Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0018079

Physical Location & Seq

Genomic Coordinates Reverse (-)

41880976 .. 41881835

Gene Structure 860 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000034390

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGGAGAAAAAACAAGGTGAATTGGAGAAAAAAGTAAGTGATGTATTGAAGGGGCAGCAAGAATCCAATGCTATATCAATGAAGCAGCATGAAGCAATACAAAGACTTGTTCTTAATAGCGTGCAACTACAAGCTCCATCATCAAGCAGAGGAGGGGCTGCTGATCCTACTCTAGGAATAACATTCCAACAGTTGGTTGATGCTGTCATACAAGTAGAAGTCAAGAGCATGGTAGAAAGGACTTTGAAGGAGGCCAGGGATTTTGCAAACAAAATAGATATGGCGAACAAGAAAATTGAGGCTGCATGTTTATGTAACGTGCAGCTGCCTGCAGTTGGATTTGATATACTCAACATGCATGGACAAAGAGATGTGACTGAGGAGACTCTGTTGGACTCGGCAAGTGTTAAAGAGGAGGGGATCAAACAAATTGAAGGGAGTGATGCAGTACAAAATCAAATGAAGACTGAAGGTTCATCTGACGTGTTGCTTGAACTTTATTCACCTGCGGATGGATTGGATGTACTGAATATGCAGGGACCATTGGATCTTATTAACACAAATATCCAAGTGGTGGTCACAGAATCAAAAGAAATAAATGCTAGCTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0007275 GO:0008150 GO:0009555 GO:0032501 GO:0032502 GO:0048229 GO:0048856

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

PPR Pkinase Pkinase_Tyr

Protein Analysis

204

Amino Acids

22.1

Weight (kDa)

4.69

Isoelectric Point (pI)

46.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018079)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g26420
rosa_laevigata	RLG00000026791 RLG00000026792 RLG00000034383 RLG00000034390 RLG00000034566
rosa_roxburghii	Rroxscaffold_4G00283870 Rroxscaffold_5G00352570
rosa_samantha	Rh1AG390300 Rh1AG390400
rosa_wichuraiana	Rw1G034490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	514
Acc36I	ACCTGC	1 cut(s)	514
AccB7I	CCANNNNNTGG	2 cut(s)	193, 574
AciI	CCGC	1 cut(s)	509
AclWI	GGATC	3 cut(s)	158, 428, 555
AcuI	CTGAAG	1 cut(s)	489
AfaI	GTAC	2 cut(s)	450, 525
AfiI	CCNNNNNNNGG	5 cut(s)	173, 193, 335, 512, 574
AflIII	ACRYGT	1 cut(s)	483
AgsI	TTSAA	4 cut(s)	49, 247, 434, 494
AjiI	CACGTC	1 cut(s)	484
AjnI	CCWGG	1 cut(s)	254
AluBI	AGCT	3 cut(s)	134, 325, 606
AluI	AGCT	3 cut(s)	134, 325, 606
Alw26I	GTCTC	1 cut(s)	377
AlwI	GGATC	3 cut(s)	158, 428, 555
AoxI	GGCC	1 cut(s)	252
ApeKI	GCWGC	6 cut(s)	55, 85, 158, 302, 322, 325
AspS9I	GGNCC	1 cut(s)	539
AsuHPI	GGTGA	2 cut(s)	29, 495
AsuNHI	GCTAGC	1 cut(s)	602
AvaII	GGWCC	1 cut(s)	539
BbsI	GAAGAC	1 cut(s)	470
BbvI	GCAGC	6 cut(s)	67, 97, 145, 289, 312, 334
BccI	CCATC	2 cut(s)	145, 506
BciT130I	CCWGG	1 cut(s)	256
BcoDI	GTCTC	1 cut(s)	377
BfaI	CTAG	2 cut(s)	173, 603
BfmI	CTRYAG	1 cut(s)	330
BfuAI	ACCTGC	1 cut(s)	514
BisI	GCNGC	6 cut(s)	56, 86, 159, 303, 323, 326
BlsI	GCNGC	6 cut(s)	57, 87, 160, 304, 324, 327
Bme1390I	CCNGG	1 cut(s)	256
Bme18I	GGWCC	1 cut(s)	539
BmgBI	CACGTC	1 cut(s)	484
BmgT120I	GGNCC	1 cut(s)	539
BmiI	GGNNCC	1 cut(s)	540
BmrFI	CCNGG	1 cut(s)	256
BmsI	GCATC	2 cut(s)	190, 433
BmtI	GCTAGC	1 cut(s)	606
BpiI	GAAGAC	1 cut(s)	470
BsaJI	CCNNGG	1 cut(s)	255
BsaXI	ACNNNNNCTCC	2 cut(s)	374, 404
Bsc4I	CCNNNNNNNGG	5 cut(s)	173, 193, 335, 512, 574
BseBI	CCWGG	1 cut(s)	256
BseDI	CCNNGG	1 cut(s)	255
BseGI	GGATG	2 cut(s)	517, 526
BseLI	CCNNNNNNNGG	5 cut(s)	173, 193, 335, 512, 574
BseMII	CTCAG	1 cut(s)	369
BseRI	GAGGAG	3 cut(s)	165, 395, 428
BseXI	GCAGC	6 cut(s)	67, 97, 145, 289, 312, 334
BsgI	GTGCAG	1 cut(s)	341
BshFI	GGCC	1 cut(s)	254
BslFI	GGGAC	1 cut(s)	552
BslI	CCNNNNNNNGG	5 cut(s)	173, 193, 335, 512, 574
BsmAI	GTCTC	1 cut(s)	377
BsmFI	GGGAC	1 cut(s)	552
BsnI	GGCC	1 cut(s)	254
Bsp143I	GATC	3 cut(s)	163, 420, 547
BspACI	CCGC	1 cut(s)	509
BspANI	GGCC	1 cut(s)	254
BspCNI	CTCAG	1 cut(s)	370
BspLI	GGNNCC	1 cut(s)	540
BspMAI	CTGCAG	1 cut(s)	334
BspMI	ACCTGC	1 cut(s)	514
BspOI	GCTAGC	1 cut(s)	606
BspPI	GGATC	3 cut(s)	158, 428, 555
BssECI	CCNNGG	1 cut(s)	255
BssMI	GATC	3 cut(s)	163, 420, 547
Bst2UI	CCWGG	1 cut(s)	256
Bst4CI	ACNGT	1 cut(s)	192
BstC8I	GCNNGC	3 cut(s)	122, 330, 604
BstDEI	CTNAG	1 cut(s)	378
BstENI	CCTNNNNNAGG	1 cut(s)	171
BstF5I	GGATG	2 cut(s)	517, 526
BstKTI	GATC	3 cut(s)	166, 423, 550
BstMAI	GTCTC	1 cut(s)	377
BstMBI	GATC	3 cut(s)	163, 420, 547
BstNI	CCWGG	1 cut(s)	256
BstNSI	RCATGY	2 cut(s)	309, 358
BstSCI	CCNGG	1 cut(s)	254
BstSFI	CTRYAG	1 cut(s)	330
BstV1I	GCAGC	6 cut(s)	67, 97, 145, 289, 312, 334
BstV2I	GAAGAC	1 cut(s)	470
BstX2I	RGATCY	1 cut(s)	547
BstYI	RGATCY	1 cut(s)	547
BsuRI	GGCC	1 cut(s)	254
BtrI	CACGTC	1 cut(s)	484
BtsCI	GGATG	2 cut(s)	517, 526
BveI	ACCTGC	1 cut(s)	514
Cac8I	GCNNGC	3 cut(s)	122, 330, 604
Cfr13I	GGNCC	1 cut(s)	539
Csp6I	GTAC	2 cut(s)	449, 524
CviAII	CATG	5 cut(s)	89, 229, 306, 355, 359
CviJI	RGCY	6 cut(s)	134, 158, 254, 302, 325, 606
CviKI_1	RGCY	6 cut(s)	134, 158, 254, 302, 325, 606
CviQI	GTAC	2 cut(s)	449, 524
DdeI	CTNAG	1 cut(s)	378
DpnI	GATC	3 cut(s)	165, 422, 549
DpnII	GATC	3 cut(s)	163, 420, 547
Eco47I	GGWCC	1 cut(s)	539
Eco57I	CTGAAG	1 cut(s)	489
EcoNI	CCTNNNNNAGG	1 cut(s)	171
EcoRII	CCWGG	1 cut(s)	254
EcoT22I	ATGCAT	1 cut(s)	360
FaeI	CATG	5 cut(s)	92, 232, 309, 358, 362
FaqI	GGGAC	1 cut(s)	552
FatI	CATG	5 cut(s)	88, 228, 305, 354, 358
Fnu4HI	GCNGC	6 cut(s)	56, 86, 159, 303, 323, 326
FokI	GGATG	2 cut(s)	524, 533
Fsp4HI	GCNGC	6 cut(s)	56, 86, 159, 303, 323, 326
FspBI	CTAG	2 cut(s)	173, 603
GluI	GCNGC	6 cut(s)	56, 86, 159, 303, 323, 326
HaeIII	GGCC	1 cut(s)	254
Hin1II	CATG	5 cut(s)	92, 232, 309, 358, 362
HinfI	GANTC	4 cut(s)	62, 385, 395, 584
HphI	GGTGA	2 cut(s)	29, 495
Hpy188I	TCNGA	1 cut(s)	481
Hpy188III	TCNNGA	1 cut(s)	223
HpyAV	CCTTC	4 cut(s)	43, 241, 428, 464
HpyCH4III	ACNGT	1 cut(s)	192
HpyCH4IV	ACGT	2 cut(s)	318, 483
HpyCH4V	TGCA	8 cut(s)	124, 266, 305, 322, 332, 358, 446, 535
HpyF3I	CTNAG	1 cut(s)	378
HpySE526I	ACGT	2 cut(s)	318, 483
Hsp92II	CATG	5 cut(s)	92, 232, 309, 358, 362
Kzo9I	GATC	3 cut(s)	163, 420, 547
LmnI	GCTCC	1 cut(s)	139
LpnPI	CCDG	5 cut(s)	241, 268, 342, 519, 521
Lsp1109I	GCAGC	6 cut(s)	67, 97, 145, 289, 312, 334
LweI	GCATC	2 cut(s)	190, 433
MaeI	CTAG	2 cut(s)	173, 603
MaeII	ACGT	2 cut(s)	318, 483
MaeIII	GTNAC	3 cut(s)	314, 373, 577
MalI	GATC	3 cut(s)	165, 422, 549
MboI	GATC	3 cut(s)	163, 420, 547
MboII	GAAGA	1 cut(s)	475
MflI	RGATCY	1 cut(s)	547
MluCI	AATT	3 cut(s)	20, 294, 429
MlyI	GAGTC	2 cut(s)	379, 389
MmeI	TCCRAC	3 cut(s)	211, 316, 372
MnlI	CCTC	7 cut(s)	143, 146, 244, 292, 373, 406, 409
Mph1103I	ATGCAT	1 cut(s)	360
MseI	TTAA	3 cut(s)	114, 408, 555
MslI	CAYNNNNRTG	1 cut(s)	310
MspA1I	CMGCKG	1 cut(s)	325
MspR9I	CCNGG	1 cut(s)	256
MvaI	CCWGG	1 cut(s)	256
NdeII	GATC	3 cut(s)	163, 420, 547
NheI	GCTAGC	1 cut(s)	602
NlaIII	CATG	5 cut(s)	92, 232, 309, 358, 362
NlaIV	GGNNCC	1 cut(s)	540
NmeAIII	GCCGAG	1 cut(s)	377
NmuCI	GTSAC	2 cut(s)	373, 577
NsiI	ATGCAT	1 cut(s)	360
NspI	RCATGY	2 cut(s)	309, 358
PaqCI	CACCTGC	1 cut(s)	514
PfeI	GAWTC	2 cut(s)	62, 584
PflMI	CCANNNNNTGG	2 cut(s)	193, 574
PkrI	GCNGC	6 cut(s)	57, 87, 160, 304, 324, 327
PleI	GAGTC	2 cut(s)	379, 389
PpsI	GAGTC	2 cut(s)	379, 389
Psp6I	CCWGG	1 cut(s)	254
PspGI	CCWGG	1 cut(s)	254
PspN4I	GGNNCC	1 cut(s)	540
PspPI	GGNCC	1 cut(s)	539
PstI	CTGCAG	1 cut(s)	334
PsuI	RGATCY	1 cut(s)	547
PvuII	CAGCTG	1 cut(s)	325
RsaI	GTAC	2 cut(s)	450, 525
RsaNI	GTAC	2 cut(s)	449, 524
RseI	CAYNNNNRTG	1 cut(s)	310
SaqAI	TTAA	3 cut(s)	114, 408, 555
SatI	GCNGC	6 cut(s)	56, 86, 159, 303, 323, 326
Sau3AI	GATC	3 cut(s)	163, 420, 547
Sau96I	GGNCC	1 cut(s)	539
SchI	GAGTC	2 cut(s)	379, 389
ScrFI	CCNGG	1 cut(s)	256
SetI	ASST	8 cut(s)	19, 136, 321, 327, 475, 486, 508, 608
SfaNI	GCATC	2 cut(s)	190, 433
SfcI	CTRYAG	1 cut(s)	330
SinI	GGWCC	1 cut(s)	539
SmiMI	CAYNNNNRTG	1 cut(s)	310
Sse9I	AATT	3 cut(s)	20, 294, 429
SsiI	CCGC	1 cut(s)	509
SspMI	CTAG	2 cut(s)	173, 603
StyD4I	CCNGG	1 cut(s)	254
TaaI	ACNGT	1 cut(s)	192
TaiI	ACGT	2 cut(s)	321, 486
TasI	AATT	3 cut(s)	20, 294, 429
TatI	WGTACW	2 cut(s)	448, 523
TfiI	GAWTC	2 cut(s)	62, 584
Tru1I	TTAA	3 cut(s)	114, 408, 555
Tru9I	TTAA	3 cut(s)	114, 408, 555
TseFI	GTSAC	2 cut(s)	373, 577
TseI	GCWGC	6 cut(s)	55, 85, 158, 302, 322, 325
Tsp45I	GTSAC	2 cut(s)	373, 577
TspDTI	ATGAA	4 cut(s)	95, 105, 465, 476
Van91I	CCANNNNNTGG	2 cut(s)	193, 574
VpaK11BI	GGWCC	1 cut(s)	539
XagI	CCTNNNNNAGG	1 cut(s)	171
XceI	RCATGY	2 cut(s)	309, 358
XspI	CTAG	2 cut(s)	173, 603
Zsp2I	ATGCAT	1 cut(s)	360

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.