RLG00000026792
ERF Family

belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0018079
Physical Location & Seq
Reverse (-)
6077394 .. 6078233
840 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000026792

Sequence Viewer

Length: 840 bp
ATGACTGAGCTTGTATCTCTGACAAGAGACGTCAAAAACAAACAAGATGATTTGCAGAAAAAACAAGGTCAACTGTTGAGGAAGATGCAGGAATTCTGGAAAAGAATAGATGAATTATTGGCTAAAGCAGATGGTATATTGAGGGGGCAAGAGGAATCCTATGCTATATTGATGGAGCAGCGTGAAGCAATACAGAGACTTCTTTCTAATAACGTTGAGCAAGCTCCATCATCAAGCGAAGGAGGGGCTGCTTATCCTGCTCTAGGAGTAGCATTCCGACAGTTGGTTAATGCTGTCACACAAGTGAAAGTCGAGAACAAGTCTTTTAAATACTTCTTCAACACATTCAAACACACGCTCTACTGCTTACAACCACTGATAGAAGAGGTAGCAGAACATGGCAGGGTAGTGCACCTTCCAAAGCAAGAAGTGGAAAAGCTTATTATAGAAATAGTGAATGGGGTAGAGCTCGTTGACAAATGCTCCAAGGTTCGGAAGCATACCAACTACAAAAACTATAAATTCACCAACAATATTATCAATTTGAAGGAATCTCTGTTCAGACTCTTCATTGAACTCATGGAACAAGTAGAAAGGACTTTGAAGGAGGCCATGGATTCTACAAACAAAATAGAGATGGTGAACAACAAAATTGAAGAATTATGGCACTTGTTTGTCCAGCAGCTCTCCGAGTGTGTTAGAATTTCTTCCATTGAAAAACCTACCGCTGGCGTCGATTTCAATGTGGACGGTGGAGGAGCGATCGCTGCAGCCGAATTCGAGCCGAGCTTGGTTTGCTTGGCGAAGATGAATCAGAAAGAAACCAACGAGAAACTTTAG

Protein Analysis

280

Amino Acids

31.99

Weight (kDa)

6.28

Isoelectric Point (pI)

50.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RPW8 PF05659 86 - 207 3.9e-19 Arabidopsis broad-spectrum mildew resistance protein RPW8
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018079)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g26420
rosa_laevigata RLG00000026791 RLG00000026792 RLG00000034383 RLG00000034390 RLG00000034566
rosa_roxburghii Rroxscaffold_4G00283870 Rroxscaffold_5G00352570
rosa_samantha Rh1AG390300 Rh1AG390400
rosa_wichuraiana Rw1G034490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 33
AciI CCGC 1 cut(s) 726
AclI AACGTT 1 cut(s) 213
AcsI RAATTY 4 cut(s) 92, 521, 702, 776
AcyI GRCGYC 2 cut(s) 30, 732
AfiI CCNNNNNNNGG 4 cut(s) 263, 283, 492, 728
AgsI TTSAA 8 cut(s) 340, 349, 547, 575, 604, 656, 716, 742
AleI CACNNNNGTG 1 cut(s) 302
AloI GAACNNNNNNTCC 2 cut(s) 542, 574
AluBI AGCT 6 cut(s) 10, 224, 439, 469, 685, 789
AluI AGCT 6 cut(s) 10, 224, 439, 469, 685, 789
Alw21I GWGCWC 2 cut(s) 414, 471
Alw26I GTCTC 2 cut(s) 21, 190
Alw44I GTGCAC 1 cut(s) 410
AoxI GGCC 1 cut(s) 609
ApaLI GTGCAC 1 cut(s) 410
ApeKI GCWGC 5 cut(s) 178, 248, 682, 767, 770
ApoI RAATTY 4 cut(s) 92, 521, 702, 776
AsiSI GCGATCGC 1 cut(s) 765
Asp700I GAANNNNTTC 1 cut(s) 706
AsuHPI GGTGA 2 cut(s) 517, 652
BaeGI GKGCMC 1 cut(s) 414
BanII GRGCYC 1 cut(s) 471
BarI GAAGNNNNNNTAC 2 cut(s) 399, 431
Bbv12I GWGCWC 2 cut(s) 414, 471
BbvI GCAGC 5 cut(s) 190, 235, 694, 754, 782
BccI CCATC 4 cut(s) 125, 166, 235, 631
BcoDI GTCTC 2 cut(s) 21, 190
BfaI CTAG 1 cut(s) 263
BfmI CTRYAG 1 cut(s) 768
BisI GCNGC 5 cut(s) 179, 249, 683, 768, 771
BlsI GCNGC 5 cut(s) 180, 250, 684, 769, 772
BmsI GCATC 1 cut(s) 75
BsaHI GRCGYC 2 cut(s) 30, 732
BsaJI CCNNGG 2 cut(s) 486, 612
BsaXI ACNNNNNCTCC 2 cut(s) 467, 497
Bsc4I CCNNNNNNNGG 4 cut(s) 263, 283, 492, 728
BseDI CCNNGG 2 cut(s) 486, 612
BseLI CCNNNNNNNGG 4 cut(s) 263, 283, 492, 728
BseRI GAGGAG 1 cut(s) 771
BseSI GKGCMC 1 cut(s) 414
BseXI GCAGC 5 cut(s) 190, 235, 694, 754, 782
Bsh1285I CGRYCG 1 cut(s) 765
BshFI GGCC 1 cut(s) 611
BsiEI CGRYCG 1 cut(s) 765
BsiHKAI GWGCWC 2 cut(s) 414, 471
BslI CCNNNNNNNGG 4 cut(s) 263, 283, 492, 728
BsmAI GTCTC 2 cut(s) 21, 190
BsmBI CGTCTC 1 cut(s) 21
BsmI GAATGC 1 cut(s) 272
BsnI GGCC 1 cut(s) 611
Bsp1286I GDGCHC 2 cut(s) 414, 471
Bsp143I GATC 1 cut(s) 762
Bsp19I CCATGG 1 cut(s) 612
BspACI CCGC 1 cut(s) 726
BspANI GGCC 1 cut(s) 611
BspMAI CTGCAG 1 cut(s) 772
BssECI CCNNGG 2 cut(s) 486, 612
BssMI GATC 1 cut(s) 762
BssNI GRCGYC 2 cut(s) 30, 732
BssT1I CCWWGG 2 cut(s) 486, 612
Bst4CI ACNGT 3 cut(s) 75, 282, 752
Bst6I CTCTTC 2 cut(s) 378, 572
BstACI GRCGYC 2 cut(s) 30, 732
BstC8I GCNNGC 2 cut(s) 222, 730
BstDEI CTNAG 1 cut(s) 6
BstDSI CCRYGG 1 cut(s) 612
BstENI CCTNNNNNAGG 1 cut(s) 261
BstKTI GATC 1 cut(s) 765
BstMAI GTCTC 2 cut(s) 21, 190
BstMBI GATC 1 cut(s) 762
BstMCI CGRYCG 1 cut(s) 765
BstMWI GCNNNNNNNGC 3 cut(s) 257, 767, 795
BstSFI CTRYAG 1 cut(s) 768
BstSLI GKGCMC 1 cut(s) 414
BstV1I GCAGC 5 cut(s) 190, 235, 694, 754, 782
BsuRI GGCC 1 cut(s) 611
BtgI CCRYGG 1 cut(s) 612
BtsIMutI CAGTG 1 cut(s) 374
Cac8I GCNNGC 2 cut(s) 222, 730
CseI GACGC 1 cut(s) 721
CviAII CATG 3 cut(s) 398, 580, 613
DdeI CTNAG 1 cut(s) 6
DpnI GATC 1 cut(s) 764
DpnII GATC 1 cut(s) 762
DraI TTTAAA 1 cut(s) 328
Eam1104I CTCTTC 2 cut(s) 378, 572
EarI CTCTTC 2 cut(s) 378, 572
Ecl136II GAGCTC 1 cut(s) 469
Eco130I CCWWGG 2 cut(s) 486, 612
Eco24I GRGCYC 1 cut(s) 471
Eco53kI GAGCTC 1 cut(s) 469
EcoICRI GAGCTC 1 cut(s) 469
EcoNI CCTNNNNNAGG 1 cut(s) 261
EcoRI GAATTC 2 cut(s) 92, 776
EcoT14I CCWWGG 2 cut(s) 486, 612
EcoT38I GRGCYC 1 cut(s) 471
ErhI CCWWGG 2 cut(s) 486, 612
Esp3I CGTCTC 1 cut(s) 21
FaeI CATG 3 cut(s) 401, 583, 616
FatI CATG 3 cut(s) 397, 579, 612
Fnu4HI GCNGC 5 cut(s) 179, 249, 683, 768, 771
FriOI GRGCYC 1 cut(s) 471
Fsp4HI GCNGC 5 cut(s) 179, 249, 683, 768, 771
FspBI CTAG 1 cut(s) 263
GluI GCNGC 5 cut(s) 179, 249, 683, 768, 771
HaeIII GGCC 1 cut(s) 611
HgaI GACGC 1 cut(s) 721
Hin1I GRCGYC 2 cut(s) 30, 732
Hin1II CATG 3 cut(s) 401, 583, 616
HincII GTYRAC 2 cut(s) 71, 475
HindII GTYRAC 2 cut(s) 71, 475
HindIII AAGCTT 1 cut(s) 437
HinfI GANTC 5 cut(s) 155, 551, 564, 617, 811
HphI GGTGA 2 cut(s) 517, 652
Hpy166II GTNNAC 5 cut(s) 71, 412, 475, 643, 748
Hpy188I TCNGA 6 cut(s) 21, 278, 495, 563, 691, 816
Hpy188III TCNNGA 2 cut(s) 97, 313
Hpy8I GTNNAC 5 cut(s) 71, 412, 475, 643, 748
Hpy99I CGWCG 1 cut(s) 737
HpyAV CCTTC 4 cut(s) 233, 425, 541, 598
HpyCH4III ACNGT 3 cut(s) 75, 282, 752
HpyCH4IV ACGT 2 cut(s) 30, 213
HpyCH4V TGCA 4 cut(s) 55, 88, 412, 770
HpyF10VI GCNNNNNNNGC 3 cut(s) 257, 767, 795
HpyF3I CTNAG 1 cut(s) 6
HpySE526I ACGT 2 cut(s) 30, 213
Hsp92I GRCGYC 2 cut(s) 30, 732
Hsp92II CATG 3 cut(s) 401, 583, 616
Kzo9I GATC 1 cut(s) 762
LmnI GCTCC 4 cut(s) 175, 229, 488, 758
LpnPI CCDG 6 cut(s) 74, 82, 270, 388, 692, 714
Lsp1109I GCAGC 5 cut(s) 190, 235, 694, 754, 782
LweI GCATC 1 cut(s) 75
MaeI CTAG 1 cut(s) 263
MaeII ACGT 2 cut(s) 30, 213
MaeIII GTNAC 1 cut(s) 295
MalI GATC 1 cut(s) 764
MboI GATC 1 cut(s) 762
MboII GAAGA 7 cut(s) 94, 328, 395, 559, 668, 699, 817
MhlI GDGCHC 2 cut(s) 414, 471
MluCI AATT 8 cut(s) 92, 113, 521, 541, 651, 659, 702, 776
MlyI GAGTC 1 cut(s) 558
MmeI TCCRAC 1 cut(s) 301
MnlI CCTC 7 cut(s) 72, 135, 145, 236, 379, 601, 749
MroXI GAANNNNTTC 1 cut(s) 706
MseI TTAA 2 cut(s) 288, 327
MslI CAYNNNNRTG 1 cut(s) 302
MspA1I CMGCKG 1 cut(s) 728
Mva1269I GAATGC 1 cut(s) 272
MwoI GCNNNNNNNGC 3 cut(s) 257, 767, 795
NcoI CCATGG 1 cut(s) 612
NdeII GATC 1 cut(s) 762
NlaIII CATG 3 cut(s) 401, 583, 616
NmeAIII GCCGAG 1 cut(s) 810
NmuCI GTSAC 1 cut(s) 295
OliI CACNNNNGTG 1 cut(s) 302
PcsI WCGNNNNNNNCGW 1 cut(s) 771
PctI GAATGC 1 cut(s) 272
PdmI GAANNNNTTC 1 cut(s) 706
PfeI GAWTC 4 cut(s) 155, 551, 617, 811
PkrI GCNGC 5 cut(s) 180, 250, 684, 769, 772
Ple19I CGATCG 1 cut(s) 765
PleI GAGTC 1 cut(s) 558
PpsI GAGTC 1 cut(s) 558
Psp124BI GAGCTC 1 cut(s) 471
Psp1406I AACGTT 1 cut(s) 213
PstI CTGCAG 1 cut(s) 772
PvuI CGATCG 1 cut(s) 765
RgaI GCGATCGC 1 cut(s) 765
RseI CAYNNNNRTG 1 cut(s) 302
SacI GAGCTC 1 cut(s) 471
SaqAI TTAA 2 cut(s) 288, 327
SatI GCNGC 5 cut(s) 179, 249, 683, 768, 771
Sau3AI GATC 1 cut(s) 762
SchI GAGTC 1 cut(s) 558
SduI GDGCHC 2 cut(s) 414, 471
SfaAI GCGATCGC 1 cut(s) 765
SfaNI GCATC 1 cut(s) 75
SfcI CTRYAG 1 cut(s) 768
SgfI GCGATCGC 1 cut(s) 765
SmiMI CAYNNNNRTG 1 cut(s) 302
Sse9I AATT 8 cut(s) 92, 113, 521, 541, 651, 659, 702, 776
SsiI CCGC 1 cut(s) 726
SspI AATATT 1 cut(s) 535
SspMI CTAG 1 cut(s) 263
SstI GAGCTC 1 cut(s) 471
StyI CCWWGG 2 cut(s) 486, 612
TaaI ACNGT 3 cut(s) 75, 282, 752
TaiI ACGT 2 cut(s) 33, 216
TaqI TCGA 3 cut(s) 312, 735, 780
TasI AATT 8 cut(s) 92, 113, 521, 541, 651, 659, 702, 776
TfiI GAWTC 4 cut(s) 155, 551, 617, 811
Tru1I TTAA 2 cut(s) 288, 327
Tru9I TTAA 2 cut(s) 288, 327
TscAI CASTG 1 cut(s) 381
TseFI GTSAC 1 cut(s) 295
TseI GCWGC 5 cut(s) 178, 248, 682, 767, 770
Tsp45I GTSAC 1 cut(s) 295
TspDTI ATGAA 3 cut(s) 126, 559, 824
TspRI CASTG 1 cut(s) 381
VneI GTGCAC 1 cut(s) 410
XagI CCTNNNNNAGG 1 cut(s) 261
XapI RAATTY 4 cut(s) 92, 521, 702, 776
XmnI GAANNNNTTC 1 cut(s) 706
XspI CTAG 1 cut(s) 263
ZraI GACGTC 1 cut(s) 31
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.