Rh1AG390300
ERF Family

belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0018079
Physical Location & Seq
Forward (+)
61978291 .. 61978758
468 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG390300.1

Sequence Viewer

Length: 468 bp
ATGACTGTCGGTAAAGCGCTTGTGGAGATGTTATCCAAGCTTAGCATGCGGAACGTCCGCATTTGGGGCTATTGCATAGCGCCTGATTACGCAAAACAAATTAAAGATTTTACTAGGTCTGTTAGGAGCCTGGTAAAATCATTAGAATTGGAGCGAGAGAGGAATATGACTGAGCTTGTATCTCTGACAAGAGACGTCAAAAACAAACAAGATGATTTGCAGAAAAAACAAGGTCAACTGTTGAGGAAGATGCAGGAATTCTGGAAAAGAATAGATGAATTATTGGCTAAAGCAGATGGTATATTGAGGGGGCAAGAGGAATCCTATGCTATATTGATGGAGCAGCGTGAAGCAATACAGAGACTTCTTTCTAATAACGTTGAGCAAGCTCCATCATCAAGAGAAGGAGGGGCTGCTTATCCTGCTCTAGGAGTAGCATTCCGACAGTTGGTTAATGCTGTCACATAA

Protein Analysis

155

Amino Acids

17.76

Weight (kDa)

9.55

Isoelectric Point (pI)

49.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018079)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g26420
rosa_laevigata RLG00000026791 RLG00000026792 RLG00000034383 RLG00000034390 RLG00000034566
rosa_roxburghii Rroxscaffold_4G00283870 Rroxscaffold_5G00352570
rosa_samantha Rh1AG390300 Rh1AG390400
rosa_wichuraiana Rw1G034490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 198
AciI CCGC 2 cut(s) 49, 58
AclI AACGTT 1 cut(s) 378
AcsI RAATTY 1 cut(s) 257
AcyI GRCGYC 1 cut(s) 195
AfeI AGCGCT 1 cut(s) 18
AfiI CCNNNNNNNGG 3 cut(s) 64, 428, 448
AjnI CCWGG 1 cut(s) 129
AluBI AGCT 3 cut(s) 40, 175, 389
AluI AGCT 3 cut(s) 40, 175, 389
Alw26I GTCTC 2 cut(s) 186, 355
Aor51HI AGCGCT 1 cut(s) 18
ApeKI GCWGC 2 cut(s) 343, 413
ApoI RAATTY 1 cut(s) 257
AspLEI GCGC 2 cut(s) 19, 82
BbvI GCAGC 2 cut(s) 355, 400
BccI CCATC 3 cut(s) 290, 331, 400
BciT130I CCWGG 1 cut(s) 131
BcoDI GTCTC 2 cut(s) 186, 355
BfaI CTAG 2 cut(s) 114, 428
BfoI RGCGCY 2 cut(s) 20, 83
BisI GCNGC 2 cut(s) 344, 414
BlpI GCTNAGC 1 cut(s) 41
BlsI GCNGC 2 cut(s) 345, 415
Bme1390I CCNGG 1 cut(s) 131
BmiI GGNNCC 1 cut(s) 128
BmrFI CCNGG 1 cut(s) 131
BmsI GCATC 1 cut(s) 240
Bpu1102I GCTNAGC 1 cut(s) 41
BsaHI GRCGYC 1 cut(s) 195
Bsc4I CCNNNNNNNGG 3 cut(s) 64, 428, 448
BseBI CCWGG 1 cut(s) 131
BseLI CCNNNNNNNGG 3 cut(s) 64, 428, 448
BseMII CTCAG 1 cut(s) 162
BseXI GCAGC 2 cut(s) 355, 400
BslI CCNNNNNNNGG 3 cut(s) 64, 428, 448
BsmAI GTCTC 2 cut(s) 186, 355
BsmBI CGTCTC 1 cut(s) 186
BsmI GAATGC 1 cut(s) 437
Bsp1720I GCTNAGC 1 cut(s) 41
BspACI CCGC 2 cut(s) 49, 58
BspCNI CTCAG 1 cut(s) 163
BspLI GGNNCC 1 cut(s) 128
BssNI GRCGYC 1 cut(s) 195
Bst2UI CCWGG 1 cut(s) 131
Bst4CI ACNGT 3 cut(s) 7, 240, 447
BstACI GRCGYC 1 cut(s) 195
BstC8I GCNNGC 2 cut(s) 47, 387
BstDEI CTNAG 2 cut(s) 41, 171
BstENI CCTNNNNNAGG 1 cut(s) 426
BstH2I RGCGCY 2 cut(s) 20, 83
BstHHI GCGC 2 cut(s) 19, 82
BstMAI GTCTC 2 cut(s) 186, 355
BstMWI GCNNNNNNNGC 3 cut(s) 46, 66, 422
BstNI CCWGG 1 cut(s) 131
BstNSI RCATGY 1 cut(s) 49
BstSCI CCNGG 1 cut(s) 129
BstV1I GCAGC 2 cut(s) 355, 400
Cac8I GCNNGC 2 cut(s) 47, 387
CfoI GCGC 2 cut(s) 19, 82
CviAII CATG 1 cut(s) 46
CviJI RGCY 7 cut(s) 40, 69, 129, 175, 287, 389, 413
CviKI_1 RGCY 7 cut(s) 40, 69, 129, 175, 287, 389, 413
DdeI CTNAG 2 cut(s) 41, 171
Eco47III AGCGCT 1 cut(s) 18
EcoNI CCTNNNNNAGG 1 cut(s) 426
EcoRI GAATTC 1 cut(s) 257
EcoRII CCWGG 1 cut(s) 129
Esp3I CGTCTC 1 cut(s) 186
FaeI CATG 1 cut(s) 49
FaiI YATR 7 cut(s) 47, 77, 167, 302, 327, 332, 466
FatI CATG 1 cut(s) 45
Fnu4HI GCNGC 2 cut(s) 344, 414
Fsp4HI GCNGC 2 cut(s) 344, 414
FspBI CTAG 2 cut(s) 114, 428
GlaI GCGC 2 cut(s) 18, 81
GluI GCNGC 2 cut(s) 344, 414
HaeII RGCGCY 2 cut(s) 20, 83
HhaI GCGC 2 cut(s) 19, 82
Hin1I GRCGYC 1 cut(s) 195
Hin1II CATG 1 cut(s) 49
Hin6I GCGC 2 cut(s) 17, 80
HinP1I GCGC 2 cut(s) 17, 80
HincII GTYRAC 1 cut(s) 236
HindII GTYRAC 1 cut(s) 236
HindIII AAGCTT 1 cut(s) 38
HinfI GANTC 1 cut(s) 320
Hpy166II GTNNAC 1 cut(s) 236
Hpy188I TCNGA 2 cut(s) 186, 443
Hpy188III TCNNGA 2 cut(s) 262, 399
Hpy8I GTNNAC 1 cut(s) 236
HpyAV CCTTC 1 cut(s) 398
HpyCH4III ACNGT 3 cut(s) 7, 240, 447
HpyCH4IV ACGT 3 cut(s) 54, 195, 378
HpyCH4V TGCA 3 cut(s) 75, 220, 253
HpyF10VI GCNNNNNNNGC 3 cut(s) 46, 66, 422
HpyF3I CTNAG 2 cut(s) 41, 171
HpySE526I ACGT 3 cut(s) 54, 195, 378
Hsp92I GRCGYC 1 cut(s) 195
Hsp92II CATG 1 cut(s) 49
HspAI GCGC 2 cut(s) 17, 80
LmnI GCTCC 4 cut(s) 126, 151, 340, 394
LpnPI CCDG 6 cut(s) 96, 116, 143, 239, 247, 435
Lsp1109I GCAGC 2 cut(s) 355, 400
LweI GCATC 1 cut(s) 240
MaeI CTAG 2 cut(s) 114, 428
MaeII ACGT 3 cut(s) 54, 195, 378
MaeIII GTNAC 1 cut(s) 460
MboII GAAGA 1 cut(s) 259
MluCI AATT 4 cut(s) 99, 146, 257, 278
MmeI TCCRAC 1 cut(s) 466
MnlI CCTC 5 cut(s) 153, 237, 300, 310, 401
MseI TTAA 2 cut(s) 102, 453
MspR9I CCNGG 1 cut(s) 131
Mva1269I GAATGC 1 cut(s) 437
MvaI CCWGG 1 cut(s) 131
MwoI GCNNNNNNNGC 3 cut(s) 46, 66, 422
NlaIII CATG 1 cut(s) 49
NlaIV GGNNCC 1 cut(s) 128
NmuCI GTSAC 1 cut(s) 460
NspI RCATGY 1 cut(s) 49
PaeI GCATGC 1 cut(s) 49
PctI GAATGC 1 cut(s) 437
PfeI GAWTC 1 cut(s) 320
PkrI GCNGC 2 cut(s) 345, 415
Psp1406I AACGTT 1 cut(s) 378
Psp6I CCWGG 1 cut(s) 129
PspGI CCWGG 1 cut(s) 129
PspN4I GGNNCC 1 cut(s) 128
SaqAI TTAA 2 cut(s) 102, 453
SatI GCNGC 2 cut(s) 344, 414
ScrFI CCNGG 1 cut(s) 131
SetI ASST 8 cut(s) 42, 57, 119, 177, 198, 235, 381, 391
SfaNI GCATC 1 cut(s) 240
SphI GCATGC 1 cut(s) 49
Sse9I AATT 4 cut(s) 99, 146, 257, 278
SsiI CCGC 2 cut(s) 49, 58
SspMI CTAG 2 cut(s) 114, 428
StyD4I CCNGG 1 cut(s) 129
TaaI ACNGT 3 cut(s) 7, 240, 447
TaiI ACGT 3 cut(s) 57, 198, 381
TasI AATT 4 cut(s) 99, 146, 257, 278
TfiI GAWTC 1 cut(s) 320
Tru1I TTAA 2 cut(s) 102, 453
Tru9I TTAA 2 cut(s) 102, 453
TseFI GTSAC 1 cut(s) 460
TseI GCWGC 2 cut(s) 343, 413
Tsp45I GTSAC 1 cut(s) 460
TspDTI ATGAA 1 cut(s) 291
XagI CCTNNNNNAGG 1 cut(s) 426
XapI RAATTY 1 cut(s) 257
XceI RCATGY 1 cut(s) 49
XspI CTAG 2 cut(s) 114, 428
ZraI GACGTC 1 cut(s) 196
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.