Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8362229.1

Orthogroup ID

OG0011862

Physical Location & Seq

Genomic Coordinates Reverse (-)

37 .. 624

Gene Structure 588 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8362229.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

atgtttcacagggaaaccatgggagagtactgcagagaagtaatgaaactgagcttggaaataacaagtgccatcaccgagagcctaggcataggtccaacctacttaaccaagaaaatggaaaacggaatgcaagtgattacagtcaatggctacccaccgtgccccaggccagaaatggcgctagggttgccgcctcattcggactacagctgcttcaccattgtgcttcagagtttccctggactggaaatcatgcatgctgaggatggaaaatggaaactaatcccgcaacttgagagtactgctcttcaagtccatgtgggtgaccattttgaggtactaagcaatgggttgtacaagagtgttgtgcacagggcgacactgaacagcgacaggactagaatctccattgctagcttacacagtttgggactcgatgagaagatgaagactgccgaggagcttgtgaatgaagaacagcctgcgaggtacagagaaagtagcttcagagattttctgaattttctctcaagcaatgatatagcagaggggaccagcttcctcaactcactcaaactagcataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0010150 GO:0016491 GO:0016679 GO:0016682 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0055114 GO:0090693 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

195

Amino Acids

21.88

Weight (kDa)

5.49

Isoelectric Point (pI)

35.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011862)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07480 AT5G07480
fragaria_vesca	FvH4_7g26820 FvH4_7g30770 FvH4_7g30770
malus_domestica	MD01G1176500.v1.1
prunus_persica	Prupe.2G271600_v2.0.a1
pyrus_communis	pycom01g18720
rosa_chinensis	RchiOBHm_Chr1g0373511
rosa_laevigata	RLG00000026820
rosa_multiflora	Rmu_co8362229.1_g000001 Rmu_sc0002860.1_g000008
rosa_roxburghii	Rroxscaffold_4G00284190
rosa_rugosa	Rorug01G0377800
rosa_samantha	Rh1AG387100 Rh1BG351500 Rh1CG364200 Rh1DG381900
rosa_wichuraiana	Rw1G034820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	194, 290
AcsI	RAATTY	1 cut(s)	523
AcuI	CTGAAG	2 cut(s)	215, 493
AfaI	GTAC	5 cut(s)	29, 304, 342, 359, 494
AfiI	CCNNNNNNNGG	2 cut(s)	247, 337
AgsI	TTSAA	1 cut(s)	314
AjnI	CCWGG	2 cut(s)	167, 241
AjuI	GAANNNNNNNTTGG	2 cut(s)	38, 70
AleI	CACNNNNGTG	1 cut(s)	224
AluBI	AGCT	6 cut(s)	54, 213, 420, 466, 507, 561
AluI	AGCT	6 cut(s)	54, 213, 420, 466, 507, 561
Alw21I	GWGCWC	1 cut(s)	375
Alw44I	GTGCAC	1 cut(s)	371
AoxI	GGCC	1 cut(s)	170
ApaLI	GTGCAC	1 cut(s)	371
ApeKI	GCWGC	1 cut(s)	213
ApoI	RAATTY	1 cut(s)	523
AspA2I	CCTAGG	1 cut(s)	85
AspLEI	GCGC	1 cut(s)	184
AspS9I	GGNCC	2 cut(s)	95, 555
AsuHPI	GGTGA	3 cut(s)	67, 211, 338
AsuNHI	GCTAGC	1 cut(s)	416
AvaII	GGWCC	2 cut(s)	95, 555
AvrII	CCTAGG	1 cut(s)	85
BaeGI	GKGCMC	2 cut(s)	167, 375
BbsI	GAAGAC	1 cut(s)	458
Bbv12I	GWGCWC	1 cut(s)	375
BbvCI	CCTCAGC	1 cut(s)	264
BbvI	GCAGC	1 cut(s)	200
BccI	CCATC	2 cut(s)	80, 263
BciT130I	CCWGG	2 cut(s)	169, 243
BfaI	CTAG	5 cut(s)	86, 185, 402, 417, 581
BfmI	CTRYAG	2 cut(s)	31, 208
BfoI	RGCGCY	1 cut(s)	185
BisI	GCNGC	2 cut(s)	194, 214
BlnI	CCTAGG	1 cut(s)	85
BlsI	GCNGC	2 cut(s)	195, 215
BmcAI	AGTACT	2 cut(s)	29, 304
Bme1390I	CCNGG	2 cut(s)	169, 243
Bme18I	GGWCC	2 cut(s)	95, 555
BmgT120I	GGNCC	2 cut(s)	95, 555
BmiI	GGNNCC	1 cut(s)	556
BmrFI	CCNGG	2 cut(s)	169, 243
BmtI	GCTAGC	1 cut(s)	420
BpiI	GAAGAC	1 cut(s)	458
BplI	GAGNNNNNCTC	2 cut(s)	292, 324
Bpu10I	CCTNAGC	1 cut(s)	264
BpuEI	CTTGAG	2 cut(s)	317, 517
BsaJI	CCNNGG	5 cut(s)	18, 85, 167, 241, 459
Bsc4I	CCNNNNNNNGG	2 cut(s)	247, 337
Bse1I	ACTGG	1 cut(s)	252
Bse3DI	GCAATG	3 cut(s)	355, 411, 544
BseBI	CCWGG	2 cut(s)	169, 243
BseDI	CCNNGG	5 cut(s)	18, 85, 167, 241, 459
BseGI	GGATG	1 cut(s)	274
BseLI	CCNNNNNNNGG	2 cut(s)	247, 337
BseMI	GCAATG	3 cut(s)	355, 411, 544
BseMII	CTCAG	2 cut(s)	41, 255
BseNI	ACTGG	1 cut(s)	252
BseRI	GAGGAG	1 cut(s)	476
BseSI	GKGCMC	2 cut(s)	167, 375
BseXI	GCAGC	1 cut(s)	200
BshFI	GGCC	1 cut(s)	172
BsiHKAI	GWGCWC	1 cut(s)	375
BslFI	GGGAC	2 cut(s)	447, 568
BslI	CCNNNNNNNGG	2 cut(s)	247, 337
BsmFI	GGGAC	2 cut(s)	447, 568
BsmI	GAATGC	1 cut(s)	135
BsnI	GGCC	1 cut(s)	172
Bsp1286I	GDGCHC	2 cut(s)	167, 375
Bsp1407I	TGTACA	1 cut(s)	357
Bsp19I	CCATGG	1 cut(s)	18
BspACI	CCGC	2 cut(s)	194, 290
BspANI	GGCC	1 cut(s)	172
BspCNI	CTCAG	2 cut(s)	42, 256
BspLI	GGNNCC	1 cut(s)	556
BspMAI	CTGCAG	1 cut(s)	35
BspOI	GCTAGC	1 cut(s)	420
BspQI	GCTCTTC	1 cut(s)	315
BsrDI	GCAATG	3 cut(s)	355, 411, 544
BsrGI	TGTACA	1 cut(s)	357
BsrI	ACTGG	1 cut(s)	252
BssECI	CCNNGG	5 cut(s)	18, 85, 167, 241, 459
BssT1I	CCWWGG	2 cut(s)	18, 85
Bst2UI	CCWGG	2 cut(s)	169, 243
Bst4CI	ACNGT	3 cut(s)	145, 162, 428
Bst6I	CTCTTC	1 cut(s)	315
BstAUI	TGTACA	1 cut(s)	357
BstC8I	GCNNGC	3 cut(s)	261, 418, 486
BstDEI	CTNAG	3 cut(s)	50, 264, 344
BstDSI	CCRYGG	1 cut(s)	18
BstEII	GGTNACC	1 cut(s)	326
BstF5I	GGATG	1 cut(s)	274
BstH2I	RGCGCY	1 cut(s)	185
BstHHI	GCGC	1 cut(s)	184
BstMWI	GCNNNNNNNGC	1 cut(s)	190
BstNI	CCWGG	2 cut(s)	169, 243
BstNSI	RCATGY	1 cut(s)	263
BstPI	GGTNACC	1 cut(s)	326
BstSCI	CCNGG	2 cut(s)	167, 241
BstSFI	CTRYAG	2 cut(s)	31, 208
BstSLI	GKGCMC	2 cut(s)	167, 375
BstV1I	GCAGC	1 cut(s)	200
BstV2I	GAAGAC	1 cut(s)	458
BstXI	CCANNNNNNTGG	1 cut(s)	118
BsuRI	GGCC	1 cut(s)	172
BtgI	CCRYGG	1 cut(s)	18
BtsCI	GGATG	1 cut(s)	274
BtsIMutI	CAGTG	1 cut(s)	383
Cac8I	GCNNGC	3 cut(s)	261, 418, 486
CfoI	GCGC	1 cut(s)	184
Cfr13I	GGNCC	2 cut(s)	95, 555
Csp6I	GTAC	5 cut(s)	28, 303, 341, 358, 493
CviAII	CATG	4 cut(s)	19, 256, 260, 320
CviQI	GTAC	5 cut(s)	28, 303, 341, 358, 493
DdeI	CTNAG	3 cut(s)	50, 264, 344
Eam1104I	CTCTTC	1 cut(s)	315
EarI	CTCTTC	1 cut(s)	315
Eco130I	CCWWGG	2 cut(s)	18, 85
Eco47I	GGWCC	2 cut(s)	95, 555
Eco57I	CTGAAG	2 cut(s)	215, 493
Eco91I	GGTNACC	1 cut(s)	326
EcoO65I	GGTNACC	1 cut(s)	326
EcoRII	CCWGG	2 cut(s)	167, 241
EcoT14I	CCWWGG	2 cut(s)	18, 85
EcoT22I	ATGCAT	1 cut(s)	261
ErhI	CCWWGG	2 cut(s)	18, 85
FaeI	CATG	4 cut(s)	22, 259, 263, 323
FaiI	YATR	7 cut(s)	20, 92, 257, 261, 321, 545, 586
FaqI	GGGAC	2 cut(s)	447, 568
FatI	CATG	4 cut(s)	18, 255, 259, 319
FauI	CCCGC	1 cut(s)	297
Fnu4HI	GCNGC	2 cut(s)	194, 214
FokI	GGATG	1 cut(s)	281
Fsp4HI	GCNGC	2 cut(s)	194, 214
FspBI	CTAG	5 cut(s)	86, 185, 402, 417, 581
GlaI	GCGC	1 cut(s)	183
GluI	GCNGC	2 cut(s)	194, 214
HaeII	RGCGCY	1 cut(s)	185
HaeIII	GGCC	1 cut(s)	172
HhaI	GCGC	1 cut(s)	184
Hin1II	CATG	4 cut(s)	22, 259, 263, 323
Hin6I	GCGC	1 cut(s)	182
HinP1I	GCGC	1 cut(s)	182
HinfI	GANTC	2 cut(s)	405, 435
HphI	GGTGA	3 cut(s)	67, 211, 338
Hpy166II	GTNNAC	1 cut(s)	373
Hpy188I	TCNGA	4 cut(s)	205, 234, 512, 522
Hpy8I	GTNNAC	1 cut(s)	373
HpyCH4III	ACNGT	3 cut(s)	145, 162, 428
HpyCH4V	TGCA	4 cut(s)	33, 133, 259, 373
HpyF10VI	GCNNNNNNNGC	1 cut(s)	190
HpyF3I	CTNAG	3 cut(s)	50, 264, 344
Hsp92II	CATG	4 cut(s)	22, 259, 263, 323
HspAI	GCGC	1 cut(s)	182
LguI	GCTCTTC	1 cut(s)	315
LmnI	GCTCC	1 cut(s)	463
Lsp1109I	GCAGC	1 cut(s)	200
MaeI	CTAG	5 cut(s)	86, 185, 402, 417, 581
MaeIII	GTNAC	1 cut(s)	326
MboII	GAAGA	4 cut(s)	302, 457, 463, 488
MhlI	GDGCHC	2 cut(s)	167, 375
MluCI	AATT	1 cut(s)	523
MlyI	GAGTC	1 cut(s)	429
MmeI	TCCRAC	1 cut(s)	122
MnlI	CCTC	7 cut(s)	207, 259, 331, 454, 483, 544, 575
Mph1103I	ATGCAT	1 cut(s)	261
MseI	TTAA	1 cut(s)	107
MslI	CAYNNNNRTG	2 cut(s)	224, 324
MspA1I	CMGCKG	1 cut(s)	213
MspR9I	CCNGG	2 cut(s)	169, 243
Mva1269I	GAATGC	1 cut(s)	135
MvaI	CCWGG	2 cut(s)	169, 243
MwoI	GCNNNNNNNGC	1 cut(s)	190
NcoI	CCATGG	1 cut(s)	18
NheI	GCTAGC	1 cut(s)	416
NlaIII	CATG	4 cut(s)	22, 259, 263, 323
NlaIV	GGNNCC	1 cut(s)	556
NmeAIII	GCCGAG	1 cut(s)	484
NmuCI	GTSAC	1 cut(s)	326
NsiI	ATGCAT	1 cut(s)	261
NspI	RCATGY	1 cut(s)	263
OliI	CACNNNNGTG	1 cut(s)	224
PaeI	GCATGC	1 cut(s)	263
PciSI	GCTCTTC	1 cut(s)	315
PctI	GAATGC	1 cut(s)	135
PfeI	GAWTC	1 cut(s)	405
PkrI	GCNGC	2 cut(s)	195, 215
PleI	GAGTC	1 cut(s)	429
PpsI	GAGTC	1 cut(s)	429
Psp6I	CCWGG	2 cut(s)	167, 241
PspEI	GGTNACC	1 cut(s)	326
PspGI	CCWGG	2 cut(s)	167, 241
PspN4I	GGNNCC	1 cut(s)	556
PspPI	GGNCC	2 cut(s)	95, 555
PstI	CTGCAG	1 cut(s)	35
PvuII	CAGCTG	1 cut(s)	213
RsaI	GTAC	5 cut(s)	29, 304, 342, 359, 494
RsaNI	GTAC	5 cut(s)	28, 303, 341, 358, 493
RseI	CAYNNNNRTG	2 cut(s)	224, 324
SapI	GCTCTTC	1 cut(s)	315
SaqAI	TTAA	1 cut(s)	107
SatI	GCNGC	2 cut(s)	194, 214
Sau96I	GGNCC	2 cut(s)	95, 555
ScaI	AGTACT	2 cut(s)	29, 304
SchI	GAGTC	1 cut(s)	429
ScrFI	CCNGG	2 cut(s)	169, 243
SduI	GDGCHC	2 cut(s)	167, 375
SfcI	CTRYAG	2 cut(s)	31, 208
SinI	GGWCC	2 cut(s)	95, 555
SmiMI	CAYNNNNRTG	2 cut(s)	224, 324
SmlI	CTYRAG	2 cut(s)	296, 532
SmoI	CTYRAG	2 cut(s)	296, 532
SphI	GCATGC	1 cut(s)	263
Sse9I	AATT	1 cut(s)	523
SsiI	CCGC	2 cut(s)	194, 290
SspMI	CTAG	5 cut(s)	86, 185, 402, 417, 581
StyD4I	CCNGG	2 cut(s)	167, 241
StyI	CCWWGG	2 cut(s)	18, 85
TaaI	ACNGT	3 cut(s)	145, 162, 428
TaqI	TCGA	1 cut(s)	438
TasI	AATT	1 cut(s)	523
TatI	WGTACW	3 cut(s)	27, 302, 357
TauI	GCSGC	1 cut(s)	196
TfiI	GAWTC	1 cut(s)	405
Tru1I	TTAA	1 cut(s)	107
Tru9I	TTAA	1 cut(s)	107
TscAI	CASTG	1 cut(s)	390
TseFI	GTSAC	1 cut(s)	326
TseI	GCWGC	1 cut(s)	213
Tsp45I	GTSAC	1 cut(s)	326
TspDTI	ATGAA	3 cut(s)	59, 464, 489
TspGWI	ACGGA	1 cut(s)	141
TspRI	CASTG	1 cut(s)	390
VneI	GTGCAC	1 cut(s)	371
VpaK11BI	GGWCC	2 cut(s)	95, 555
XapI	RAATTY	1 cut(s)	523
XceI	RCATGY	1 cut(s)	263
XcmI	CCANNNNNNNNNTGG	1 cut(s)	175
XmaJI	CCTAGG	1 cut(s)	85
XspI	CTAG	5 cut(s)	86, 185, 402, 417, 581
ZrmI	AGTACT	2 cut(s)	29, 304
Zsp2I	ATGCAT	1 cut(s)	261

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.