Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0011862

Physical Location & Seq

Genomic Coordinates Forward (+)

27721546 .. 27723665

Gene Structure 2120 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1176500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGGATGTTGCCACTGTTCCGACCATTGATTTTGGAAGACTGAAACAAGGCCCTGATGAACGAAAACTTGTTATTGAAGAAATTAGAACTGCTTGTCGTCAGTTAGGGTTCTTCCAAATTGTGAACCATGGCATCTGTCAAACTGTTTTGGATGAGGCTCTTTTGTCGGCGTCGGAGTTTTTCAATTTGCCGGGCTCAGAGAAGGCAAAGTTCATGTCTAATGATGTTCACAACCCAGTGAGGTACGGGACAAGCTTGAAGGATGGACTTGATACGATTCAGTTTTGGAGGGCTTTTCTTAAACATTATGCTCACCCGTTGGCAGATTGGATCAAGTACTGGCCTAACAATCCTTCTAATTACAGGTACGTATCTACAAGGGAAACAATGGGCAAGTATAGCTCAGAAGTGAAGAAACTGAACACGGAGATAACAGAAACAATCACGGAGAGTCTAGGGATAGGTCCAAACTACATAAGCAAGAAAATGGAAGATGGAATGCAAGTCATTACAGTCAACTGCTACCCACCATGCCCTAATCCTGAAATTGCACTAGGGTTGCCACCCCATTCAGACTACAGCTGCTTAACCATTGTTCTTCAGAGCTGCCCAGGGCTCGAAATCATGCATACCGGAGACAGCAAATGGAAGCAAGTCCCACAGCTTCATGGTGCTCTCCAAGTCCATGTGGGTGACCATTTTGAAGTACTAAGCAATGGATTGTACAAGAGTGTTGTGCACCGGGCCACGTTGAACCGTGACAGGACAAGAATCTCCATTGTTAGCCTGCATAGTTTGGGATTGGAGGAGAAGATGGGCACTGCCAAAGAGCTTGTGAGTGAAGAGAATCCTGGGAGGTACAAAAAAAGCAGCTTCAAAGATTTTCTGAATTTTCTCGCCAACAATGATCTAGCAGAAGGGAAGAGCTTCATTAACACACTCAAAGTTGATGAAAAACAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0010150 GO:0016491 GO:0016679 GO:0016682 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0055114 GO:0090693 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

321

Amino Acids

36.12

Weight (kDa)

6.6

Isoelectric Point (pI)

34.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	6 - 116	1.8e-24	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	170 - 263	6.8e-25	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011862)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07480 AT5G07480
fragaria_vesca	FvH4_7g26820 FvH4_7g30770 FvH4_7g30770
malus_domestica	MD01G1176500.v1.1
prunus_persica	Prupe.2G271600_v2.0.a1
pyrus_communis	pycom01g18720
rosa_chinensis	RchiOBHm_Chr1g0373511
rosa_laevigata	RLG00000026820
rosa_multiflora	Rmu_co8362229.1_g000001 Rmu_sc0002860.1_g000008
rosa_roxburghii	Rroxscaffold_4G00284190
rosa_rugosa	Rorug01G0377800
rosa_samantha	Rh1AG387100 Rh1BG351500 Rh1CG364200 Rh1DG381900
rosa_wichuraiana	Rw1G034820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	338
AcsI	RAATTY	1 cut(s)	889
AcuI	CTGAAG	1 cut(s)	584
AcyI	GRCGYC	1 cut(s)	170
AfaI	GTAC	6 cut(s)	245, 338, 368, 708, 725, 860
AgsI	TTSAA	6 cut(s)	77, 184, 259, 704, 754, 877
AjnI	CCWGG	2 cut(s)	610, 850
AluBI	AGCT	8 cut(s)	255, 402, 582, 606, 664, 832, 873, 927
AluI	AGCT	8 cut(s)	255, 402, 582, 606, 664, 832, 873, 927
Alw21I	GWGCWC	2 cut(s)	676, 741
Alw26I	GTCTC	1 cut(s)	630
Alw44I	GTGCAC	1 cut(s)	737
AlwI	GGATC	1 cut(s)	338
AoxI	GGCC	3 cut(s)	49, 341, 744
ApaLI	GTGCAC	1 cut(s)	737
ApeKI	GCWGC	3 cut(s)	582, 606, 870
ApoI	RAATTY	1 cut(s)	889
ArsI	GACNNNNNNTTYG	2 cut(s)	200, 232
Asp700I	GAANNNNTTC	1 cut(s)	926
AspS9I	GGNCC	3 cut(s)	50, 464, 744
AsuC2I	CCSGG	2 cut(s)	192, 743
AsuHPI	GGTGA	2 cut(s)	305, 704
AvaII	GGWCC	1 cut(s)	464
BaeGI	GKGCMC	2 cut(s)	741, 821
BanII	GRGCYC	2 cut(s)	197, 618
BbsI	GAAGAC	1 cut(s)	43
Bbv12I	GWGCWC	2 cut(s)	676, 741
BbvI	GCAGC	3 cut(s)	569, 593, 882
BccI	CCATC	3 cut(s)	257, 488, 808
BciT130I	CCWGG	2 cut(s)	612, 852
BcnI	CCSGG	2 cut(s)	192, 743
BcoDI	GTCTC	1 cut(s)	630
BfaI	CTAG	3 cut(s)	455, 554, 911
BfmI	CTRYAG	1 cut(s)	577
BisI	GCNGC	3 cut(s)	583, 607, 871
BlsI	GCNGC	3 cut(s)	584, 608, 872
BmcAI	AGTACT	2 cut(s)	338, 708
Bme1390I	CCNGG	4 cut(s)	192, 612, 743, 852
Bme18I	GGWCC	1 cut(s)	464
BmgT120I	GGNCC	3 cut(s)	50, 464, 744
BmrFI	CCNGG	4 cut(s)	192, 612, 743, 852
BmrI	ACTGGG	1 cut(s)	230
BmsI	GCATC	1 cut(s)	141
BmuI	ACTGGG	1 cut(s)	230
BpiI	GAAGAC	1 cut(s)	43
BpuMI	CCSGG	2 cut(s)	192, 743
BsaAI	YACGTR	1 cut(s)	370
BsaHI	GRCGYC	1 cut(s)	170
BsaJI	CCNNGG	4 cut(s)	127, 610, 611, 851
BsaWI	WCCGGW	1 cut(s)	632
Bse1I	ACTGG	2 cut(s)	236, 344
Bse3DI	GCAATG	1 cut(s)	721
BseBI	CCWGG	2 cut(s)	612, 852
BseDI	CCNNGG	4 cut(s)	127, 610, 611, 851
BseGI	GGATG	3 cut(s)	10, 157, 268
BseMI	GCAATG	1 cut(s)	721
BseMII	CTCAG	2 cut(s)	210, 417
BseNI	ACTGG	2 cut(s)	236, 344
BseRI	GAGGAG	1 cut(s)	821
BseSI	GKGCMC	2 cut(s)	741, 821
BseXI	GCAGC	3 cut(s)	569, 593, 882
BshFI	GGCC	3 cut(s)	51, 343, 746
BsiHKAI	GWGCWC	2 cut(s)	676, 741
BsiSI	CCGG	3 cut(s)	191, 633, 742
BslFI	GGGAC	2 cut(s)	262, 641
BsmAI	GTCTC	1 cut(s)	630
BsmFI	GGGAC	2 cut(s)	262, 641
BsmI	GAATGC	1 cut(s)	504
BsnI	GGCC	3 cut(s)	51, 343, 746
Bsp1286I	GDGCHC	5 cut(s)	197, 618, 676, 741, 821
Bsp1407I	TGTACA	1 cut(s)	723
Bsp143I	GATC	2 cut(s)	330, 907
Bsp19I	CCATGG	1 cut(s)	127
BspANI	GGCC	3 cut(s)	51, 343, 746
BspCNI	CTCAG	2 cut(s)	209, 416
BspPI	GGATC	1 cut(s)	338
BspQI	GCTCTTC	1 cut(s)	917
BsrDI	GCAATG	1 cut(s)	721
BsrGI	TGTACA	1 cut(s)	723
BsrI	ACTGG	2 cut(s)	236, 344
BssECI	CCNNGG	4 cut(s)	127, 610, 611, 851
BssMI	GATC	2 cut(s)	330, 907
BssNI	GRCGYC	1 cut(s)	170
BssT1I	CCWWGG	1 cut(s)	127
Bst2UI	CCWGG	2 cut(s)	612, 852
Bst4CI	ACNGT	4 cut(s)	16, 145, 514, 758
Bst6I	CTCTTC	2 cut(s)	837, 917
BstACI	GRCGYC	1 cut(s)	170
BstAUI	TGTACA	1 cut(s)	723
BstBAI	YACGTR	1 cut(s)	370
BstC8I	GCNNGC	1 cut(s)	788
BstDEI	CTNAG	3 cut(s)	196, 403, 710
BstDSI	CCRYGG	1 cut(s)	127
BstEII	GGTNACC	1 cut(s)	692
BstF5I	GGATG	3 cut(s)	10, 157, 268
BstKTI	GATC	2 cut(s)	333, 910
BstMAI	GTCTC	1 cut(s)	630
BstMBI	GATC	2 cut(s)	330, 907
BstMWI	GCNNNNNNNGC	1 cut(s)	399
BstNI	CCWGG	2 cut(s)	612, 852
BstPI	GGTNACC	1 cut(s)	692
BstSCI	CCNGG	4 cut(s)	190, 610, 741, 850
BstSFI	CTRYAG	1 cut(s)	577
BstSLI	GKGCMC	2 cut(s)	741, 821
BstSNI	TACGTA	1 cut(s)	370
BstV1I	GCAGC	3 cut(s)	569, 593, 882
BstV2I	GAAGAC	1 cut(s)	43
BsuRI	GGCC	3 cut(s)	51, 343, 746
BtgI	CCRYGG	1 cut(s)	127
BtsCI	GGATG	3 cut(s)	10, 157, 268
BtsI	GCAGTG	1 cut(s)	819
BtsIMutI	CAGTG	3 cut(s)	12, 243, 819
Cac8I	GCNNGC	1 cut(s)	788
Cfr13I	GGNCC	3 cut(s)	50, 464, 744
CseI	GACGC	1 cut(s)	159
Csp6I	GTAC	6 cut(s)	244, 337, 367, 707, 724, 859
CviAII	CATG	6 cut(s)	128, 214, 531, 625, 668, 686
CviQI	GTAC	6 cut(s)	244, 337, 367, 707, 724, 859
DdeI	CTNAG	3 cut(s)	196, 403, 710
DpnI	GATC	2 cut(s)	332, 909
DpnII	GATC	2 cut(s)	330, 907
Eam1104I	CTCTTC	2 cut(s)	837, 917
EarI	CTCTTC	2 cut(s)	837, 917
Eco105I	TACGTA	1 cut(s)	370
Eco130I	CCWWGG	1 cut(s)	127
Eco24I	GRGCYC	2 cut(s)	197, 618
Eco47I	GGWCC	1 cut(s)	464
Eco57I	CTGAAG	1 cut(s)	584
Eco91I	GGTNACC	1 cut(s)	692
EcoO109I	RGGNCCY	1 cut(s)	50
EcoO65I	GGTNACC	1 cut(s)	692
EcoRII	CCWGG	2 cut(s)	610, 850
EcoT14I	CCWWGG	1 cut(s)	127
EcoT22I	ATGCAT	1 cut(s)	630
EcoT38I	GRGCYC	2 cut(s)	197, 618
ErhI	CCWWGG	1 cut(s)	127
FaeI	CATG	6 cut(s)	131, 217, 534, 628, 671, 689
FaqI	GGGAC	2 cut(s)	262, 641
FatI	CATG	6 cut(s)	127, 213, 530, 624, 667, 685
Fnu4HI	GCNGC	3 cut(s)	583, 607, 871
FokI	GGATG	3 cut(s)	17, 164, 275
FriOI	GRGCYC	2 cut(s)	197, 618
Fsp4HI	GCNGC	3 cut(s)	583, 607, 871
FspBI	CTAG	3 cut(s)	455, 554, 911
GluI	GCNGC	3 cut(s)	583, 607, 871
HaeIII	GGCC	3 cut(s)	51, 343, 746
HapII	CCGG	3 cut(s)	191, 633, 742
HgaI	GACGC	1 cut(s)	159
Hin1I	GRCGYC	1 cut(s)	170
Hin1II	CATG	6 cut(s)	131, 217, 534, 628, 671, 689
HincII	GTYRAC	1 cut(s)	517
HindII	GTYRAC	1 cut(s)	517
HindIII	AAGCTT	1 cut(s)	253
HinfI	GANTC	4 cut(s)	277, 451, 771, 847
HpaII	CCGG	3 cut(s)	191, 633, 742
HphI	GGTGA	2 cut(s)	305, 704
Hpy166II	GTNNAC	4 cut(s)	124, 229, 517, 739
Hpy188I	TCNGA	7 cut(s)	21, 175, 199, 406, 574, 603, 888
Hpy188III	TCNNGA	1 cut(s)	542
Hpy8I	GTNNAC	4 cut(s)	124, 229, 517, 739
Hpy99I	CGWCG	1 cut(s)	175
HpyAV	CCTTC	4 cut(s)	196, 253, 363, 911
HpyCH4III	ACNGT	4 cut(s)	16, 145, 514, 758
HpyCH4IV	ACGT	2 cut(s)	369, 749
HpyCH4V	TGCA	5 cut(s)	502, 551, 628, 739, 790
HpyF10VI	GCNNNNNNNGC	1 cut(s)	399
HpyF3I	CTNAG	3 cut(s)	196, 403, 710
HpySE526I	ACGT	2 cut(s)	369, 749
Hsp92I	GRCGYC	1 cut(s)	170
Hsp92II	CATG	6 cut(s)	131, 217, 534, 628, 671, 689
Kzo9I	GATC	2 cut(s)	330, 907
LguI	GCTCTTC	1 cut(s)	917
Lsp1109I	GCAGC	3 cut(s)	569, 593, 882
LweI	GCATC	1 cut(s)	141
MaeI	CTAG	3 cut(s)	455, 554, 911
MaeII	ACGT	2 cut(s)	369, 749
MaeIII	GTNAC	2 cut(s)	692, 758
MalI	GATC	2 cut(s)	332, 909
MboI	GATC	2 cut(s)	330, 907
MboII	GAAGA	9 cut(s)	48, 89, 103, 424, 503, 590, 823, 854, 934
MhlI	GDGCHC	5 cut(s)	197, 618, 676, 741, 821
MluCI	AATT	6 cut(s)	81, 117, 184, 358, 546, 889
MlyI	GAGTC	1 cut(s)	460
MmeI	TCCRAC	2 cut(s)	44, 153
MnlI	CCTC	5 cut(s)	148, 234, 282, 799, 849
Mph1103I	ATGCAT	1 cut(s)	630
MroXI	GAANNNNTTC	1 cut(s)	926
MseI	TTAA	3 cut(s)	300, 587, 933
MslI	CAYNNNNRTG	1 cut(s)	690
MspA1I	CMGCKG	1 cut(s)	582
MspI	CCGG	3 cut(s)	191, 633, 742
MspR9I	CCNGG	4 cut(s)	192, 612, 743, 852
Mva1269I	GAATGC	1 cut(s)	504
MvaI	CCWGG	2 cut(s)	612, 852
MwoI	GCNNNNNNNGC	1 cut(s)	399
NciI	CCSGG	2 cut(s)	192, 743
NcoI	CCATGG	1 cut(s)	127
NdeII	GATC	2 cut(s)	330, 907
NlaIII	CATG	6 cut(s)	131, 217, 534, 628, 671, 689
NmuCI	GTSAC	2 cut(s)	692, 758
NsiI	ATGCAT	1 cut(s)	630
PasI	CCCWGGG	1 cut(s)	611
PciSI	GCTCTTC	1 cut(s)	917
PctI	GAATGC	1 cut(s)	504
PdmI	GAANNNNTTC	1 cut(s)	926
PfeI	GAWTC	3 cut(s)	277, 771, 847
PkrI	GCNGC	3 cut(s)	584, 608, 872
PleI	GAGTC	1 cut(s)	459
PpsI	GAGTC	1 cut(s)	459
Ppu21I	YACGTR	1 cut(s)	370
Psp6I	CCWGG	2 cut(s)	610, 850
PspEI	GGTNACC	1 cut(s)	692
PspGI	CCWGG	2 cut(s)	610, 850
PspPI	GGNCC	3 cut(s)	50, 464, 744
PvuII	CAGCTG	1 cut(s)	582
RsaI	GTAC	6 cut(s)	245, 338, 368, 708, 725, 860
RsaNI	GTAC	6 cut(s)	244, 337, 367, 707, 724, 859
RseI	CAYNNNNRTG	1 cut(s)	690
SapI	GCTCTTC	1 cut(s)	917
SaqAI	TTAA	3 cut(s)	300, 587, 933
SatI	GCNGC	3 cut(s)	583, 607, 871
Sau3AI	GATC	2 cut(s)	330, 907
Sau96I	GGNCC	3 cut(s)	50, 464, 744
ScaI	AGTACT	2 cut(s)	338, 708
SchI	GAGTC	1 cut(s)	460
ScrFI	CCNGG	4 cut(s)	192, 612, 743, 852
SduI	GDGCHC	5 cut(s)	197, 618, 676, 741, 821
SfaNI	GCATC	1 cut(s)	141
SfcI	CTRYAG	1 cut(s)	577
SinI	GGWCC	1 cut(s)	464
SmiMI	CAYNNNNRTG	1 cut(s)	690
SnaBI	TACGTA	1 cut(s)	370
Sse9I	AATT	6 cut(s)	81, 117, 184, 358, 546, 889
SspMI	CTAG	3 cut(s)	455, 554, 911
StyD4I	CCNGG	4 cut(s)	190, 610, 741, 850
StyI	CCWWGG	1 cut(s)	127
TaaI	ACNGT	4 cut(s)	16, 145, 514, 758
TaiI	ACGT	2 cut(s)	372, 752
TaqI	TCGA	1 cut(s)	618
TasI	AATT	6 cut(s)	81, 117, 184, 358, 546, 889
TatI	WGTACW	3 cut(s)	336, 706, 723
TfiI	GAWTC	3 cut(s)	277, 771, 847
Tru1I	TTAA	3 cut(s)	300, 587, 933
Tru9I	TTAA	3 cut(s)	300, 587, 933
TscAI	CASTG	3 cut(s)	19, 243, 826
TseFI	GTSAC	2 cut(s)	692, 758
TseI	GCWGC	3 cut(s)	582, 606, 870
Tsp45I	GTSAC	2 cut(s)	692, 758
TspDTI	ATGAA	4 cut(s)	72, 202, 656, 919
TspGWI	ACGGA	2 cut(s)	440, 461
TspRI	CASTG	3 cut(s)	19, 243, 826
VneI	GTGCAC	1 cut(s)	737
VpaK11BI	GGWCC	1 cut(s)	464
XapI	RAATTY	1 cut(s)	889
XmnI	GAANNNNTTC	1 cut(s)	926
XspI	CTAG	3 cut(s)	455, 554, 911
ZrmI	AGTACT	2 cut(s)	338, 708
Zsp2I	ATGCAT	1 cut(s)	630

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.