Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0018079

Physical Location & Seq

Genomic Coordinates Reverse (-)

6072413 .. 6073764

Gene Structure 1352 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000026791

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1149 bp

ATGGGGTCTGTGGCTCTGAACTTTGTCGGAGGAATCCCTTTCCAAGGGCTGTATGATGTAGTTAAGGTGGCTGTTCACAAAAGTAGAAAGTTTAAAATCAACCTCATAAATCTTGAATTCACACTACGCTGTTTAGAATCACGGACTCTCGAACAGATAGGAGAAAATAACATTCGACTAAATCTCCCAATCGATACAGTGGCAGAGCTTGAGAAAAAAATGAATGAGGGTAAAACGCTTGTGAAATCACTACGCCTAGAGCAAATGAGGAATGTAACTGAGCTCGTATGTTTGGCAAGACACTTCAAAGACAGACAAGATGATATGAAGAAAAGACAAGCTGAAATGGAGAAAAAAGTAGATGCATGCAACAAGCTCCATCATCAAGGGGCTGCTGATCCTGCTCTAGGAGTAGTATTCCGACAGTTAGTTGATGCTGTCATACAAGTGAAAATCGAGAACATGATGTTTAAACGCCTCCTCGACACATTCAAATCCACACTCTACTGCTTACAACCACTGATAGAAGAGGTAGCCGAACATGGCAGGATAGTGCATCTTCCAGAGCAAGAAGTGGAAAAGCTTATTATACAAATAGTGAATGGTGTGGAGCTTGTTCACAAATGCTCCAAGGTTCGTAAGCATGCCAACTACAAAAAGTATAAATTTCCTAACAAAATTTTCAATTTGGAGGAATATCTTTTCAGGCTCTTCATTGAACTCAAAGGGCAGGTAGAAAGGAATATGAAGGAGGCCATTGATTCTGCAAACAACATAGAGATGGCGATCAAGAGAATTGAAGATGAAGATTTATGTGACGTGCAGCTGCCTGAACTTCTTTCAATTGCAGTTGGATTTGATATGCTCAATATGCAAGGACTAAGAGATGTGACTGAGGAGGCTTTGTTGGACTCGGCAAGTGTTAAAGAGGAAGGAGTCAAGCAAACTGAAGGTTTATCTGACGTGCTGCCTGAACTTCTTTCACCTGCAAATGGATTGGATGTACTGAATATGCAGGGATCATTGGATCTTATTACCGCAAATATCCAAGTGGTGGTCACAGAATCGGAAGAAATAGAGGCCATTGATAATTCAACAAGGAATGTGCAGGAAGAAGATGTTGGAAATTATATCTTAAATTCCAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002229 GO:0002237 GO:0002239 GO:0002682 GO:0002831 GO:0002833 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009889 GO:0009987 GO:0010033 GO:0010112 GO:0010224 GO:0010337 GO:0010468 GO:0010556 GO:0010565 GO:0010817 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031347 GO:0031349 GO:0032101 GO:0032103 GO:0032350 GO:0042221 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043900 GO:0043902 GO:0044424 GO:0044464 GO:0045088 GO:0046885 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0062012 GO:0065007 GO:0065008 GO:0071216 GO:0071219 GO:0080090 GO:0080134 GO:0080142 GO:0097159 GO:0098542 GO:0140110 GO:1900424 GO:1900426 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Calmodulin_bind

Protein Analysis

383

Amino Acids

43.43

Weight (kDa)

5.28

Isoelectric Point (pI)

48.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPW8	PF05659	134 - 264	2.6e-21	Arabidopsis broad-spectrum mildew resistance protein RPW8

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018079)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g26420
rosa_laevigata	RLG00000026791 RLG00000026792 RLG00000034383 RLG00000034390 RLG00000034566
rosa_roxburghii	Rroxscaffold_4G00283870 Rroxscaffold_5G00352570
rosa_samantha	Rh1AG390300 Rh1AG390400
rosa_wichuraiana	Rw1G034490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	994
Acc36I	ACCTGC	2 cut(s)	721, 994
AccB7I	CCANNNNNTGG	1 cut(s)	1054
AciI	CCGC	1 cut(s)	1038
AclWI	GGATC	3 cut(s)	392, 1027, 1035
AcsI	RAATTY	4 cut(s)	116, 665, 678, 1138
AcuI	CTGAAG	1 cut(s)	969
AfaI	GTAC	1 cut(s)	1005
AfiI	CCNNNNNNNGG	4 cut(s)	44, 407, 992, 1054
AgsI	TTSAA	8 cut(s)	116, 307, 493, 685, 719, 800, 843, 1095
AjiI	CACGTC	2 cut(s)	820, 964
AjuI	GAANNNNNNNTTGG	2 cut(s)	1104, 1136
AluBI	AGCT	7 cut(s)	208, 283, 341, 376, 583, 613, 826
AluI	AGCT	7 cut(s)	208, 283, 341, 376, 583, 613, 826
Alw21I	GWGCWC	1 cut(s)	285
AlwI	GGATC	3 cut(s)	392, 1027, 1035
AoxI	GGCC	2 cut(s)	753, 1080
ApeKI	GCWGC	4 cut(s)	392, 823, 826, 967
ApoI	RAATTY	4 cut(s)	116, 665, 678, 1138
AsuHPI	GGTGA	1 cut(s)	975
BanII	GRGCYC	1 cut(s)	285
Bbv12I	GWGCWC	1 cut(s)	285
BbvI	GCAGC	4 cut(s)	379, 813, 835, 954
BccI	CCATC	2 cut(s)	387, 775
BfaI	CTAG	2 cut(s)	257, 407
BfuAI	ACCTGC	2 cut(s)	721, 994
BisI	GCNGC	4 cut(s)	393, 824, 827, 968
BlsI	GCNGC	4 cut(s)	394, 825, 828, 969
BmgBI	CACGTC	2 cut(s)	820, 964
BmsI	GCATC	3 cut(s)	352, 424, 565
BpuEI	CTTGAG	1 cut(s)	230
Bsa29I	ATCGAT	1 cut(s)	192
BsaBI	GATNNNNATC	1 cut(s)	785
BsaJI	CCNNGG	2 cut(s)	43, 630
BsaXI	ACNNNNNCTCC	6 cut(s)	168, 198, 611, 641, 890, 920
Bsc4I	CCNNNNNNNGG	4 cut(s)	44, 407, 992, 1054
Bse8I	GATNNNNATC	1 cut(s)	785
BseCI	ATCGAT	1 cut(s)	192
BseDI	CCNNGG	2 cut(s)	43, 630
BseGI	GGATG	1 cut(s)	1006
BseJI	GATNNNNATC	1 cut(s)	785
BseLI	CCNNNNNNNGG	4 cut(s)	44, 407, 992, 1054
BseMII	CTCAG	2 cut(s)	270, 885
BseRI	GAGGAG	2 cut(s)	470, 911
BseXI	GCAGC	4 cut(s)	379, 813, 835, 954
BsgI	GTGCAG	2 cut(s)	842, 1127
BshFI	GGCC	2 cut(s)	755, 1082
BshVI	ATCGAT	1 cut(s)	192
BsiHKAI	GWGCWC	1 cut(s)	285
BslI	CCNNNNNNNGG	4 cut(s)	44, 407, 992, 1054
BsnI	GGCC	2 cut(s)	755, 1082
Bsp1286I	GDGCHC	1 cut(s)	285
Bsp143I	GATC	4 cut(s)	397, 786, 1019, 1027
BspACI	CCGC	1 cut(s)	1038
BspANI	GGCC	2 cut(s)	755, 1082
BspCNI	CTCAG	2 cut(s)	271, 886
BspDI	ATCGAT	1 cut(s)	192
BspMI	ACCTGC	2 cut(s)	721, 994
BspPI	GGATC	3 cut(s)	392, 1027, 1035
BspQI	GCTCTTC	1 cut(s)	716
BssECI	CCNNGG	2 cut(s)	43, 630
BssMI	GATC	4 cut(s)	397, 786, 1019, 1027
BssT1I	CCWWGG	2 cut(s)	43, 630
Bst4CI	ACNGT	2 cut(s)	199, 426
Bst6I	CTCTTC	2 cut(s)	522, 716
BstC8I	GCNNGC	2 cut(s)	367, 645
BstDEI	CTNAG	3 cut(s)	279, 881, 894
BstENI	CCTNNNNNAGG	2 cut(s)	42, 405
BstF5I	GGATG	1 cut(s)	1006
BstKTI	GATC	4 cut(s)	400, 789, 1022, 1030
BstMBI	GATC	4 cut(s)	397, 786, 1019, 1027
BstMWI	GCNNNNNNNGC	2 cut(s)	401, 871
BstNSI	RCATGY	2 cut(s)	369, 647
BstV1I	GCAGC	4 cut(s)	379, 813, 835, 954
BstX2I	RGATCY	1 cut(s)	1027
BstYI	RGATCY	1 cut(s)	1027
Bsu15I	ATCGAT	1 cut(s)	192
BsuRI	GGCC	2 cut(s)	755, 1082
BsuTUI	ATCGAT	1 cut(s)	192
BtrI	CACGTC	2 cut(s)	820, 964
BtsCI	GGATG	1 cut(s)	1006
BtsIMutI	CAGTG	2 cut(s)	204, 518
BveI	ACCTGC	2 cut(s)	721, 994
Cac8I	GCNNGC	2 cut(s)	367, 645
ClaI	ATCGAT	1 cut(s)	192
Csp6I	GTAC	1 cut(s)	1004
CviAII	CATG	4 cut(s)	366, 463, 542, 644
CviQI	GTAC	1 cut(s)	1004
DdeI	CTNAG	3 cut(s)	279, 881, 894
DpnI	GATC	4 cut(s)	399, 788, 1021, 1029
DpnII	GATC	4 cut(s)	397, 786, 1019, 1027
DraI	TTTAAA	2 cut(s)	94, 472
Eam1104I	CTCTTC	2 cut(s)	522, 716
EarI	CTCTTC	2 cut(s)	522, 716
Ecl136II	GAGCTC	1 cut(s)	283
Eco130I	CCWWGG	2 cut(s)	43, 630
Eco24I	GRGCYC	1 cut(s)	285
Eco53kI	GAGCTC	1 cut(s)	283
Eco57I	CTGAAG	1 cut(s)	969
EcoICRI	GAGCTC	1 cut(s)	283
EcoNI	CCTNNNNNAGG	2 cut(s)	42, 405
EcoRI	GAATTC	1 cut(s)	116
EcoT14I	CCWWGG	2 cut(s)	43, 630
EcoT22I	ATGCAT	1 cut(s)	367
EcoT38I	GRGCYC	1 cut(s)	285
ErhI	CCWWGG	2 cut(s)	43, 630
FaeI	CATG	4 cut(s)	369, 466, 545, 647
FatI	CATG	4 cut(s)	365, 462, 541, 643
Fnu4HI	GCNGC	4 cut(s)	393, 824, 827, 968
FokI	GGATG	1 cut(s)	1013
FriOI	GRGCYC	1 cut(s)	285
Fsp4HI	GCNGC	4 cut(s)	393, 824, 827, 968
FspBI	CTAG	2 cut(s)	257, 407
GluI	GCNGC	4 cut(s)	393, 824, 827, 968
HaeIII	GGCC	2 cut(s)	755, 1082
Hin1II	CATG	4 cut(s)	369, 466, 545, 647
HindIII	AAGCTT	1 cut(s)	581
HinfI	GANTC	7 cut(s)	33, 137, 145, 761, 911, 936, 1064
HphI	GGTGA	1 cut(s)	975
Hpy166II	GTNNAC	2 cut(s)	76, 619
Hpy188I	TCNGA	5 cut(s)	18, 29, 422, 961, 1069
Hpy188III	TCNNGA	5 cut(s)	113, 149, 457, 563, 790
Hpy8I	GTNNAC	2 cut(s)	76, 619
HpyAV	CCTTC	3 cut(s)	742, 926, 944
HpyCH4III	ACNGT	2 cut(s)	199, 426
HpyCH4IV	ACGT	2 cut(s)	819, 963
HpyF10VI	GCNNNNNNNGC	2 cut(s)	401, 871
HpyF3I	CTNAG	3 cut(s)	279, 881, 894
HpySE526I	ACGT	2 cut(s)	819, 963
Hsp92II	CATG	4 cut(s)	369, 466, 545, 647
Kzo9I	GATC	4 cut(s)	397, 786, 1019, 1027
LguI	GCTCTTC	1 cut(s)	716
LmnI	GCTCC	3 cut(s)	381, 610, 632
Lsp1109I	GCAGC	4 cut(s)	379, 813, 835, 954
LweI	GCATC	3 cut(s)	352, 424, 565
MaeI	CTAG	2 cut(s)	257, 407
MaeII	ACGT	2 cut(s)	819, 963
MaeIII	GTNAC	4 cut(s)	274, 815, 889, 1057
MalI	GATC	4 cut(s)	399, 788, 1021, 1029
MboI	GATC	4 cut(s)	397, 786, 1019, 1027
MboII	GAAGA	9 cut(s)	340, 539, 551, 703, 812, 818, 1082, 1124, 1127
MfeI	CAATTG	1 cut(s)	843
MflI	RGATCY	1 cut(s)	1027
MhlI	GDGCHC	1 cut(s)	285
MlyI	GAGTC	3 cut(s)	139, 905, 945
MmeI	TCCRAC	5 cut(s)	7, 445, 832, 888, 1102
Mph1103I	ATGCAT	1 cut(s)	367
MseI	TTAA	6 cut(s)	63, 93, 471, 924, 1136, 1147
MslI	CAYNNNNRTG	2 cut(s)	446, 779
MspA1I	CMGCKG	1 cut(s)	826
MssI	GTTTAAAC	1 cut(s)	472
MunI	CAATTG	1 cut(s)	843
MwoI	GCNNNNNNNGC	2 cut(s)	401, 871
NdeII	GATC	4 cut(s)	397, 786, 1019, 1027
NlaIII	CATG	4 cut(s)	369, 466, 545, 647
NmeAIII	GCCGAG	1 cut(s)	893
NmuCI	GTSAC	3 cut(s)	815, 889, 1057
NsiI	ATGCAT	1 cut(s)	367
NspI	RCATGY	2 cut(s)	369, 647
PaeI	GCATGC	2 cut(s)	369, 647
PaqCI	CACCTGC	1 cut(s)	994
PciSI	GCTCTTC	1 cut(s)	716
PfeI	GAWTC	4 cut(s)	33, 137, 761, 1064
PflMI	CCANNNNNTGG	1 cut(s)	1054
PkrI	GCNGC	4 cut(s)	394, 825, 828, 969
PleI	GAGTC	3 cut(s)	139, 905, 944
PmeI	GTTTAAAC	1 cut(s)	472
PpsI	GAGTC	3 cut(s)	139, 905, 944
Psp124BI	GAGCTC	1 cut(s)	285
PsuI	RGATCY	1 cut(s)	1027
PvuII	CAGCTG	1 cut(s)	826
RsaI	GTAC	1 cut(s)	1005
RsaNI	GTAC	1 cut(s)	1004
RseI	CAYNNNNRTG	2 cut(s)	446, 779
SacI	GAGCTC	1 cut(s)	285
SapI	GCTCTTC	1 cut(s)	716
SaqAI	TTAA	6 cut(s)	63, 93, 471, 924, 1136, 1147
SatI	GCNGC	4 cut(s)	393, 824, 827, 968
Sau3AI	GATC	4 cut(s)	397, 786, 1019, 1027
SchI	GAGTC	3 cut(s)	139, 905, 945
SduI	GDGCHC	1 cut(s)	285
SfaNI	GCATC	3 cut(s)	352, 424, 565
SmiMI	CAYNNNNRTG	2 cut(s)	446, 779
SmlI	CTYRAG	1 cut(s)	209
SmoI	CTYRAG	1 cut(s)	209
SphI	GCATGC	2 cut(s)	369, 647
SsiI	CCGC	1 cut(s)	1038
SspMI	CTAG	2 cut(s)	257, 407
SstI	GAGCTC	1 cut(s)	285
StyI	CCWWGG	2 cut(s)	43, 630
TaaI	ACNGT	2 cut(s)	199, 426
TaiI	ACGT	2 cut(s)	822, 966
TaqI	TCGA	5 cut(s)	150, 175, 192, 456, 483
TatI	WGTACW	1 cut(s)	1003
TfiI	GAWTC	4 cut(s)	33, 137, 761, 1064
Tru1I	TTAA	6 cut(s)	63, 93, 471, 924, 1136, 1147
Tru9I	TTAA	6 cut(s)	63, 93, 471, 924, 1136, 1147
TscAI	CASTG	2 cut(s)	204, 525
TseFI	GTSAC	3 cut(s)	815, 889, 1057
TseI	GCWGC	4 cut(s)	392, 823, 826, 967
Tsp45I	GTSAC	3 cut(s)	815, 889, 1057
TspDTI	ATGAA	5 cut(s)	236, 341, 703, 761, 819
TspGWI	ACGGA	1 cut(s)	157
TspRI	CASTG	2 cut(s)	204, 525
Van91I	CCANNNNNTGG	1 cut(s)	1054
XagI	CCTNNNNNAGG	2 cut(s)	42, 405
XapI	RAATTY	4 cut(s)	116, 665, 678, 1138
XceI	RCATGY	2 cut(s)	369, 647
XspI	CTAG	2 cut(s)	257, 407
Zsp2I	ATGCAT	1 cut(s)	367

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.