Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0011862

Physical Location & Seq

Genomic Coordinates Reverse (-)

62690499 .. 62692368

Gene Structure 1870 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G034820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGGAGAAGACTGCACAAGAGAGGGGCTTGCCCTACGTGCCCGAGTGTTATGTGATTCCAACTTCACACCGTGCCAGCTTAACTCCAGAAGTTGCCAATGTACCCACCATCGATTTTGGTAAGCTCAAACAGAGTTCTGATGAAGAACGAGCAACTATTATCAACCATGGAATCCATCAATCGGTGCTAGATAGGGCCCTGGCTATGGCTTTGGAGTTTTTCGAGATGCCTGGTTCAGAGAAGGCAAAGTTCATGTCTAACGATGTTCACAAACCAGTGAGGTATGGGACAAGCTTCAGAGATGGAGTTGATAATATTCAATTCTGGAGGGTTTTCCTCAAACATTATGCTCACCCCTTGGAAAATTGGATCGATTCTTGGCCAAACAATCCACCAAGCTACAGGGAAACCATGGGAGAGTACTGCAGAGAAGTAATGAAACTGAGCTTGGAAATAACAAGTGCCATCACCGAGAGCCTAGGCATAGGTCCAACCTACTTAACCAAGAAAATGGAAAACGGAATGCAAGTGATTACAGTCAATGGCTACCCACCGTGCCCCAGGCCAGAAATGGCGCTAGGGTTGCCGCCTCATTCGGACTACAGCTGCTTCACCATTGTGCTTCAGAGTTTCCCTGGACTGGAAATCATGCATGCTGAGGATGGAAAATGGAAACTAATCCCGCAACTTGAGAGTACTGCTCTTCAAGTCCATGTGGGTGACCATTTTGAGGTACTAAGCAATGGGTTGTACAAGAGTGTTGTGCACAGGGCGACACTGAACAGCGACAGGACTAGAATCTCCATTGCTAGCTTACACAGTTTGGGACTCGATGAGAAGATGAAGACTGCCGAGGAGCTTGTGAATGAAGAACAGCCTGCGAGGTACAGAGAAAGTAGCTTCAGAGATTTTCTGAATTTTCTCTCAAGCAATGATATAGCAGAGGGGACCAGCTTCCTCAACTCACTCAAACTAGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0010150 GO:0016491 GO:0016679 GO:0016682 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0055114 GO:0090693 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

326

Amino Acids

36.84

Weight (kDa)

5.66

Isoelectric Point (pI)

40.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	53 - 129	1.9e-10	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	177 - 272	1.4e-22	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011862)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07480 AT5G07480
fragaria_vesca	FvH4_7g26820 FvH4_7g30770 FvH4_7g30770
malus_domestica	MD01G1176500.v1.1
prunus_persica	Prupe.2G271600_v2.0.a1
pyrus_communis	pycom01g18720
rosa_chinensis	RchiOBHm_Chr1g0373511
rosa_laevigata	RLG00000026820
rosa_multiflora	Rmu_co8362229.1_g000001 Rmu_sc0002860.1_g000008
rosa_roxburghii	Rroxscaffold_4G00284190
rosa_rugosa	Rorug01G0377800
rosa_samantha	Rh1AG387100 Rh1BG351500 Rh1CG364200 Rh1DG381900
rosa_wichuraiana	Rw1G034820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	587, 683
AclWI	GGATC	1 cut(s)	377
AcoI	YGGCCR	1 cut(s)	380
AcsI	RAATTY	1 cut(s)	916
AcuI	CTGAAG	3 cut(s)	280, 608, 886
AdeI	CACNNNGTG	1 cut(s)	71
AfaI	GTAC	6 cut(s)	102, 422, 697, 735, 752, 887
AfiI	CCNNNNNNNGG	4 cut(s)	181, 205, 640, 730
AgsI	TTSAA	2 cut(s)	320, 707
AjnI	CCWGG	4 cut(s)	198, 229, 560, 634
AjuI	GAANNNNNNNTTGG	2 cut(s)	431, 463
AleI	CACNNNNGTG	1 cut(s)	617
Alw21I	GWGCWC	1 cut(s)	768
Alw44I	GTGCAC	1 cut(s)	764
AlwI	GGATC	1 cut(s)	377
Ama87I	CYCGRG	1 cut(s)	41
AoxI	GGCC	3 cut(s)	195, 380, 563
ApaI	GGGCCC	1 cut(s)	199
ApaLI	GTGCAC	1 cut(s)	764
ApeKI	GCWGC	1 cut(s)	606
ApoI	RAATTY	1 cut(s)	916
ArsI	GACNNNNNNTTYG	2 cut(s)	239, 271
AspA2I	CCTAGG	1 cut(s)	478
AspLEI	GCGC	1 cut(s)	577
AspS9I	GGNCC	4 cut(s)	195, 196, 488, 948
AsuHPI	GGTGA	4 cut(s)	344, 460, 604, 731
AsuNHI	GCTAGC	1 cut(s)	809
AvaI	CYCGRG	1 cut(s)	41
AvaII	GGWCC	2 cut(s)	488, 948
AvrII	CCTAGG	1 cut(s)	478
BaeGI	GKGCMC	4 cut(s)	42, 199, 560, 768
BalI	TGGCCA	1 cut(s)	382
BanII	GRGCYC	1 cut(s)	199
BbsI	GAAGAC	2 cut(s)	14, 851
Bbv12I	GWGCWC	1 cut(s)	768
BbvCI	CCTCAGC	1 cut(s)	657
BbvI	GCAGC	1 cut(s)	593
BccI	CCATC	5 cut(s)	116, 183, 296, 473, 656
BciT130I	CCWGG	4 cut(s)	200, 231, 562, 636
BfaI	CTAG	6 cut(s)	188, 479, 578, 795, 810, 974
BfmI	CTRYAG	3 cut(s)	400, 424, 601
BfoI	RGCGCY	1 cut(s)	578
BisI	GCNGC	2 cut(s)	587, 607
BlnI	CCTAGG	1 cut(s)	478
BlsI	GCNGC	2 cut(s)	588, 608
BmcAI	AGTACT	2 cut(s)	422, 697
Bme1390I	CCNGG	4 cut(s)	200, 231, 562, 636
Bme18I	GGWCC	2 cut(s)	488, 948
BmeT110I	CYCGRG	1 cut(s)	41
BmgT120I	GGNCC	4 cut(s)	195, 196, 488, 948
BmiI	GGNNCC	2 cut(s)	197, 949
BmrFI	CCNGG	4 cut(s)	200, 231, 562, 636
BmsI	GCATC	1 cut(s)	216
BmtI	GCTAGC	1 cut(s)	813
BpiI	GAAGAC	2 cut(s)	14, 851
BplI	GAGNNNNNCTC	2 cut(s)	685, 717
BpmI	CTGGAG	2 cut(s)	69, 346
Bpu10I	CCTNAGC	1 cut(s)	657
BpuEI	CTTGAG	2 cut(s)	710, 910
Bsa29I	ATCGAT	2 cut(s)	111, 372
BsaAI	YACGTR	1 cut(s)	37
BsaJI	CCNNGG	8 cut(s)	166, 198, 357, 411, 478, 560, 634, 852
Bsc4I	CCNNNNNNNGG	4 cut(s)	181, 205, 640, 730
Bse1I	ACTGG	2 cut(s)	275, 645
Bse3DI	GCAATG	3 cut(s)	748, 804, 937
BseBI	CCWGG	4 cut(s)	200, 231, 562, 636
BseCI	ATCGAT	2 cut(s)	111, 372
BseDI	CCNNGG	8 cut(s)	166, 198, 357, 411, 478, 560, 634, 852
BseGI	GGATG	1 cut(s)	667
BseLI	CCNNNNNNNGG	4 cut(s)	181, 205, 640, 730
BseMI	GCAATG	3 cut(s)	748, 804, 937
BseMII	CTCAG	2 cut(s)	434, 648
BseNI	ACTGG	2 cut(s)	275, 645
BseRI	GAGGAG	1 cut(s)	869
BseSI	GKGCMC	4 cut(s)	42, 199, 560, 768
BseXI	GCAGC	1 cut(s)	593
BshFI	GGCC	3 cut(s)	197, 382, 565
BshVI	ATCGAT	2 cut(s)	111, 372
BsiHKAI	GWGCWC	1 cut(s)	768
BsiHKCI	CYCGRG	1 cut(s)	41
BslFI	GGGAC	3 cut(s)	301, 840, 961
BslI	CCNNNNNNNGG	4 cut(s)	181, 205, 640, 730
BsmFI	GGGAC	3 cut(s)	301, 840, 961
BsmI	GAATGC	1 cut(s)	528
BsnI	GGCC	3 cut(s)	197, 382, 565
BsoBI	CYCGRG	1 cut(s)	41
Bsp120I	GGGCCC	1 cut(s)	195
Bsp1286I	GDGCHC	4 cut(s)	42, 199, 560, 768
Bsp1407I	TGTACA	1 cut(s)	750
Bsp143I	GATC	1 cut(s)	369
Bsp19I	CCATGG	2 cut(s)	166, 411
BspACI	CCGC	2 cut(s)	587, 683
BspANI	GGCC	3 cut(s)	197, 382, 565
BspCNI	CTCAG	2 cut(s)	435, 649
BspDI	ATCGAT	2 cut(s)	111, 372
BspLI	GGNNCC	2 cut(s)	197, 949
BspMAI	CTGCAG	1 cut(s)	428
BspOI	GCTAGC	1 cut(s)	813
BspPI	GGATC	1 cut(s)	377
BspQI	GCTCTTC	1 cut(s)	708
BsrDI	GCAATG	3 cut(s)	748, 804, 937
BsrGI	TGTACA	1 cut(s)	750
BsrI	ACTGG	2 cut(s)	275, 645
BssECI	CCNNGG	8 cut(s)	166, 198, 357, 411, 478, 560, 634, 852
BssMI	GATC	1 cut(s)	369
BssT1I	CCWWGG	4 cut(s)	166, 357, 411, 478
Bst2UI	CCWGG	4 cut(s)	200, 231, 562, 636
Bst4CI	ACNGT	4 cut(s)	71, 538, 555, 821
Bst6I	CTCTTC	1 cut(s)	708
BstAUI	TGTACA	1 cut(s)	750
BstBAI	YACGTR	1 cut(s)	37
BstC8I	GCNNGC	5 cut(s)	29, 76, 654, 811, 879
BstDEI	CTNAG	3 cut(s)	443, 657, 737
BstDSI	CCRYGG	2 cut(s)	166, 411
BstEII	GGTNACC	1 cut(s)	719
BstF5I	GGATG	1 cut(s)	667
BstH2I	RGCGCY	1 cut(s)	578
BstHHI	GCGC	1 cut(s)	577
BstKTI	GATC	1 cut(s)	372
BstMBI	GATC	1 cut(s)	369
BstMWI	GCNNNNNNNGC	2 cut(s)	37, 583
BstNI	CCWGG	4 cut(s)	200, 231, 562, 636
BstNSI	RCATGY	1 cut(s)	656
BstPI	GGTNACC	1 cut(s)	719
BstSCI	CCNGG	4 cut(s)	198, 229, 560, 634
BstSFI	CTRYAG	3 cut(s)	400, 424, 601
BstSLI	GKGCMC	4 cut(s)	42, 199, 560, 768
BstV1I	GCAGC	1 cut(s)	593
BstV2I	GAAGAC	2 cut(s)	14, 851
BstXI	CCANNNNNNTGG	1 cut(s)	511
Bsu15I	ATCGAT	2 cut(s)	111, 372
BsuRI	GGCC	3 cut(s)	197, 382, 565
BsuTUI	ATCGAT	2 cut(s)	111, 372
BtgI	CCRYGG	2 cut(s)	166, 411
BtsCI	GGATG	1 cut(s)	667
BtsIMutI	CAGTG	2 cut(s)	282, 776
Cac8I	GCNNGC	5 cut(s)	29, 76, 654, 811, 879
CfoI	GCGC	1 cut(s)	577
Cfr13I	GGNCC	4 cut(s)	195, 196, 488, 948
ClaI	ATCGAT	2 cut(s)	111, 372
Csp6I	GTAC	6 cut(s)	101, 421, 696, 734, 751, 886
CviAII	CATG	6 cut(s)	167, 253, 412, 649, 653, 713
CviQI	GTAC	6 cut(s)	101, 421, 696, 734, 751, 886
DdeI	CTNAG	3 cut(s)	443, 657, 737
DpnI	GATC	1 cut(s)	371
DpnII	GATC	1 cut(s)	369
DraIII	CACNNNGTG	1 cut(s)	71
EaeI	YGGCCR	1 cut(s)	380
Eam1104I	CTCTTC	1 cut(s)	708
EarI	CTCTTC	1 cut(s)	708
Eco130I	CCWWGG	4 cut(s)	166, 357, 411, 478
Eco24I	GRGCYC	1 cut(s)	199
Eco47I	GGWCC	2 cut(s)	488, 948
Eco57I	CTGAAG	3 cut(s)	280, 608, 886
Eco88I	CYCGRG	1 cut(s)	41
Eco91I	GGTNACC	1 cut(s)	719
EcoO109I	RGGNCCY	2 cut(s)	195, 196
EcoO65I	GGTNACC	1 cut(s)	719
EcoRII	CCWGG	4 cut(s)	198, 229, 560, 634
EcoT14I	CCWWGG	4 cut(s)	166, 357, 411, 478
EcoT22I	ATGCAT	1 cut(s)	654
EcoT38I	GRGCYC	1 cut(s)	199
ErhI	CCWWGG	4 cut(s)	166, 357, 411, 478
FaeI	CATG	6 cut(s)	170, 256, 415, 652, 656, 716
FaqI	GGGAC	3 cut(s)	301, 840, 961
FatI	CATG	6 cut(s)	166, 252, 411, 648, 652, 712
FauI	CCCGC	1 cut(s)	690
Fnu4HI	GCNGC	2 cut(s)	587, 607
FokI	GGATG	1 cut(s)	674
FriOI	GRGCYC	1 cut(s)	199
Fsp4HI	GCNGC	2 cut(s)	587, 607
FspBI	CTAG	6 cut(s)	188, 479, 578, 795, 810, 974
GlaI	GCGC	1 cut(s)	576
GluI	GCNGC	2 cut(s)	587, 607
GsuI	CTGGAG	2 cut(s)	69, 346
HaeII	RGCGCY	1 cut(s)	578
HaeIII	GGCC	3 cut(s)	197, 382, 565
HhaI	GCGC	1 cut(s)	577
Hin1II	CATG	6 cut(s)	170, 256, 415, 652, 656, 716
Hin6I	GCGC	1 cut(s)	575
HinP1I	GCGC	1 cut(s)	575
HindIII	AAGCTT	1 cut(s)	292
HinfI	GANTC	5 cut(s)	55, 171, 374, 798, 828
HphI	GGTGA	4 cut(s)	344, 460, 604, 731
Hpy166II	GTNNAC	2 cut(s)	268, 766
Hpy188I	TCNGA	7 cut(s)	139, 238, 299, 598, 627, 905, 915
Hpy188III	TCNNGA	3 cut(s)	86, 223, 325
Hpy8I	GTNNAC	2 cut(s)	268, 766
HpyAV	CCTTC	1 cut(s)	235
HpyCH4III	ACNGT	4 cut(s)	71, 538, 555, 821
HpyCH4IV	ACGT	1 cut(s)	36
HpyCH4V	TGCA	5 cut(s)	14, 426, 526, 652, 766
HpyF10VI	GCNNNNNNNGC	2 cut(s)	37, 583
HpyF3I	CTNAG	3 cut(s)	443, 657, 737
HpySE526I	ACGT	1 cut(s)	36
Hsp92II	CATG	6 cut(s)	170, 256, 415, 652, 656, 716
HspAI	GCGC	1 cut(s)	575
Kzo9I	GATC	1 cut(s)	369
LguI	GCTCTTC	1 cut(s)	708
LmnI	GCTCC	1 cut(s)	856
Lsp1109I	GCAGC	1 cut(s)	593
LweI	GCATC	1 cut(s)	216
MaeI	CTAG	6 cut(s)	188, 479, 578, 795, 810, 974
MaeII	ACGT	1 cut(s)	36
MaeIII	GTNAC	1 cut(s)	719
MalI	GATC	1 cut(s)	371
MboI	GATC	1 cut(s)	369
MboII	GAAGA	6 cut(s)	19, 155, 695, 850, 856, 881
MhlI	GDGCHC	4 cut(s)	42, 199, 560, 768
MlsI	TGGCCA	1 cut(s)	382
MluCI	AATT	3 cut(s)	320, 364, 916
MluNI	TGGCCA	1 cut(s)	382
MlyI	GAGTC	1 cut(s)	822
MmeI	TCCRAC	2 cut(s)	83, 515
Mox20I	TGGCCA	1 cut(s)	382
Mph1103I	ATGCAT	1 cut(s)	654
MscI	TGGCCA	1 cut(s)	382
MseI	TTAA	2 cut(s)	80, 500
MslI	CAYNNNNRTG	2 cut(s)	617, 717
Msp20I	TGGCCA	1 cut(s)	382
MspA1I	CMGCKG	1 cut(s)	606
MspR9I	CCNGG	4 cut(s)	200, 231, 562, 636
Mva1269I	GAATGC	1 cut(s)	528
MvaI	CCWGG	4 cut(s)	200, 231, 562, 636
MwoI	GCNNNNNNNGC	2 cut(s)	37, 583
NcoI	CCATGG	2 cut(s)	166, 411
NdeII	GATC	1 cut(s)	369
NheI	GCTAGC	1 cut(s)	809
NlaIII	CATG	6 cut(s)	170, 256, 415, 652, 656, 716
NlaIV	GGNNCC	2 cut(s)	197, 949
NmeAIII	GCCGAG	1 cut(s)	877
NmuCI	GTSAC	1 cut(s)	719
NsiI	ATGCAT	1 cut(s)	654
NspI	RCATGY	1 cut(s)	656
OliI	CACNNNNGTG	1 cut(s)	617
PaeI	GCATGC	1 cut(s)	656
PciSI	GCTCTTC	1 cut(s)	708
PctI	GAATGC	1 cut(s)	528
PfeI	GAWTC	4 cut(s)	55, 171, 374, 798
PkrI	GCNGC	2 cut(s)	588, 608
PleI	GAGTC	1 cut(s)	822
PpsI	GAGTC	1 cut(s)	822
Ppu21I	YACGTR	1 cut(s)	37
Psp6I	CCWGG	4 cut(s)	198, 229, 560, 634
PspEI	GGTNACC	1 cut(s)	719
PspGI	CCWGG	4 cut(s)	198, 229, 560, 634
PspN4I	GGNNCC	2 cut(s)	197, 949
PspOMI	GGGCCC	1 cut(s)	195
PspPI	GGNCC	4 cut(s)	195, 196, 488, 948
PstI	CTGCAG	1 cut(s)	428
PvuII	CAGCTG	1 cut(s)	606
RsaI	GTAC	6 cut(s)	102, 422, 697, 735, 752, 887
RsaNI	GTAC	6 cut(s)	101, 421, 696, 734, 751, 886
RseI	CAYNNNNRTG	2 cut(s)	617, 717
SapI	GCTCTTC	1 cut(s)	708
SaqAI	TTAA	2 cut(s)	80, 500
SatI	GCNGC	2 cut(s)	587, 607
Sau3AI	GATC	1 cut(s)	369
Sau96I	GGNCC	4 cut(s)	195, 196, 488, 948
ScaI	AGTACT	2 cut(s)	422, 697
SchI	GAGTC	1 cut(s)	822
ScrFI	CCNGG	4 cut(s)	200, 231, 562, 636
SduI	GDGCHC	4 cut(s)	42, 199, 560, 768
SfaNI	GCATC	1 cut(s)	216
SfcI	CTRYAG	3 cut(s)	400, 424, 601
SinI	GGWCC	2 cut(s)	488, 948
SmiMI	CAYNNNNRTG	2 cut(s)	617, 717
SmlI	CTYRAG	2 cut(s)	689, 925
SmoI	CTYRAG	2 cut(s)	689, 925
SphI	GCATGC	1 cut(s)	656
Sse9I	AATT	3 cut(s)	320, 364, 916
SsiI	CCGC	2 cut(s)	587, 683
SspI	AATATT	1 cut(s)	316
SspMI	CTAG	6 cut(s)	188, 479, 578, 795, 810, 974
StyD4I	CCNGG	4 cut(s)	198, 229, 560, 634
StyI	CCWWGG	4 cut(s)	166, 357, 411, 478
TaaI	ACNGT	4 cut(s)	71, 538, 555, 821
TaiI	ACGT	1 cut(s)	39
TaqI	TCGA	4 cut(s)	111, 222, 372, 831
TasI	AATT	3 cut(s)	320, 364, 916
TatI	WGTACW	3 cut(s)	420, 695, 750
TauI	GCSGC	1 cut(s)	589
TfiI	GAWTC	4 cut(s)	55, 171, 374, 798
Tru1I	TTAA	2 cut(s)	80, 500
Tru9I	TTAA	2 cut(s)	80, 500
TscAI	CASTG	2 cut(s)	282, 783
TseFI	GTSAC	1 cut(s)	719
TseI	GCWGC	1 cut(s)	606
Tsp45I	GTSAC	1 cut(s)	719
TspDTI	ATGAA	5 cut(s)	156, 241, 452, 857, 882
TspGWI	ACGGA	1 cut(s)	534
TspRI	CASTG	2 cut(s)	282, 783
VneI	GTGCAC	1 cut(s)	764
VpaK11BI	GGWCC	2 cut(s)	488, 948
XapI	RAATTY	1 cut(s)	916
XceI	RCATGY	1 cut(s)	656
XcmI	CCANNNNNNNNNTGG	1 cut(s)	568
XmaJI	CCTAGG	1 cut(s)	478
XspI	CTAG	6 cut(s)	188, 479, 578, 795, 810, 974
ZrmI	AGTACT	2 cut(s)	422, 697
Zsp2I	ATGCAT	1 cut(s)	654

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.