MspR9I CCNGG 1 cut(s) 266
Mva1269I GAATGC 1 cut(s) 451
MwoI GCNNNNNNNGC 1 cut(s) 518
NciI CCSGG 1 cut(s) 266
NcoI CCATGG 2 cut(s) 459, 522
NdeII GATC 3 cut(s) 388, 489, 552
NlaIII CATG 4 cut(s) 248, 350, 463, 526
NmuCI GTSAC 1 cut(s) 15
NsiI ATGCAT 1 cut(s) 400
NspI RCATGY 1 cut(s) 350
OliI CACNNNNGTG 1 cut(s) 627
PaeI GCATGC 1 cut(s) 350
PctI GAATGC 1 cut(s) 451
PfeI GAWTC 2 cut(s) 464, 527
PfoI TCCNGGA 1 cut(s) 264
PleI GAGTC 1 cut(s) 405
PpsI GAGTC 1 cut(s) 405
PspPI GGNCC 1 cut(s) 330
RsaI GTAC 1 cut(s) 365
RsaNI GTAC 1 cut(s) 364
RseI CAYNNNNRTG 1 cut(s) 627
SaqAI TTAA 4 cut(s) 174, 299, 324, 501
Sau3AI GATC 3 cut(s) 388, 489, 552
Sau96I GGNCC 1 cut(s) 330
SchI GAGTC 1 cut(s) 405
ScrFI CCNGG 1 cut(s) 266
SfaNI GCATC 6 cut(s) 73, 127, 268, 385, 407, 499
SinI GGWCC 1 cut(s) 330
SmiMI CAYNNNNRTG 1 cut(s) 627
SmlI CTYRAG 1 cut(s) 52
SmoI CTYRAG 1 cut(s) 52
SphI GCATGC 1 cut(s) 350
Sse9I AATT 8 cut(s) 209, 296, 381, 422, 498, 561, 572, 610
SsiI CCGC 3 cut(s) 221, 239, 506
SspMI CTAG 1 cut(s) 110
StyD4I CCNGG 1 cut(s) 264
StyI CCWWGG 5 cut(s) 85, 333, 459, 522, 625
TaqI TCGA 3 cut(s) 124, 387, 606
TasI AATT 8 cut(s) 209, 296, 381, 422, 498, 561, 572, 610
TatI WGTACW 1 cut(s) 363
TfiI GAWTC 2 cut(s) 464, 527
Tru1I TTAA 4 cut(s) 174, 299, 324, 501
Tru9I TTAA 4 cut(s) 174, 299, 324, 501
TscAI CASTG 1 cut(s) 24
TseFI GTSAC 1 cut(s) 15
Tsp45I GTSAC 1 cut(s) 15
TspRI CASTG 1 cut(s) 24
VpaK11BI GGWCC 1 cut(s) 330
XagI CCTNNNNNAGG 1 cut(s) 108
XapI RAATTY 3 cut(s) 209, 572, 610
XceI RCATGY 1 cut(s) 350
XspI CTAG 1 cut(s) 110
Zsp2I ATGCAT 1 cut(s) 400
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.