Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0011862

Physical Location & Seq

Genomic Coordinates Reverse (-)

6273762 .. 6275701

Gene Structure 1940 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000026820

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

ATGGGGGATCAAGACGAGAGCCGTTCGAGCTCATTTCCGATGGGGAAGACTGCACAAGAGAGGGGCTTGCCCTACGTGCCCGAGTGCTATGTGATTCCAACTTCACACCGTGCCAGCTTAACTCCAGAAGTTGCCAACGTACCCACCATCGATTTTGGTAAGCTCAAACGGGGTTCTCATGATGAAGAACGAGCAACTGTAATCCAAGAAATTAGAACTGCCTGTCGTCAGCTTGGATTCTTTAAAATTATCAACCATGGAATCCATCAATCGGTGCTAGATAGGGCGCTGGCTATGGCTTTGGAGTTTTTCGAGATGCCTGGTTCAGAGAAGGCAAAGTTCATGTCTAACGATGTTCACAAACCAGTGAGGTATGGGACAAGCTTCAAAGATGGAGTTGATAAGACTCAATTCTGGAGGGTTTTCCTCAAACATTATGCTCACCCCTTGGAAAATTGGATCGATTCTTGGCCAAACAATCCACCAAGCTACAGGGAAACCATGGGAGAGTACTGCAGAGAAGTAATGAAACTGAGCTTGGAAATAACAGGTGCCATCACCGAGAGCCTAGGCATAGGTCCAACCTACTTAACCAAGAAAATGGAAAACGGAATGCAAGTGATTACAGTCAATGGCTACCCACCGTGCCCCAGGCCAGAAATGGCGCTAGGGTTGCCGCCTCATTCGGACTACAGCTGCTTCACCATTGTGCTTCAGAGTTTCCCTGGACTGGAAATCATGCATGCTGAGGATGGAAAATGGAAACTAATCCCGCAACTTGAGAGTACTGCTCTTCAAGTCCATGTGGGTGACCATTTTGAGGTACTAAGCAATGGGTTGTACAAGAGTGTTGTGCACAGGGCGACACTGAACAGTGACAGGACTAGAATCTCCATTGCTAGCTTACACAGTTTGGGACTCGATGAGAAGATGAAGACTGCCGAGGAGCTTGTCAATGGAGAACAGCCTGCGAGGTACAGAGAAAGTAGCTTCAGAGATTTTCTGAATTTTCTCTCAAGCAATGATATAGCAGAGGGGACCAGCTTCCTCAACTCACTCAAACTAGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0010150 GO:0016491 GO:0016679 GO:0016682 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0055114 GO:0090693 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

357

Amino Acids

40.09

Weight (kDa)

6.13

Isoelectric Point (pI)

37.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	47 - 159	6.8e-24	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	207 - 302	1.7e-22	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011862)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07480 AT5G07480
fragaria_vesca	FvH4_7g26820 FvH4_7g30770 FvH4_7g30770
malus_domestica	MD01G1176500.v1.1
prunus_persica	Prupe.2G271600_v2.0.a1
pyrus_communis	pycom01g18720
rosa_chinensis	RchiOBHm_Chr1g0373511
rosa_laevigata	RLG00000026820
rosa_multiflora	Rmu_co8362229.1_g000001 Rmu_sc0002860.1_g000008
rosa_roxburghii	Rroxscaffold_4G00284190
rosa_rugosa	Rorug01G0377800
rosa_samantha	Rh1AG387100 Rh1BG351500 Rh1CG364200 Rh1DG381900
rosa_wichuraiana	Rw1G034820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	551
AciI	CCGC	2 cut(s)	677, 773
AclWI	GGATC	2 cut(s)	15, 467
AcoI	YGGCCR	1 cut(s)	470
AcsI	RAATTY	1 cut(s)	1006
AcuI	CTGAAG	2 cut(s)	698, 976
AdeI	CACNNNGTG	1 cut(s)	110
AfaI	GTAC	6 cut(s)	141, 512, 787, 825, 842, 977
AfiI	CCNNNNNNNGG	3 cut(s)	271, 730, 820
AgsI	TTSAA	2 cut(s)	388, 797
AjnI	CCWGG	3 cut(s)	319, 650, 724
AjuI	GAANNNNNNNTTGG	2 cut(s)	521, 553
AleI	CACNNNNGTG	1 cut(s)	707
Alw21I	GWGCWC	2 cut(s)	32, 858
Alw44I	GTGCAC	1 cut(s)	854
AlwI	GGATC	2 cut(s)	15, 467
Ama87I	CYCGRG	1 cut(s)	80
AoxI	GGCC	2 cut(s)	470, 653
ApaLI	GTGCAC	1 cut(s)	854
ApeKI	GCWGC	1 cut(s)	696
ApoI	RAATTY	1 cut(s)	1006
ArsI	GACNNNNNNTTYG	2 cut(s)	329, 361
AspA2I	CCTAGG	1 cut(s)	568
AspLEI	GCGC	2 cut(s)	289, 667
AspS9I	GGNCC	2 cut(s)	578, 1038
AsuHPI	GGTGA	4 cut(s)	434, 550, 694, 821
AsuNHI	GCTAGC	1 cut(s)	899
AvaI	CYCGRG	1 cut(s)	80
AvaII	GGWCC	2 cut(s)	578, 1038
AvrII	CCTAGG	1 cut(s)	568
BaeGI	GKGCMC	3 cut(s)	81, 650, 858
BalI	TGGCCA	1 cut(s)	472
BanI	GGYRCC	1 cut(s)	551
BanII	GRGCYC	1 cut(s)	32
BbsI	GAAGAC	2 cut(s)	53, 941
Bbv12I	GWGCWC	2 cut(s)	32, 858
BbvCI	CCTCAGC	1 cut(s)	747
BbvI	GCAGC	1 cut(s)	683
BccI	CCATC	6 cut(s)	34, 155, 273, 386, 563, 746
BceAI	ACGGC	1 cut(s)	6
BciT130I	CCWGG	3 cut(s)	321, 652, 726
BfaI	CTAG	6 cut(s)	278, 569, 668, 885, 900, 1064
BfmI	CTRYAG	3 cut(s)	490, 514, 691
BfoI	RGCGCY	2 cut(s)	290, 668
BisI	GCNGC	2 cut(s)	677, 697
BlnI	CCTAGG	1 cut(s)	568
BlsI	GCNGC	2 cut(s)	678, 698
BmcAI	AGTACT	2 cut(s)	512, 787
Bme1390I	CCNGG	3 cut(s)	321, 652, 726
Bme18I	GGWCC	2 cut(s)	578, 1038
BmeT110I	CYCGRG	1 cut(s)	80
BmgT120I	GGNCC	2 cut(s)	578, 1038
BmiI	GGNNCC	2 cut(s)	553, 1039
BmrFI	CCNGG	3 cut(s)	321, 652, 726
BmsI	GCATC	1 cut(s)	306
BmtI	GCTAGC	1 cut(s)	903
BpiI	GAAGAC	2 cut(s)	53, 941
BplI	GAGNNNNNCTC	2 cut(s)	775, 807
BpmI	CTGGAG	2 cut(s)	108, 436
Bpu10I	CCTNAGC	1 cut(s)	747
BpuEI	CTTGAG	2 cut(s)	800, 1000
Bsa29I	ATCGAT	2 cut(s)	150, 462
BsaAI	YACGTR	1 cut(s)	76
BsaJI	CCNNGG	7 cut(s)	256, 447, 501, 568, 650, 724, 942
Bsc4I	CCNNNNNNNGG	3 cut(s)	271, 730, 820
Bse1I	ACTGG	2 cut(s)	365, 735
Bse3DI	GCAATG	3 cut(s)	838, 894, 1027
BseBI	CCWGG	3 cut(s)	321, 652, 726
BseCI	ATCGAT	2 cut(s)	150, 462
BseDI	CCNNGG	7 cut(s)	256, 447, 501, 568, 650, 724, 942
BseGI	GGATG	1 cut(s)	757
BseLI	CCNNNNNNNGG	3 cut(s)	271, 730, 820
BseMI	GCAATG	3 cut(s)	838, 894, 1027
BseMII	CTCAG	2 cut(s)	524, 738
BseNI	ACTGG	2 cut(s)	365, 735
BseRI	GAGGAG	1 cut(s)	959
BseSI	GKGCMC	3 cut(s)	81, 650, 858
BseXI	GCAGC	1 cut(s)	683
BsgI	GTGCAG	1 cut(s)	36
BshFI	GGCC	2 cut(s)	472, 655
BshNI	GGYRCC	1 cut(s)	551
BshVI	ATCGAT	2 cut(s)	150, 462
BsiHKAI	GWGCWC	2 cut(s)	32, 858
BsiHKCI	CYCGRG	1 cut(s)	80
BslFI	GGGAC	3 cut(s)	391, 930, 1051
BslI	CCNNNNNNNGG	3 cut(s)	271, 730, 820
BsmFI	GGGAC	3 cut(s)	391, 930, 1051
BsmI	GAATGC	1 cut(s)	618
BsnI	GGCC	2 cut(s)	472, 655
BsoBI	CYCGRG	1 cut(s)	80
Bsp1286I	GDGCHC	4 cut(s)	32, 81, 650, 858
Bsp1407I	TGTACA	1 cut(s)	840
Bsp143I	GATC	2 cut(s)	7, 459
Bsp19I	CCATGG	2 cut(s)	256, 501
BspACI	CCGC	2 cut(s)	677, 773
BspANI	GGCC	2 cut(s)	472, 655
BspCNI	CTCAG	2 cut(s)	525, 739
BspDI	ATCGAT	2 cut(s)	150, 462
BspHI	TCATGA	1 cut(s)	178
BspLI	GGNNCC	2 cut(s)	553, 1039
BspMAI	CTGCAG	1 cut(s)	518
BspOI	GCTAGC	1 cut(s)	903
BspPI	GGATC	2 cut(s)	15, 467
BspQI	GCTCTTC	1 cut(s)	798
BspT107I	GGYRCC	1 cut(s)	551
BsrDI	GCAATG	3 cut(s)	838, 894, 1027
BsrGI	TGTACA	1 cut(s)	840
BsrI	ACTGG	2 cut(s)	365, 735
BssECI	CCNNGG	7 cut(s)	256, 447, 501, 568, 650, 724, 942
BssMI	GATC	2 cut(s)	7, 459
BssT1I	CCWWGG	4 cut(s)	256, 447, 501, 568
Bst2UI	CCWGG	3 cut(s)	321, 652, 726
Bst4CI	ACNGT	6 cut(s)	110, 199, 628, 645, 875, 911
Bst6I	CTCTTC	1 cut(s)	798
BstAUI	TGTACA	1 cut(s)	840
BstBAI	YACGTR	1 cut(s)	76
BstC8I	GCNNGC	6 cut(s)	68, 115, 291, 744, 901, 969
BstDEI	CTNAG	3 cut(s)	533, 747, 827
BstDSI	CCRYGG	2 cut(s)	256, 501
BstEII	GGTNACC	1 cut(s)	809
BstF5I	GGATG	1 cut(s)	757
BstH2I	RGCGCY	2 cut(s)	290, 668
BstHHI	GCGC	2 cut(s)	289, 667
BstKTI	GATC	2 cut(s)	10, 462
BstMBI	GATC	2 cut(s)	7, 459
BstMWI	GCNNNNNNNGC	3 cut(s)	27, 76, 673
BstNI	CCWGG	3 cut(s)	321, 652, 726
BstNSI	RCATGY	1 cut(s)	746
BstPI	GGTNACC	1 cut(s)	809
BstSCI	CCNGG	3 cut(s)	319, 650, 724
BstSFI	CTRYAG	3 cut(s)	490, 514, 691
BstSLI	GKGCMC	3 cut(s)	81, 650, 858
BstV1I	GCAGC	1 cut(s)	683
BstV2I	GAAGAC	2 cut(s)	53, 941
BstXI	CCANNNNNNTGG	1 cut(s)	601
Bsu15I	ATCGAT	2 cut(s)	150, 462
BsuRI	GGCC	2 cut(s)	472, 655
BsuTUI	ATCGAT	2 cut(s)	150, 462
BtgI	CCRYGG	2 cut(s)	256, 501
BtsCI	GGATG	1 cut(s)	757
BtsIMutI	CAGTG	3 cut(s)	372, 866, 880
Cac8I	GCNNGC	6 cut(s)	68, 115, 291, 744, 901, 969
CciI	TCATGA	1 cut(s)	178
CfoI	GCGC	2 cut(s)	289, 667
Cfr13I	GGNCC	2 cut(s)	578, 1038
ClaI	ATCGAT	2 cut(s)	150, 462
Csp6I	GTAC	6 cut(s)	140, 511, 786, 824, 841, 976
CviAII	CATG	7 cut(s)	179, 257, 343, 502, 739, 743, 803
CviQI	GTAC	6 cut(s)	140, 511, 786, 824, 841, 976
DdeI	CTNAG	3 cut(s)	533, 747, 827
DpnI	GATC	2 cut(s)	9, 461
DpnII	GATC	2 cut(s)	7, 459
DraI	TTTAAA	1 cut(s)	244
DraIII	CACNNNGTG	1 cut(s)	110
EaeI	YGGCCR	1 cut(s)	470
Eam1104I	CTCTTC	1 cut(s)	798
EarI	CTCTTC	1 cut(s)	798
Ecl136II	GAGCTC	1 cut(s)	30
Eco130I	CCWWGG	4 cut(s)	256, 447, 501, 568
Eco24I	GRGCYC	1 cut(s)	32
Eco47I	GGWCC	2 cut(s)	578, 1038
Eco53kI	GAGCTC	1 cut(s)	30
Eco57I	CTGAAG	2 cut(s)	698, 976
Eco88I	CYCGRG	1 cut(s)	80
Eco91I	GGTNACC	1 cut(s)	809
EcoICRI	GAGCTC	1 cut(s)	30
EcoO65I	GGTNACC	1 cut(s)	809
EcoRII	CCWGG	3 cut(s)	319, 650, 724
EcoT14I	CCWWGG	4 cut(s)	256, 447, 501, 568
EcoT22I	ATGCAT	1 cut(s)	744
EcoT38I	GRGCYC	1 cut(s)	32
ErhI	CCWWGG	4 cut(s)	256, 447, 501, 568
FaeI	CATG	7 cut(s)	182, 260, 346, 505, 742, 746, 806
FaqI	GGGAC	3 cut(s)	391, 930, 1051
FatI	CATG	7 cut(s)	178, 256, 342, 501, 738, 742, 802
FauI	CCCGC	1 cut(s)	780
Fnu4HI	GCNGC	2 cut(s)	677, 697
FokI	GGATG	1 cut(s)	764
FriOI	GRGCYC	1 cut(s)	32
Fsp4HI	GCNGC	2 cut(s)	677, 697
FspBI	CTAG	6 cut(s)	278, 569, 668, 885, 900, 1064
GlaI	GCGC	2 cut(s)	288, 666
GluI	GCNGC	2 cut(s)	677, 697
GsuI	CTGGAG	2 cut(s)	108, 436
HaeII	RGCGCY	2 cut(s)	290, 668
HaeIII	GGCC	2 cut(s)	472, 655
HhaI	GCGC	2 cut(s)	289, 667
Hin1II	CATG	7 cut(s)	182, 260, 346, 505, 742, 746, 806
Hin6I	GCGC	2 cut(s)	287, 665
HinP1I	GCGC	2 cut(s)	287, 665
HindIII	AAGCTT	1 cut(s)	382
HinfI	GANTC	7 cut(s)	94, 237, 261, 406, 464, 888, 918
HphI	GGTGA	4 cut(s)	434, 550, 694, 821
Hpy166II	GTNNAC	2 cut(s)	358, 856
Hpy188I	TCNGA	6 cut(s)	39, 328, 688, 717, 995, 1005
Hpy188III	TCNNGA	5 cut(s)	11, 125, 179, 313, 415
Hpy8I	GTNNAC	2 cut(s)	358, 856
HpyAV	CCTTC	1 cut(s)	325
HpyCH4III	ACNGT	6 cut(s)	110, 199, 628, 645, 875, 911
HpyCH4IV	ACGT	2 cut(s)	75, 138
HpyCH4V	TGCA	5 cut(s)	53, 516, 616, 742, 856
HpyF10VI	GCNNNNNNNGC	3 cut(s)	27, 76, 673
HpyF3I	CTNAG	3 cut(s)	533, 747, 827
HpySE526I	ACGT	2 cut(s)	75, 138
Hsp92II	CATG	7 cut(s)	182, 260, 346, 505, 742, 746, 806
HspAI	GCGC	2 cut(s)	287, 665
Kzo9I	GATC	2 cut(s)	7, 459
LguI	GCTCTTC	1 cut(s)	798
LmnI	GCTCC	1 cut(s)	946
Lsp1109I	GCAGC	1 cut(s)	683
LweI	GCATC	1 cut(s)	306
MaeI	CTAG	6 cut(s)	278, 569, 668, 885, 900, 1064
MaeII	ACGT	2 cut(s)	75, 138
MaeIII	GTNAC	2 cut(s)	809, 875
MalI	GATC	2 cut(s)	9, 461
MboI	GATC	2 cut(s)	7, 459
MboII	GAAGA	5 cut(s)	58, 197, 785, 940, 946
MhlI	GDGCHC	4 cut(s)	32, 81, 650, 858
MlsI	TGGCCA	1 cut(s)	472
MluCI	AATT	5 cut(s)	210, 246, 410, 454, 1006
MluNI	TGGCCA	1 cut(s)	472
MlyI	GAGTC	2 cut(s)	400, 912
MmeI	TCCRAC	2 cut(s)	122, 605
Mox20I	TGGCCA	1 cut(s)	472
Mph1103I	ATGCAT	1 cut(s)	744
MscI	TGGCCA	1 cut(s)	472
MseI	TTAA	3 cut(s)	119, 243, 590
MslI	CAYNNNNRTG	2 cut(s)	707, 807
Msp20I	TGGCCA	1 cut(s)	472
MspA1I	CMGCKG	1 cut(s)	696
MspR9I	CCNGG	3 cut(s)	321, 652, 726
Mva1269I	GAATGC	1 cut(s)	618
MvaI	CCWGG	3 cut(s)	321, 652, 726
MwoI	GCNNNNNNNGC	3 cut(s)	27, 76, 673
NcoI	CCATGG	2 cut(s)	256, 501
NdeII	GATC	2 cut(s)	7, 459
NheI	GCTAGC	1 cut(s)	899
NlaIII	CATG	7 cut(s)	182, 260, 346, 505, 742, 746, 806
NlaIV	GGNNCC	2 cut(s)	553, 1039
NmeAIII	GCCGAG	1 cut(s)	967
NmuCI	GTSAC	2 cut(s)	809, 875
NsiI	ATGCAT	1 cut(s)	744
NspI	RCATGY	1 cut(s)	746
OliI	CACNNNNGTG	1 cut(s)	707
PaeI	GCATGC	1 cut(s)	746
PagI	TCATGA	1 cut(s)	178
PciSI	GCTCTTC	1 cut(s)	798
PctI	GAATGC	1 cut(s)	618
PfeI	GAWTC	5 cut(s)	94, 237, 261, 464, 888
PkrI	GCNGC	2 cut(s)	678, 698
PleI	GAGTC	2 cut(s)	400, 912
PpsI	GAGTC	2 cut(s)	400, 912
Ppu21I	YACGTR	1 cut(s)	76
Psp124BI	GAGCTC	1 cut(s)	32
Psp6I	CCWGG	3 cut(s)	319, 650, 724
PspEI	GGTNACC	1 cut(s)	809
PspGI	CCWGG	3 cut(s)	319, 650, 724
PspN4I	GGNNCC	2 cut(s)	553, 1039
PspPI	GGNCC	2 cut(s)	578, 1038
PstI	CTGCAG	1 cut(s)	518
PvuII	CAGCTG	1 cut(s)	696
RsaI	GTAC	6 cut(s)	141, 512, 787, 825, 842, 977
RsaNI	GTAC	6 cut(s)	140, 511, 786, 824, 841, 976
RseI	CAYNNNNRTG	2 cut(s)	707, 807
SacI	GAGCTC	1 cut(s)	32
SapI	GCTCTTC	1 cut(s)	798
SaqAI	TTAA	3 cut(s)	119, 243, 590
SatI	GCNGC	2 cut(s)	677, 697
Sau3AI	GATC	2 cut(s)	7, 459
Sau96I	GGNCC	2 cut(s)	578, 1038
ScaI	AGTACT	2 cut(s)	512, 787
SchI	GAGTC	2 cut(s)	400, 912
ScrFI	CCNGG	3 cut(s)	321, 652, 726
SduI	GDGCHC	4 cut(s)	32, 81, 650, 858
SfaNI	GCATC	1 cut(s)	306
SfcI	CTRYAG	3 cut(s)	490, 514, 691
SinI	GGWCC	2 cut(s)	578, 1038
SmiMI	CAYNNNNRTG	2 cut(s)	707, 807
SmlI	CTYRAG	2 cut(s)	779, 1015
SmoI	CTYRAG	2 cut(s)	779, 1015
SphI	GCATGC	1 cut(s)	746
Sse9I	AATT	5 cut(s)	210, 246, 410, 454, 1006
SsiI	CCGC	2 cut(s)	677, 773
SspMI	CTAG	6 cut(s)	278, 569, 668, 885, 900, 1064
SstI	GAGCTC	1 cut(s)	32
StyD4I	CCNGG	3 cut(s)	319, 650, 724
StyI	CCWWGG	4 cut(s)	256, 447, 501, 568
TaaI	ACNGT	6 cut(s)	110, 199, 628, 645, 875, 911
TaiI	ACGT	2 cut(s)	78, 141
TaqI	TCGA	5 cut(s)	26, 150, 312, 462, 921
TasI	AATT	5 cut(s)	210, 246, 410, 454, 1006
TatI	WGTACW	3 cut(s)	510, 785, 840
TauI	GCSGC	1 cut(s)	679
TfiI	GAWTC	5 cut(s)	94, 237, 261, 464, 888
Tru1I	TTAA	3 cut(s)	119, 243, 590
Tru9I	TTAA	3 cut(s)	119, 243, 590
TscAI	CASTG	3 cut(s)	372, 873, 880
TseFI	GTSAC	2 cut(s)	809, 875
TseI	GCWGC	1 cut(s)	696
Tsp45I	GTSAC	2 cut(s)	809, 875
TspDTI	ATGAA	4 cut(s)	198, 331, 542, 947
TspGWI	ACGGA	1 cut(s)	624
TspRI	CASTG	3 cut(s)	372, 873, 880
VneI	GTGCAC	1 cut(s)	854
VpaK11BI	GGWCC	2 cut(s)	578, 1038
XapI	RAATTY	1 cut(s)	1006
XceI	RCATGY	1 cut(s)	746
XcmI	CCANNNNNNNNNTGG	1 cut(s)	658
XmaJI	CCTAGG	1 cut(s)	568
XspI	CTAG	6 cut(s)	278, 569, 668, 885, 900, 1064
ZrmI	AGTACT	2 cut(s)	512, 787
Zsp2I	ATGCAT	1 cut(s)	744

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.