Rh1BG351500

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0011862
Physical Location & Seq
Forward (+)
48418777 .. 48419346
570 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG351500.1

Sequence Viewer

Length: 570 bp
ATGGGAGAGTACTGCAGAGAAGTAATGAAACTGAGCTTGGAAATAACAAGTGCCATCACCGAGAGCCTAGGCATAGGTCCAACCTACTTAACCAAGAAAATGGAAAACGGAATGCAAGTGATTACAGTCAATGGCTACCCACCGTGCCCCAGGCCAGAAATGGCGCTAGGGTTGCCGCCTCATTCAGACTACAGTTGCTTCACCATTGTGCTTCAGAGTTTCCCTGGACTGGAAATCATGCATGCTGAGGATGGAAAATGGAAACTAATCCCGCAACTTGAGAGTACTGCTCTTCAAGTCCATGTGGGTGACCATTTTGAGGTACTAAGCAATGGGTTGTACAAGAGTGTTGTGCACAGGGCAACACTGAACAGCGACAGGACTAGAATCTCCATTGCTAGCTTACACAGTTTGGGACTCGATGAGAAGATGAAGACTGCCGAGGAGCTTGTGAATGAAGAACAGCCTGCGAGGTACAGAGAAAGTAGCTTCAGAGATTTTCTGAATTTTCTCTCAAGCAATGATATAGCAGAGGGGATCAGCTTCCTCAACTCACTCAAACTTGCATAA

Protein Analysis

189

Amino Acids

21.09

Weight (kDa)

5.36

Isoelectric Point (pI)

36.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
2OG-FeII_Oxy PF03171 40 - 135 4.1e-23 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011862)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G07480 AT5G07480
fragaria_vesca FvH4_7g26820 FvH4_7g30770 FvH4_7g30770
malus_domestica MD01G1176500.v1.1
prunus_persica Prupe.2G271600_v2.0.a1
pyrus_communis pycom01g18720
rosa_chinensis RchiOBHm_Chr1g0373511
rosa_laevigata RLG00000026820
rosa_multiflora Rmu_co8362229.1_g000001 Rmu_sc0002860.1_g000008
rosa_roxburghii Rroxscaffold_4G00284190
rosa_rugosa Rorug01G0377800
rosa_samantha Rh1AG387100 Rh1BG351500 Rh1CG364200 Rh1DG381900
rosa_wichuraiana Rw1G034820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 176, 272
AclWI GGATC 1 cut(s) 545
AcsI RAATTY 1 cut(s) 505
AcuI CTGAAG 2 cut(s) 197, 475
AfaI GTAC 5 cut(s) 11, 286, 324, 341, 476
AfiI CCNNNNNNNGG 2 cut(s) 229, 319
AgsI TTSAA 1 cut(s) 296
AjnI CCWGG 2 cut(s) 149, 223
AjuI GAANNNNNNNTTGG 2 cut(s) 20, 52
AleI CACNNNNGTG 1 cut(s) 206
AluBI AGCT 5 cut(s) 36, 402, 448, 489, 543
AluI AGCT 5 cut(s) 36, 402, 448, 489, 543
Alw21I GWGCWC 1 cut(s) 357
Alw44I GTGCAC 1 cut(s) 353
AlwI GGATC 1 cut(s) 545
AoxI GGCC 1 cut(s) 152
ApaLI GTGCAC 1 cut(s) 353
ApoI RAATTY 1 cut(s) 505
AspA2I CCTAGG 1 cut(s) 67
AspLEI GCGC 1 cut(s) 166
AspS9I GGNCC 1 cut(s) 77
AsuHPI GGTGA 3 cut(s) 49, 193, 320
AsuNHI GCTAGC 1 cut(s) 398
AvaII GGWCC 1 cut(s) 77
AvrII CCTAGG 1 cut(s) 67
BaeGI GKGCMC 2 cut(s) 149, 357
BbsI GAAGAC 1 cut(s) 440
Bbv12I GWGCWC 1 cut(s) 357
BbvCI CCTCAGC 1 cut(s) 246
BccI CCATC 2 cut(s) 62, 245
BciT130I CCWGG 2 cut(s) 151, 225
BfaI CTAG 4 cut(s) 68, 167, 384, 399
BfmI CTRYAG 2 cut(s) 13, 190
BfoI RGCGCY 1 cut(s) 167
BisI GCNGC 1 cut(s) 176
BlnI CCTAGG 1 cut(s) 67
BlsI GCNGC 1 cut(s) 177
BmcAI AGTACT 2 cut(s) 11, 286
Bme1390I CCNGG 2 cut(s) 151, 225
Bme18I GGWCC 1 cut(s) 77
BmgT120I GGNCC 1 cut(s) 77
BmrFI CCNGG 2 cut(s) 151, 225
BmtI GCTAGC 1 cut(s) 402
BpiI GAAGAC 1 cut(s) 440
BplI GAGNNNNNCTC 2 cut(s) 274, 306
Bpu10I CCTNAGC 1 cut(s) 246
BpuEI CTTGAG 2 cut(s) 299, 499
BsaJI CCNNGG 4 cut(s) 67, 149, 223, 441
Bsc4I CCNNNNNNNGG 2 cut(s) 229, 319
Bse1I ACTGG 1 cut(s) 234
Bse3DI GCAATG 3 cut(s) 337, 393, 526
BseBI CCWGG 2 cut(s) 151, 225
BseDI CCNNGG 4 cut(s) 67, 149, 223, 441
BseGI GGATG 1 cut(s) 256
BseLI CCNNNNNNNGG 2 cut(s) 229, 319
BseMI GCAATG 3 cut(s) 337, 393, 526
BseMII CTCAG 2 cut(s) 23, 237
BseNI ACTGG 1 cut(s) 234
BseRI GAGGAG 1 cut(s) 458
BseSI GKGCMC 2 cut(s) 149, 357
BshFI GGCC 1 cut(s) 154
BsiHKAI GWGCWC 1 cut(s) 357
BslFI GGGAC 1 cut(s) 429
BslI CCNNNNNNNGG 2 cut(s) 229, 319
BsmFI GGGAC 1 cut(s) 429
BsmI GAATGC 1 cut(s) 117
BsnI GGCC 1 cut(s) 154
Bsp1286I GDGCHC 2 cut(s) 149, 357
Bsp1407I TGTACA 1 cut(s) 339
Bsp143I GATC 1 cut(s) 537
BspACI CCGC 2 cut(s) 176, 272
BspANI GGCC 1 cut(s) 154
BspCNI CTCAG 2 cut(s) 24, 238
BspMAI CTGCAG 1 cut(s) 17
BspOI GCTAGC 1 cut(s) 402
BspPI GGATC 1 cut(s) 545
BspQI GCTCTTC 1 cut(s) 297
BsrDI GCAATG 3 cut(s) 337, 393, 526
BsrGI TGTACA 1 cut(s) 339
BsrI ACTGG 1 cut(s) 234
BssECI CCNNGG 4 cut(s) 67, 149, 223, 441
BssMI GATC 1 cut(s) 537
BssT1I CCWWGG 1 cut(s) 67
Bst2UI CCWGG 2 cut(s) 151, 225
Bst4CI ACNGT 4 cut(s) 127, 144, 194, 410
Bst6I CTCTTC 1 cut(s) 297
BstAUI TGTACA 1 cut(s) 339
BstC8I GCNNGC 3 cut(s) 243, 400, 468
BstDEI CTNAG 3 cut(s) 32, 246, 326
BstEII GGTNACC 1 cut(s) 308
BstF5I GGATG 1 cut(s) 256
BstH2I RGCGCY 1 cut(s) 167
BstHHI GCGC 1 cut(s) 166
BstKTI GATC 1 cut(s) 540
BstMBI GATC 1 cut(s) 537
BstMWI GCNNNNNNNGC 1 cut(s) 172
BstNI CCWGG 2 cut(s) 151, 225
BstNSI RCATGY 1 cut(s) 245
BstPI GGTNACC 1 cut(s) 308
BstSCI CCNGG 2 cut(s) 149, 223
BstSFI CTRYAG 2 cut(s) 13, 190
BstSLI GKGCMC 2 cut(s) 149, 357
BstV2I GAAGAC 1 cut(s) 440
BstXI CCANNNNNNTGG 1 cut(s) 100
BsuRI GGCC 1 cut(s) 154
BtsCI GGATG 1 cut(s) 256
BtsIMutI CAGTG 1 cut(s) 365
Cac8I GCNNGC 3 cut(s) 243, 400, 468
CfoI GCGC 1 cut(s) 166
Cfr13I GGNCC 1 cut(s) 77
Csp6I GTAC 5 cut(s) 10, 285, 323, 340, 475
CviAII CATG 3 cut(s) 238, 242, 302
CviJI RGCY 9 cut(s) 36, 66, 135, 154, 402, 448, 466, 489, 543
CviKI_1 RGCY 9 cut(s) 36, 66, 135, 154, 402, 448, 466, 489, 543
CviQI GTAC 5 cut(s) 10, 285, 323, 340, 475
DdeI CTNAG 3 cut(s) 32, 246, 326
DpnI GATC 1 cut(s) 539
DpnII GATC 1 cut(s) 537
Eam1104I CTCTTC 1 cut(s) 297
EarI CTCTTC 1 cut(s) 297
Eco130I CCWWGG 1 cut(s) 67
Eco47I GGWCC 1 cut(s) 77
Eco57I CTGAAG 2 cut(s) 197, 475
Eco91I GGTNACC 1 cut(s) 308
EcoO65I GGTNACC 1 cut(s) 308
EcoRII CCWGG 2 cut(s) 149, 223
EcoT14I CCWWGG 1 cut(s) 67
EcoT22I ATGCAT 1 cut(s) 243
ErhI CCWWGG 1 cut(s) 67
FaeI CATG 3 cut(s) 241, 245, 305
FaiI YATR 6 cut(s) 74, 239, 243, 303, 527, 568
FaqI GGGAC 1 cut(s) 429
FatI CATG 3 cut(s) 237, 241, 301
FauI CCCGC 1 cut(s) 279
Fnu4HI GCNGC 1 cut(s) 176
FokI GGATG 1 cut(s) 263
Fsp4HI GCNGC 1 cut(s) 176
FspBI CTAG 4 cut(s) 68, 167, 384, 399
GlaI GCGC 1 cut(s) 165
GluI GCNGC 1 cut(s) 176
HaeII RGCGCY 1 cut(s) 167
HaeIII GGCC 1 cut(s) 154
HhaI GCGC 1 cut(s) 166
Hin1II CATG 3 cut(s) 241, 245, 305
Hin6I GCGC 1 cut(s) 164
HinP1I GCGC 1 cut(s) 164
HinfI GANTC 2 cut(s) 387, 417
HphI GGTGA 3 cut(s) 49, 193, 320
Hpy166II GTNNAC 1 cut(s) 355
Hpy188I TCNGA 4 cut(s) 187, 216, 494, 504
Hpy8I GTNNAC 1 cut(s) 355
HpyCH4III ACNGT 4 cut(s) 127, 144, 194, 410
HpyCH4V TGCA 5 cut(s) 15, 115, 241, 355, 566
HpyF10VI GCNNNNNNNGC 1 cut(s) 172
HpyF3I CTNAG 3 cut(s) 32, 246, 326
Hsp92II CATG 3 cut(s) 241, 245, 305
HspAI GCGC 1 cut(s) 164
Kzo9I GATC 1 cut(s) 537
LguI GCTCTTC 1 cut(s) 297
LmnI GCTCC 1 cut(s) 445
LpnPI CCDG 9 cut(s) 136, 163, 168, 210, 215, 237, 343, 364, 480
MaeI CTAG 4 cut(s) 68, 167, 384, 399
MaeIII GTNAC 1 cut(s) 308
MalI GATC 1 cut(s) 539
MboI GATC 1 cut(s) 537
MboII GAAGA 4 cut(s) 284, 439, 445, 470
MhlI GDGCHC 2 cut(s) 149, 357
MluCI AATT 1 cut(s) 505
MlyI GAGTC 1 cut(s) 411
MmeI TCCRAC 1 cut(s) 104
MnlI CCTC 7 cut(s) 189, 241, 313, 436, 465, 526, 557
Mph1103I ATGCAT 1 cut(s) 243
MseI TTAA 1 cut(s) 89
MslI CAYNNNNRTG 2 cut(s) 206, 306
MspR9I CCNGG 2 cut(s) 151, 225
Mva1269I GAATGC 1 cut(s) 117
MvaI CCWGG 2 cut(s) 151, 225
MwoI GCNNNNNNNGC 1 cut(s) 172
NdeII GATC 1 cut(s) 537
NheI GCTAGC 1 cut(s) 398
NlaIII CATG 3 cut(s) 241, 245, 305
NmeAIII GCCGAG 1 cut(s) 466
NmuCI GTSAC 1 cut(s) 308
NsiI ATGCAT 1 cut(s) 243
NspI RCATGY 1 cut(s) 245
OliI CACNNNNGTG 1 cut(s) 206
PaeI GCATGC 1 cut(s) 245
PciSI GCTCTTC 1 cut(s) 297
PctI GAATGC 1 cut(s) 117
PfeI GAWTC 1 cut(s) 387
PkrI GCNGC 1 cut(s) 177
PleI GAGTC 1 cut(s) 411
PpsI GAGTC 1 cut(s) 411
Psp6I CCWGG 2 cut(s) 149, 223
PspEI GGTNACC 1 cut(s) 308
PspGI CCWGG 2 cut(s) 149, 223
PspPI GGNCC 1 cut(s) 77
PstI CTGCAG 1 cut(s) 17
RsaI GTAC 5 cut(s) 11, 286, 324, 341, 476
RsaNI GTAC 5 cut(s) 10, 285, 323, 340, 475
RseI CAYNNNNRTG 2 cut(s) 206, 306
SapI GCTCTTC 1 cut(s) 297
SaqAI TTAA 1 cut(s) 89
SatI GCNGC 1 cut(s) 176
Sau3AI GATC 1 cut(s) 537
Sau96I GGNCC 1 cut(s) 77
ScaI AGTACT 2 cut(s) 11, 286
SchI GAGTC 1 cut(s) 411
ScrFI CCNGG 2 cut(s) 151, 225
SduI GDGCHC 2 cut(s) 149, 357
SetI ASST 9 cut(s) 38, 79, 86, 324, 404, 450, 476, 491, 545
SfcI CTRYAG 2 cut(s) 13, 190
SinI GGWCC 1 cut(s) 77
SmiMI CAYNNNNRTG 2 cut(s) 206, 306
SmlI CTYRAG 2 cut(s) 278, 514
SmoI CTYRAG 2 cut(s) 278, 514
SphI GCATGC 1 cut(s) 245
Sse9I AATT 1 cut(s) 505
SsiI CCGC 2 cut(s) 176, 272
SspMI CTAG 4 cut(s) 68, 167, 384, 399
StyD4I CCNGG 2 cut(s) 149, 223
StyI CCWWGG 1 cut(s) 67
TaaI ACNGT 4 cut(s) 127, 144, 194, 410
TaqI TCGA 1 cut(s) 420
TasI AATT 1 cut(s) 505
TatI WGTACW 3 cut(s) 9, 284, 339
TauI GCSGC 1 cut(s) 178
TfiI GAWTC 1 cut(s) 387
Tru1I TTAA 1 cut(s) 89
Tru9I TTAA 1 cut(s) 89
TscAI CASTG 1 cut(s) 372
TseFI GTSAC 1 cut(s) 308
Tsp45I GTSAC 1 cut(s) 308
TspDTI ATGAA 3 cut(s) 41, 446, 471
TspGWI ACGGA 1 cut(s) 123
TspRI CASTG 1 cut(s) 372
VneI GTGCAC 1 cut(s) 353
VpaK11BI GGWCC 1 cut(s) 77
XapI RAATTY 1 cut(s) 505
XceI RCATGY 1 cut(s) 245
XcmI CCANNNNNNNNNTGG 1 cut(s) 157
XmaJI CCTAGG 1 cut(s) 67
XspI CTAG 4 cut(s) 68, 167, 384, 399
ZrmI AGTACT 2 cut(s) 11, 286
Zsp2I ATGCAT 1 cut(s) 243
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.