Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0018079

Physical Location & Seq

Genomic Coordinates Forward (+)

41786377 .. 41786874

Gene Structure 498 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000034383

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGAATGTGGGTAAAGAGCTTGTGGTGAAGTTATCTAAGCTTAGCATGTGGAACATCTGCCCATGGGGTAATTGTTGCAACTGCTTAGGGCCTGATTACGCAAAAGAACTTGATGATTTGGATAGGCATCTTAGAAGCTTGTTAGAATCACTACTGGTGGAGCAGCAAAGGAGGAATGTGACCGAGCTTGTATATTTGGGAAGATACGCCAAAGACACACAAGATGGTATGGAGAAAAAACAAGGTGAATTGGAGAAAAAAGTAAGTGATGTATTGAAGGGGCAGCAGGAATCCAATGCTATATCGATGGAGCAGCGTGAAGCAATACAAAGACTTGTTCTTAATAGCGTGCAACAACAAGCTCCATCATCAAGCGGAGGAGGGGCTGCTGATCCTACTCTAGGAATAGCATTCCAACAGTTGGTTGATGATGTCACAGAAGTAGAAGTCAAGAGCATGATGCTTAAACGGCTCCTCGACATTGCTTACAACCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0007275 GO:0008150 GO:0009555 GO:0032501 GO:0032502 GO:0048229 GO:0048856

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

PPR Pkinase Pkinase_Tyr

Protein Analysis

166

Amino Acids

18.52

Weight (kDa)

5.27

Isoelectric Point (pI)

39.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018079)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g26420
rosa_laevigata	RLG00000026791 RLG00000026792 RLG00000034383 RLG00000034390 RLG00000034566
rosa_roxburghii	Rroxscaffold_4G00283870 Rroxscaffold_5G00352570
rosa_samantha	Rh1AG390300 Rh1AG390400
rosa_wichuraiana	Rw1G034490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	421
AciI	CCGC	1 cut(s)	375
AclWI	GGATC	1 cut(s)	386
AfiI	CCNNNNNNNGG	2 cut(s)	401, 421
AgsI	TTSAA	1 cut(s)	277
AluBI	AGCT	5 cut(s)	19, 40, 138, 187, 362
AluI	AGCT	5 cut(s)	19, 40, 138, 187, 362
AlwI	GGATC	1 cut(s)	386
AoxI	GGCC	1 cut(s)	89
ApeKI	GCWGC	4 cut(s)	163, 283, 313, 386
AspS9I	GGNCC	1 cut(s)	89
AsuHPI	GGTGA	2 cut(s)	37, 257
BbvI	GCAGC	4 cut(s)	175, 295, 325, 373
BccI	CCATC	3 cut(s)	218, 301, 373
BceAI	ACGGC	1 cut(s)	485
BfaI	CTAG	1 cut(s)	401
BisI	GCNGC	4 cut(s)	164, 284, 314, 387
BlpI	GCTNAGC	1 cut(s)	41
BlsI	GCNGC	4 cut(s)	165, 285, 315, 388
BmgT120I	GGNCC	1 cut(s)	89
BmiI	GGNNCC	1 cut(s)	473
BmsI	GCATC	2 cut(s)	136, 450
Bpu10I	CCTNAGC	1 cut(s)	85
Bpu1102I	GCTNAGC	1 cut(s)	41
Bsa29I	ATCGAT	1 cut(s)	305
BsaBI	GATNNNNATC	1 cut(s)	126
BsaJI	CCNNGG	1 cut(s)	62
Bsc4I	CCNNNNNNNGG	2 cut(s)	401, 421
Bse1I	ACTGG	1 cut(s)	159
Bse3DI	GCAATG	1 cut(s)	480
Bse8I	GATNNNNATC	1 cut(s)	126
BseCI	ATCGAT	1 cut(s)	305
BseDI	CCNNGG	1 cut(s)	62
BseJI	GATNNNNATC	1 cut(s)	126
BseLI	CCNNNNNNNGG	2 cut(s)	401, 421
BseMI	GCAATG	1 cut(s)	480
BseNI	ACTGG	1 cut(s)	159
BseRI	GAGGAG	2 cut(s)	393, 464
BseXI	GCAGC	4 cut(s)	175, 295, 325, 373
BshFI	GGCC	1 cut(s)	91
BshVI	ATCGAT	1 cut(s)	305
BslI	CCNNNNNNNGG	2 cut(s)	401, 421
BsmI	GAATGC	1 cut(s)	410
BsnI	GGCC	1 cut(s)	91
Bsp143I	GATC	1 cut(s)	391
Bsp1720I	GCTNAGC	1 cut(s)	41
Bsp19I	CCATGG	1 cut(s)	62
BspACI	CCGC	1 cut(s)	375
BspANI	GGCC	1 cut(s)	91
BspDI	ATCGAT	1 cut(s)	305
BspLI	GGNNCC	1 cut(s)	473
BspPI	GGATC	1 cut(s)	386
BsrDI	GCAATG	1 cut(s)	480
BsrI	ACTGG	1 cut(s)	159
BssECI	CCNNGG	1 cut(s)	62
BssMI	GATC	1 cut(s)	391
BssT1I	CCWWGG	1 cut(s)	62
Bst4CI	ACNGT	1 cut(s)	420
BstC8I	GCNNGC	1 cut(s)	350
BstDEI	CTNAG	4 cut(s)	36, 41, 85, 131
BstDSI	CCRYGG	1 cut(s)	62
BstENI	CCTNNNNNAGG	1 cut(s)	399
BstKTI	GATC	1 cut(s)	394
BstMBI	GATC	1 cut(s)	391
BstMWI	GCNNNNNNNGC	1 cut(s)	469
BstNSI	RCATGY	1 cut(s)	49
BstV1I	GCAGC	4 cut(s)	175, 295, 325, 373
Bsu15I	ATCGAT	1 cut(s)	305
BsuRI	GGCC	1 cut(s)	91
BsuTUI	ATCGAT	1 cut(s)	305
BtgI	CCRYGG	1 cut(s)	62
BtsIMutI	CAGTG	1 cut(s)	493
Cac8I	GCNNGC	1 cut(s)	350
Cfr13I	GGNCC	1 cut(s)	89
ClaI	ATCGAT	1 cut(s)	305
CviAII	CATG	3 cut(s)	46, 63, 457
CviJI	RGCY	8 cut(s)	19, 40, 91, 138, 187, 362, 386, 472
CviKI_1	RGCY	8 cut(s)	19, 40, 91, 138, 187, 362, 386, 472
DdeI	CTNAG	4 cut(s)	36, 41, 85, 131
DpnI	GATC	1 cut(s)	393
DpnII	GATC	1 cut(s)	391
Eco130I	CCWWGG	1 cut(s)	62
EcoNI	CCTNNNNNAGG	1 cut(s)	399
EcoO109I	RGGNCCY	1 cut(s)	89
EcoT14I	CCWWGG	1 cut(s)	62
ErhI	CCWWGG	1 cut(s)	62
FaeI	CATG	3 cut(s)	49, 66, 460
FaiI	YATR	6 cut(s)	47, 64, 193, 230, 302, 458
FatI	CATG	3 cut(s)	45, 62, 456
Fnu4HI	GCNGC	4 cut(s)	164, 284, 314, 387
Fsp4HI	GCNGC	4 cut(s)	164, 284, 314, 387
FspBI	CTAG	1 cut(s)	401
GluI	GCNGC	4 cut(s)	164, 284, 314, 387
HaeIII	GGCC	1 cut(s)	91
Hin1II	CATG	3 cut(s)	49, 66, 460
HindIII	AAGCTT	2 cut(s)	38, 136
HinfI	GANTC	2 cut(s)	146, 290
HphI	GGTGA	2 cut(s)	37, 257
Hpy188III	TCNNGA	1 cut(s)	451
HpyAV	CCTTC	1 cut(s)	271
HpyCH4III	ACNGT	1 cut(s)	420
HpyCH4V	TGCA	2 cut(s)	78, 352
HpyF10VI	GCNNNNNNNGC	1 cut(s)	469
HpyF3I	CTNAG	4 cut(s)	36, 41, 85, 131
Hsp92II	CATG	3 cut(s)	49, 66, 460
Kzo9I	GATC	1 cut(s)	391
LmnI	GCTCC	4 cut(s)	160, 310, 367, 477
LpnPI	CCDG	3 cut(s)	105, 140, 272
Lsp1109I	GCAGC	4 cut(s)	175, 295, 325, 373
LweI	GCATC	2 cut(s)	136, 450
MaeI	CTAG	1 cut(s)	401
MaeIII	GTNAC	2 cut(s)	178, 433
MalI	GATC	1 cut(s)	393
MboI	GATC	1 cut(s)	391
MboII	GAAGA	1 cut(s)	213
MluCI	AATT	2 cut(s)	70, 248
MmeI	TCCRAC	1 cut(s)	439
MnlI	CCTC	4 cut(s)	165, 371, 374, 485
MseI	TTAA	2 cut(s)	342, 465
Mva1269I	GAATGC	1 cut(s)	410
MwoI	GCNNNNNNNGC	1 cut(s)	469
NcoI	CCATGG	1 cut(s)	62
NdeII	GATC	1 cut(s)	391
NlaIII	CATG	3 cut(s)	49, 66, 460
NlaIV	GGNNCC	1 cut(s)	473
NmuCI	GTSAC	2 cut(s)	178, 433
NspI	RCATGY	1 cut(s)	49
PctI	GAATGC	1 cut(s)	410
PfeI	GAWTC	2 cut(s)	146, 290
PflMI	CCANNNNNTGG	1 cut(s)	421
PkrI	GCNGC	4 cut(s)	165, 285, 315, 388
PspN4I	GGNNCC	1 cut(s)	473
PspPI	GGNCC	1 cut(s)	89
SaqAI	TTAA	2 cut(s)	342, 465
SatI	GCNGC	4 cut(s)	164, 284, 314, 387
Sau3AI	GATC	1 cut(s)	391
Sau96I	GGNCC	1 cut(s)	89
SetI	ASST	6 cut(s)	21, 42, 140, 189, 247, 364
SfaNI	GCATC	2 cut(s)	136, 450
Sse9I	AATT	2 cut(s)	70, 248
SsiI	CCGC	1 cut(s)	375
SspMI	CTAG	1 cut(s)	401
StyI	CCWWGG	1 cut(s)	62
TaaI	ACNGT	1 cut(s)	420
TaqI	TCGA	2 cut(s)	305, 477
TaqII	GACCGA	1 cut(s)	197
TasI	AATT	2 cut(s)	70, 248
TfiI	GAWTC	2 cut(s)	146, 290
Tru1I	TTAA	2 cut(s)	342, 465
Tru9I	TTAA	2 cut(s)	342, 465
TseFI	GTSAC	2 cut(s)	178, 433
TseI	GCWGC	4 cut(s)	163, 283, 313, 386
Tsp45I	GTSAC	2 cut(s)	178, 433
TspDTI	ATGAA	1 cut(s)	17
Van91I	CCANNNNNTGG	1 cut(s)	421
XagI	CCTNNNNNAGG	1 cut(s)	399
XceI	RCATGY	1 cut(s)	49
XspI	CTAG	1 cut(s)	401

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.