Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0011862

Physical Location & Seq

Genomic Coordinates Forward (+)

20176182 .. 20178057

Gene Structure 1876 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g26820.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGGGAGATCGAGACGAGAGCCGTTCAAGCTCATTTCCGATGGGGAAGACTGCACAAGAGACGGGCTTGCCCTACGTGCCCGAGTGTTATGTGATTCCAACTTCACACCGTGCCAGCTTAACTCCAGCAGTTGCCAATGTACCCACCATTGATTTTGGTAAGCTCAAGCAGGGTTCTGATGAAGAACGAGCCACTGTAATCAATGAGATTAGAACTGCGTGTCGTGAACTTGGATTCTTTCAAATTATCAACCATGGAATCCCTCAATCGTTGCTCGACGGGGCGCTGGCTGTGGCTTCGGGGTTTTTCGAGTTGCCTAATTCAGAGAAGGCAAAGTTCATGTCTAATGATGTTCACAAACCAGTGAGGTATGGAACAAGCTTCAAAGATGGAGTTGATAAGATTCAATTCTGGAGGGTCTTCCTCAAACATTATGCTCACCCCTTGGAAAATTGGATCGATTCTTGGCCTAACAATCCACCCAGCTACAGGGAAACCATGGGCGAGTACTGCAGACAAGTAATGAAACTGAGCTTGGAAGTAACAAGTGCCATCACTGAGAGCCTAGGCATAGGTCCAACTTACTTAACCAAGAAAATGGAAAACGGGATGCAAGTGATTACAGTCAATGGCTACCCACCGTGCCCCAGGCCAGAAATGGCGCTAGGGTTGCCGCCTCATTCGGACTACAGCTGCTTCACCATTGTGCTTCAGAGCTTCGCCGGACTGGAAGTCATGGACGTCGGGGACGGAAAATGGAAACTAATTCCGAACCTTGAGACTGCTCTTCAAGTTCATGTGGGTGACCATTTTGAGGTACTAAGCAATGGTTTGTACAAGAGTGTTGTGCACAGGGCGACACTGAACGGTGAAAGGACCAGAATCTCCATTGCTAGCTTACACAGCTTGGGAATTGATGAGAAGATGAAGACCGCTGAGGAGCTTGTGAGTGAAGAACAGCCTGCGAAGTATAGAGAAAGTAGCTTCGGAGATTTTCTGAACTTTCTCTCAGGTAATGATATAGCTGAGGGATCCAGCTTCCTCAACTCACTCAAACTAGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0010150 GO:0016491 GO:0016679 GO:0016682 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0055114 GO:0090693 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

355

Amino Acids

39.29

Weight (kDa)

5.63

Isoelectric Point (pI)

33.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	47 - 158	2.5e-26	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	206 - 300	1.3e-23	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011862)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07480 AT5G07480
fragaria_vesca	FvH4_7g26820 FvH4_7g30770 FvH4_7g30770
malus_domestica	MD01G1176500.v1.1
prunus_persica	Prupe.2G271600_v2.0.a1
pyrus_communis	pycom01g18720
rosa_chinensis	RchiOBHm_Chr1g0373511
rosa_laevigata	RLG00000026820
rosa_multiflora	Rmu_co8362229.1_g000001 Rmu_sc0002860.1_g000008
rosa_roxburghii	Rroxscaffold_4G00284190
rosa_rugosa	Rorug01G0377800
rosa_samantha	Rh1AG387100 Rh1BG351500 Rh1CG364200 Rh1DG381900
rosa_wichuraiana	Rw1G034820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	744
AciI	CCGC	2 cut(s)	674, 933
AclWI	GGATC	3 cut(s)	464, 1026, 1039
AcuI	CTGAAG	1 cut(s)	695
AcyI	GRCGYC	1 cut(s)	741
AdeI	CACNNNGTG	1 cut(s)	110
AfaI	GTAC	4 cut(s)	141, 509, 819, 836
AfiI	CCNNNNNNNGG	2 cut(s)	489, 814
AgsI	TTSAA	5 cut(s)	27, 242, 385, 407, 791
AhdI	GACNNNNNGTC	1 cut(s)	731
AjnI	CCWGG	1 cut(s)	647
AjuI	GAANNNNNNNTTGG	2 cut(s)	518, 550
AleI	CACNNNNGTG	1 cut(s)	704
Alw21I	GWGCWC	1 cut(s)	852
Alw26I	GTCTC	3 cut(s)	6, 53, 773
Alw44I	GTGCAC	1 cut(s)	848
AlwI	GGATC	3 cut(s)	464, 1026, 1039
Ama87I	CYCGRG	1 cut(s)	80
AoxI	GGCC	2 cut(s)	467, 650
ApaLI	GTGCAC	1 cut(s)	848
ApeKI	GCWGC	1 cut(s)	693
ArsI	GACNNNNNNTTYG	2 cut(s)	326, 358
AspA2I	CCTAGG	1 cut(s)	565
AspLEI	GCGC	2 cut(s)	286, 664
AspS9I	GGNCC	2 cut(s)	575, 876
AsuHPI	GGTGA	4 cut(s)	431, 691, 815, 881
AsuNHI	GCTAGC	1 cut(s)	893
AvaI	CYCGRG	1 cut(s)	80
AvaII	GGWCC	2 cut(s)	575, 876
AvrII	CCTAGG	1 cut(s)	565
BaeGI	GKGCMC	3 cut(s)	81, 647, 852
BamHI	GGATCC	1 cut(s)	1031
BbsI	GAAGAC	3 cut(s)	53, 412, 935
Bbv12I	GWGCWC	1 cut(s)	852
BbvCI	CCTCAGC	2 cut(s)	936, 1026
BbvI	GCAGC	1 cut(s)	680
BccI	CCATC	3 cut(s)	34, 383, 560
BceAI	ACGGC	1 cut(s)	6
BciT130I	CCWGG	1 cut(s)	649
BcoDI	GTCTC	3 cut(s)	6, 53, 773
BfaI	CTAG	4 cut(s)	566, 665, 894, 1058
BfmI	CTRYAG	3 cut(s)	487, 511, 688
BfoI	RGCGCY	2 cut(s)	287, 665
BisI	GCNGC	2 cut(s)	674, 694
BlnI	CCTAGG	1 cut(s)	565
BlsI	GCNGC	2 cut(s)	675, 695
BmcAI	AGTACT	1 cut(s)	509
Bme1390I	CCNGG	1 cut(s)	649
Bme18I	GGWCC	2 cut(s)	575, 876
BmeRI	GACNNNNNGTC	1 cut(s)	731
BmeT110I	CYCGRG	1 cut(s)	80
BmgT120I	GGNCC	2 cut(s)	575, 876
BmiI	GGNNCC	1 cut(s)	1033
BmrFI	CCNGG	1 cut(s)	649
BmsI	GCATC	1 cut(s)	600
BmtI	GCTAGC	1 cut(s)	897
BpiI	GAAGAC	3 cut(s)	53, 412, 935
BpmI	CTGGAG	2 cut(s)	108, 433
Bpu10I	CCTNAGC	2 cut(s)	936, 1026
BpuEI	CTTGAG	2 cut(s)	149, 797
Bsa29I	ATCGAT	1 cut(s)	459
BsaAI	YACGTR	1 cut(s)	76
BsaHI	GRCGYC	1 cut(s)	741
BsaJI	CCNNGG	5 cut(s)	253, 444, 498, 565, 647
Bsc4I	CCNNNNNNNGG	2 cut(s)	489, 814
Bse1I	ACTGG	2 cut(s)	362, 732
Bse3DI	GCAATG	2 cut(s)	832, 888
BseBI	CCWGG	1 cut(s)	649
BseCI	ATCGAT	1 cut(s)	459
BseDI	CCNNGG	5 cut(s)	253, 444, 498, 565, 647
BseGI	GGATG	1 cut(s)	615
BseLI	CCNNNNNNNGG	2 cut(s)	489, 814
BseMI	GCAATG	2 cut(s)	832, 888
BseMII	CTCAG	5 cut(s)	521, 549, 927, 1017, 1023
BseNI	ACTGG	2 cut(s)	362, 732
BseRI	GAGGAG	1 cut(s)	953
BseSI	GKGCMC	3 cut(s)	81, 647, 852
BseXI	GCAGC	1 cut(s)	680
BseYI	CCCAGC	1 cut(s)	482
BsgI	GTGCAG	1 cut(s)	36
BshFI	GGCC	2 cut(s)	469, 652
BshVI	ATCGAT	1 cut(s)	459
BsiHKAI	GWGCWC	1 cut(s)	852
BsiHKCI	CYCGRG	1 cut(s)	80
BsiSI	CCGG	1 cut(s)	723
BslFI	GGGAC	1 cut(s)	761
BslI	CCNNNNNNNGG	2 cut(s)	489, 814
BsmAI	GTCTC	3 cut(s)	6, 53, 773
BsmBI	CGTCTC	2 cut(s)	6, 53
BsmFI	GGGAC	1 cut(s)	761
BsnI	GGCC	2 cut(s)	469, 652
BsoBI	CYCGRG	1 cut(s)	80
Bsp1286I	GDGCHC	3 cut(s)	81, 647, 852
Bsp1407I	TGTACA	1 cut(s)	834
Bsp143I	GATC	3 cut(s)	7, 456, 1031
Bsp19I	CCATGG	2 cut(s)	253, 498
BspACI	CCGC	2 cut(s)	674, 933
BspANI	GGCC	2 cut(s)	469, 652
BspCNI	CTCAG	5 cut(s)	522, 550, 928, 1018, 1022
BspDI	ATCGAT	1 cut(s)	459
BspLI	GGNNCC	1 cut(s)	1033
BspMAI	CTGCAG	1 cut(s)	515
BspOI	GCTAGC	1 cut(s)	897
BspPI	GGATC	3 cut(s)	464, 1026, 1039
BspQI	GCTCTTC	1 cut(s)	792
BsrDI	GCAATG	2 cut(s)	832, 888
BsrGI	TGTACA	1 cut(s)	834
BsrI	ACTGG	2 cut(s)	362, 732
BssECI	CCNNGG	5 cut(s)	253, 444, 498, 565, 647
BssMI	GATC	3 cut(s)	7, 456, 1031
BssNI	GRCGYC	1 cut(s)	741
BssT1I	CCWWGG	4 cut(s)	253, 444, 498, 565
Bst2UI	CCWGG	1 cut(s)	649
Bst4CI	ACNGT	5 cut(s)	110, 196, 625, 642, 869
Bst6I	CTCTTC	1 cut(s)	792
BstACI	GRCGYC	1 cut(s)	741
BstAUI	TGTACA	1 cut(s)	834
BstBAI	YACGTR	1 cut(s)	76
BstC8I	GCNNGC	5 cut(s)	68, 115, 288, 895, 963
BstDEI	CTNAG	6 cut(s)	530, 558, 821, 936, 1009, 1026
BstDSI	CCRYGG	2 cut(s)	253, 498
BstEII	GGTNACC	1 cut(s)	803
BstF5I	GGATG	1 cut(s)	615
BstH2I	RGCGCY	2 cut(s)	287, 665
BstHHI	GCGC	2 cut(s)	286, 664
BstKTI	GATC	3 cut(s)	10, 459, 1034
BstMAI	GTCTC	3 cut(s)	6, 53, 773
BstMBI	GATC	3 cut(s)	7, 456, 1031
BstMWI	GCNNNNNNNGC	5 cut(s)	27, 76, 510, 670, 903
BstNI	CCWGG	1 cut(s)	649
BstPI	GGTNACC	1 cut(s)	803
BstSCI	CCNGG	1 cut(s)	647
BstSFI	CTRYAG	3 cut(s)	487, 511, 688
BstSLI	GKGCMC	3 cut(s)	81, 647, 852
BstV1I	GCAGC	1 cut(s)	680
BstV2I	GAAGAC	3 cut(s)	53, 412, 935
BstX2I	RGATCY	1 cut(s)	1031
BstXI	CCANNNNNNTGG	1 cut(s)	598
BstYI	RGATCY	1 cut(s)	1031
Bsu15I	ATCGAT	1 cut(s)	459
BsuRI	GGCC	2 cut(s)	469, 652
BsuTUI	ATCGAT	1 cut(s)	459
BtgI	CCRYGG	2 cut(s)	253, 498
BtsCI	GGATG	1 cut(s)	615
BtsIMutI	CAGTG	4 cut(s)	192, 369, 555, 860
Cac8I	GCNNGC	5 cut(s)	68, 115, 288, 895, 963
CfoI	GCGC	2 cut(s)	286, 664
Cfr13I	GGNCC	2 cut(s)	575, 876
ClaI	ATCGAT	1 cut(s)	459
Csp6I	GTAC	4 cut(s)	140, 508, 818, 835
CviAII	CATG	5 cut(s)	254, 340, 499, 736, 797
CviQI	GTAC	4 cut(s)	140, 508, 818, 835
DdeI	CTNAG	6 cut(s)	530, 558, 821, 936, 1009, 1026
DpnI	GATC	3 cut(s)	9, 458, 1033
DpnII	GATC	3 cut(s)	7, 456, 1031
DraIII	CACNNNGTG	1 cut(s)	110
DriI	GACNNNNNGTC	1 cut(s)	731
Eam1104I	CTCTTC	1 cut(s)	792
Eam1105I	GACNNNNNGTC	1 cut(s)	731
EarI	CTCTTC	1 cut(s)	792
Eco130I	CCWWGG	4 cut(s)	253, 444, 498, 565
Eco47I	GGWCC	2 cut(s)	575, 876
Eco57I	CTGAAG	1 cut(s)	695
Eco88I	CYCGRG	1 cut(s)	80
Eco91I	GGTNACC	1 cut(s)	803
EcoO65I	GGTNACC	1 cut(s)	803
EcoRII	CCWGG	1 cut(s)	647
EcoT14I	CCWWGG	4 cut(s)	253, 444, 498, 565
ErhI	CCWWGG	4 cut(s)	253, 444, 498, 565
Esp3I	CGTCTC	2 cut(s)	6, 53
FaeI	CATG	5 cut(s)	257, 343, 502, 739, 800
FaqI	GGGAC	1 cut(s)	761
FatI	CATG	5 cut(s)	253, 339, 498, 735, 796
Fnu4HI	GCNGC	2 cut(s)	674, 694
FokI	GGATG	1 cut(s)	622
Fsp4HI	GCNGC	2 cut(s)	674, 694
FspBI	CTAG	4 cut(s)	566, 665, 894, 1058
GlaI	GCGC	2 cut(s)	285, 663
GluI	GCNGC	2 cut(s)	674, 694
GsaI	CCCAGC	1 cut(s)	486
GsuI	CTGGAG	2 cut(s)	108, 433
HaeII	RGCGCY	2 cut(s)	287, 665
HaeIII	GGCC	2 cut(s)	469, 652
HapII	CCGG	1 cut(s)	723
HhaI	GCGC	2 cut(s)	286, 664
Hin1I	GRCGYC	1 cut(s)	741
Hin1II	CATG	5 cut(s)	257, 343, 502, 739, 800
Hin6I	GCGC	2 cut(s)	284, 662
HinP1I	GCGC	2 cut(s)	284, 662
HindIII	AAGCTT	1 cut(s)	379
HinfI	GANTC	6 cut(s)	94, 234, 258, 403, 461, 882
HpaII	CCGG	1 cut(s)	723
HphI	GGTGA	4 cut(s)	431, 691, 815, 881
Hpy166II	GTNNAC	3 cut(s)	227, 355, 850
Hpy188I	TCNGA	8 cut(s)	39, 178, 325, 685, 714, 771, 989, 999
Hpy188III	TCNNGA	3 cut(s)	11, 224, 412
Hpy8I	GTNNAC	3 cut(s)	227, 355, 850
Hpy99I	CGWCG	2 cut(s)	281, 746
HpyAV	CCTTC	1 cut(s)	322
HpyCH4III	ACNGT	5 cut(s)	110, 196, 625, 642, 869
HpyCH4IV	ACGT	2 cut(s)	75, 741
HpyCH4V	TGCA	4 cut(s)	53, 513, 613, 850
HpyF10VI	GCNNNNNNNGC	5 cut(s)	27, 76, 510, 670, 903
HpyF3I	CTNAG	6 cut(s)	530, 558, 821, 936, 1009, 1026
HpySE526I	ACGT	2 cut(s)	75, 741
Hsp92I	GRCGYC	1 cut(s)	741
Hsp92II	CATG	5 cut(s)	257, 343, 502, 739, 800
HspAI	GCGC	2 cut(s)	284, 662
Kzo9I	GATC	3 cut(s)	7, 456, 1031
LguI	GCTCTTC	1 cut(s)	792
LmnI	GCTCC	1 cut(s)	940
Lsp1109I	GCAGC	1 cut(s)	680
LweI	GCATC	1 cut(s)	600
MaeI	CTAG	4 cut(s)	566, 665, 894, 1058
MaeII	ACGT	2 cut(s)	75, 741
MaeIII	GTNAC	2 cut(s)	541, 803
MalI	GATC	3 cut(s)	9, 458, 1033
MboI	GATC	3 cut(s)	7, 456, 1031
MboII	GAAGA	7 cut(s)	58, 194, 412, 779, 934, 940, 965
MflI	RGATCY	1 cut(s)	1031
MhlI	GDGCHC	3 cut(s)	81, 647, 852
MluCI	AATT	6 cut(s)	243, 319, 407, 451, 765, 912
MmeI	TCCRAC	2 cut(s)	122, 602
MnlI	CCTC	9 cut(s)	273, 360, 408, 434, 687, 808, 931, 1021, 1052
MseI	TTAA	2 cut(s)	119, 587
MslI	CAYNNNNRTG	2 cut(s)	704, 801
MspA1I	CMGCKG	2 cut(s)	693, 935
MspI	CCGG	1 cut(s)	723
MspR9I	CCNGG	1 cut(s)	649
MvaI	CCWGG	1 cut(s)	649
MwoI	GCNNNNNNNGC	5 cut(s)	27, 76, 510, 670, 903
NcoI	CCATGG	2 cut(s)	253, 498
NdeII	GATC	3 cut(s)	7, 456, 1031
NheI	GCTAGC	1 cut(s)	893
NlaIII	CATG	5 cut(s)	257, 343, 502, 739, 800
NlaIV	GGNNCC	1 cut(s)	1033
NmuCI	GTSAC	1 cut(s)	803
OliI	CACNNNNGTG	1 cut(s)	704
PciSI	GCTCTTC	1 cut(s)	792
PfeI	GAWTC	6 cut(s)	94, 234, 258, 403, 461, 882
PkrI	GCNGC	2 cut(s)	675, 695
Ppu21I	YACGTR	1 cut(s)	76
Psp6I	CCWGG	1 cut(s)	647
PspEI	GGTNACC	1 cut(s)	803
PspFI	CCCAGC	1 cut(s)	482
PspGI	CCWGG	1 cut(s)	647
PspN4I	GGNNCC	1 cut(s)	1033
PspPI	GGNCC	2 cut(s)	575, 876
PstI	CTGCAG	1 cut(s)	515
PsuI	RGATCY	1 cut(s)	1031
PvuII	CAGCTG	1 cut(s)	693
RsaI	GTAC	4 cut(s)	141, 509, 819, 836
RsaNI	GTAC	4 cut(s)	140, 508, 818, 835
RseI	CAYNNNNRTG	2 cut(s)	704, 801
SapI	GCTCTTC	1 cut(s)	792
SaqAI	TTAA	2 cut(s)	119, 587
SatI	GCNGC	2 cut(s)	674, 694
Sau3AI	GATC	3 cut(s)	7, 456, 1031
Sau96I	GGNCC	2 cut(s)	575, 876
ScaI	AGTACT	1 cut(s)	509
ScrFI	CCNGG	1 cut(s)	649
SduI	GDGCHC	3 cut(s)	81, 647, 852
SfaNI	GCATC	1 cut(s)	600
SfcI	CTRYAG	3 cut(s)	487, 511, 688
SinI	GGWCC	2 cut(s)	575, 876
SmiMI	CAYNNNNRTG	2 cut(s)	704, 801
SmlI	CTYRAG	2 cut(s)	164, 776
SmoI	CTYRAG	2 cut(s)	164, 776
Sse9I	AATT	6 cut(s)	243, 319, 407, 451, 765, 912
SsiI	CCGC	2 cut(s)	674, 933
SspMI	CTAG	4 cut(s)	566, 665, 894, 1058
StyD4I	CCNGG	1 cut(s)	647
StyI	CCWWGG	4 cut(s)	253, 444, 498, 565
TaaI	ACNGT	5 cut(s)	110, 196, 625, 642, 869
TaiI	ACGT	2 cut(s)	78, 744
TaqI	TCGA	4 cut(s)	10, 276, 309, 459
TasI	AATT	6 cut(s)	243, 319, 407, 451, 765, 912
TatI	WGTACW	2 cut(s)	507, 834
TauI	GCSGC	1 cut(s)	676
TfiI	GAWTC	6 cut(s)	94, 234, 258, 403, 461, 882
Tru1I	TTAA	2 cut(s)	119, 587
Tru9I	TTAA	2 cut(s)	119, 587
TscAI	CASTG	4 cut(s)	199, 369, 562, 867
TseFI	GTSAC	1 cut(s)	803
TseI	GCWGC	1 cut(s)	693
Tsp45I	GTSAC	1 cut(s)	803
TspDTI	ATGAA	5 cut(s)	195, 328, 539, 785, 941
TspGWI	ACGGA	1 cut(s)	765
TspRI	CASTG	4 cut(s)	199, 369, 562, 867
VneI	GTGCAC	1 cut(s)	848
VpaK11BI	GGWCC	2 cut(s)	575, 876
XcmI	CCANNNNNNNNNTGG	1 cut(s)	655
XmaJI	CCTAGG	1 cut(s)	565
XspI	CTAG	4 cut(s)	566, 665, 894, 1058
ZraI	GACGTC	1 cut(s)	742
ZrmI	AGTACT	1 cut(s)	509

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.