Rh1AG390400

PDDEXK-like family of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0018079
Physical Location & Seq
Forward (+)
61979035 .. 61979319
285 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG390400.1

Sequence Viewer

Length: 285 bp
ATGGAACAAGTAGAAAGGACTTTGAAGGAGGCCATGGATTCTACAAACAAAATAGAGATGGTGAACAACAAAATTGAAGAATTATGGCACTTGTTTGTTCGGCAGCTCTCCGAGTGTGTTATAATTTCTTCCACGGAAAAACCTACCGCTGGCGTCGATTTCAATGTGGACGATGGAGGAGCGATCGCTGCAGCCGAATTCGAGCCGAGCTTGGTTTGCCTGGTGAAGATGAATCAGAAAGAAACCAACGAGAAACTTTATATTCAACGAAGTTCATTGCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PDDEXK_6

Protein Analysis

94

Amino Acids

10.66

Weight (kDa)

4.71

Isoelectric Point (pI)

55.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018079)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g26420
rosa_laevigata RLG00000026791 RLG00000026792 RLG00000034383 RLG00000034390 RLG00000034566
rosa_roxburghii Rroxscaffold_4G00283870 Rroxscaffold_5G00352570
rosa_samantha Rh1AG390300 Rh1AG390400
rosa_wichuraiana Rw1G034490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 122
AciI CCGC 1 cut(s) 147
AcsI RAATTY 1 cut(s) 197
AcyI GRCGYC 1 cut(s) 153
AfiI CCNNNNNNNGG 1 cut(s) 149
AgsI TTSAA 4 cut(s) 25, 77, 163, 266
AjnI CCWGG 1 cut(s) 219
AluBI AGCT 2 cut(s) 106, 210
AluI AGCT 2 cut(s) 106, 210
AoxI GGCC 1 cut(s) 30
ApeKI GCWGC 3 cut(s) 103, 188, 191
ApoI RAATTY 1 cut(s) 197
AsiSI GCGATCGC 1 cut(s) 186
AsuHPI GGTGA 2 cut(s) 73, 235
BbvI GCAGC 3 cut(s) 115, 175, 203
BccI CCATC 2 cut(s) 52, 167
BciT130I CCWGG 1 cut(s) 221
BfmI CTRYAG 1 cut(s) 189
BisI GCNGC 3 cut(s) 104, 189, 192
BlsI GCNGC 3 cut(s) 105, 190, 193
Bme1390I CCNGG 1 cut(s) 221
BmrFI CCNGG 1 cut(s) 221
BsaHI GRCGYC 1 cut(s) 153
BsaJI CCNNGG 2 cut(s) 33, 132
Bsc4I CCNNNNNNNGG 1 cut(s) 149
Bse3DI GCAATG 1 cut(s) 275
BseBI CCWGG 1 cut(s) 221
BseDI CCNNGG 2 cut(s) 33, 132
BseLI CCNNNNNNNGG 1 cut(s) 149
BseMI GCAATG 1 cut(s) 275
BseRI GAGGAG 1 cut(s) 192
BseXI GCAGC 3 cut(s) 115, 175, 203
Bsh1285I CGRYCG 1 cut(s) 186
BshFI GGCC 1 cut(s) 32
BsiEI CGRYCG 1 cut(s) 186
BslI CCNNNNNNNGG 1 cut(s) 149
BsnI GGCC 1 cut(s) 32
Bsp143I GATC 1 cut(s) 183
Bsp19I CCATGG 1 cut(s) 33
BspACI CCGC 1 cut(s) 147
BspANI GGCC 1 cut(s) 32
BspMAI CTGCAG 1 cut(s) 193
BsrDI GCAATG 1 cut(s) 275
BssECI CCNNGG 2 cut(s) 33, 132
BssMI GATC 1 cut(s) 183
BssNI GRCGYC 1 cut(s) 153
BssT1I CCWWGG 1 cut(s) 33
Bst2UI CCWGG 1 cut(s) 221
BstACI GRCGYC 1 cut(s) 153
BstC8I GCNNGC 1 cut(s) 151
BstDSI CCRYGG 2 cut(s) 33, 132
BstKTI GATC 1 cut(s) 186
BstMBI GATC 1 cut(s) 183
BstMCI CGRYCG 1 cut(s) 186
BstMWI GCNNNNNNNGC 2 cut(s) 188, 216
BstNI CCWGG 1 cut(s) 221
BstSCI CCNGG 1 cut(s) 219
BstSFI CTRYAG 1 cut(s) 189
BstV1I GCAGC 3 cut(s) 115, 175, 203
BsuRI GGCC 1 cut(s) 32
BtgI CCRYGG 2 cut(s) 33, 132
Cac8I GCNNGC 1 cut(s) 151
CseI GACGC 1 cut(s) 142
CviAII CATG 1 cut(s) 34
CviJI RGCY 5 cut(s) 32, 106, 194, 205, 210
CviKI_1 RGCY 5 cut(s) 32, 106, 194, 205, 210
DpnI GATC 1 cut(s) 185
DpnII GATC 1 cut(s) 183
Eco130I CCWWGG 1 cut(s) 33
EcoRI GAATTC 1 cut(s) 197
EcoRII CCWGG 1 cut(s) 219
EcoT14I CCWWGG 1 cut(s) 33
ErhI CCWWGG 1 cut(s) 33
FaeI CATG 1 cut(s) 37
FaiI YATR 4 cut(s) 35, 85, 122, 261
FatI CATG 1 cut(s) 33
Fnu4HI GCNGC 3 cut(s) 104, 189, 192
Fsp4HI GCNGC 3 cut(s) 104, 189, 192
GluI GCNGC 3 cut(s) 104, 189, 192
HaeIII GGCC 1 cut(s) 32
HgaI GACGC 1 cut(s) 142
Hin1I GRCGYC 1 cut(s) 153
Hin1II CATG 1 cut(s) 37
HinfI GANTC 2 cut(s) 38, 232
HphI GGTGA 2 cut(s) 73, 235
Hpy166II GTNNAC 2 cut(s) 64, 169
Hpy188I TCNGA 2 cut(s) 112, 237
Hpy8I GTNNAC 2 cut(s) 64, 169
Hpy99I CGWCG 1 cut(s) 158
HpyAV CCTTC 1 cut(s) 19
HpyCH4V TGCA 2 cut(s) 191, 280
HpyF10VI GCNNNNNNNGC 2 cut(s) 188, 216
Hsp92I GRCGYC 1 cut(s) 153
Hsp92II CATG 1 cut(s) 37
Kzo9I GATC 1 cut(s) 183
LmnI GCTCC 1 cut(s) 179
LpnPI CCDG 3 cut(s) 135, 206, 233
Lsp1109I GCAGC 3 cut(s) 115, 175, 203
MalI GATC 1 cut(s) 185
MboI GATC 1 cut(s) 183
MboII GAAGA 3 cut(s) 89, 120, 238
MluCI AATT 4 cut(s) 72, 80, 123, 197
MnlI CCTC 2 cut(s) 22, 170
MslI CAYNNNNRTG 1 cut(s) 280
MspA1I CMGCKG 1 cut(s) 149
MspR9I CCNGG 1 cut(s) 221
MvaI CCWGG 1 cut(s) 221
MwoI GCNNNNNNNGC 2 cut(s) 188, 216
NcoI CCATGG 1 cut(s) 33
NdeII GATC 1 cut(s) 183
NlaIII CATG 1 cut(s) 37
NmeAIII GCCGAG 1 cut(s) 231
PcsI WCGNNNNNNNCGW 1 cut(s) 192
PfeI GAWTC 2 cut(s) 38, 232
PkrI GCNGC 3 cut(s) 105, 190, 193
Ple19I CGATCG 1 cut(s) 186
PsiI TTATAA 1 cut(s) 122
Psp6I CCWGG 1 cut(s) 219
PspGI CCWGG 1 cut(s) 219
PstI CTGCAG 1 cut(s) 193
PvuI CGATCG 1 cut(s) 186
RgaI GCGATCGC 1 cut(s) 186
RseI CAYNNNNRTG 1 cut(s) 280
SatI GCNGC 3 cut(s) 104, 189, 192
Sau3AI GATC 1 cut(s) 183
ScrFI CCNGG 1 cut(s) 221
SetI ASST 3 cut(s) 108, 145, 212
SfaAI GCGATCGC 1 cut(s) 186
SfcI CTRYAG 1 cut(s) 189
SgfI GCGATCGC 1 cut(s) 186
SmiMI CAYNNNNRTG 1 cut(s) 280
Sse9I AATT 4 cut(s) 72, 80, 123, 197
SsiI CCGC 1 cut(s) 147
StyD4I CCNGG 1 cut(s) 219
StyI CCWWGG 1 cut(s) 33
TaqI TCGA 2 cut(s) 156, 201
TasI AATT 4 cut(s) 72, 80, 123, 197
TfiI GAWTC 2 cut(s) 38, 232
TseI GCWGC 3 cut(s) 103, 188, 191
TspDTI ATGAA 2 cut(s) 245, 264
TspGWI ACGGA 1 cut(s) 149
XapI RAATTY 1 cut(s) 197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.