Prupe.2G271600_v2.0.a1

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0011862
Physical Location & Seq
Forward (+)
27517353 .. 27519708
2356 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G271600.1

Sequence Viewer

Length: 1065 bp
GATGATGATAAAAGTTGTTCAAGCTCATTTTCAATCGGGAAGAGTGCACAAGAGAGGGGCTTGTCATATGTACCCGAGTGCTATGTAATTCCAACTTCACATCGTCCAAGTTTGACTCCAGACGTCGCCAATGTCCCCATTATTGATTTTGGCAAATTGAAACAAGGTTCTCATGAACGAGCAATAGTTATCCAAGAAATCAGAACAGCTTGTCGTCAACTAGGATTCTTTCAAGATGATATTCATATTGTCAACCATGGAATCTGTCAATCGGTGTTAGATGAGGCTCTTGCTTCGGCCTCGGAAATTTTCAAGTTGCCAGGTTCTGAGAAGGCCAAGTTCATGTCTGATGATGTTCACAAGCCAGTGAGGTATGGGACAAGCTTCAAGGATGGAACTGATAAGATTCAATTTTGGGGGGTGTTTCTCAAGCATTATGCTCACCCCTTGGCAGATTGGATCAATACCTGGCCTGACAATCCATCTAACTATAGGGAAACCATGGGAAAGTATTGCAAAGAAGTGAAGAAACTAAGCTTTGAGATAACGGAAGCCATCACTGAGAGCTTGGGGATAGGCCCAACCTACATGAGCAACAAACTGGAAGATGGGTTGCAAGTCATTACAGTCAACTGTTACCCACCATGCCCAAATCCTGAAATTGCACTAGGGTTGCCTCCTCATTCAGAATATAGCTGCTTAACCATTGTCCTTCAGAGCTGTCCGGGGCTCGAAATCATGCACGCTGAGGAAGGAGCCTGGAAACAAGTCCCCCAACTTCATGGTGCCCTACAAGTCCATGGGGGTGACCATTTTGAGGTGCTAAGCAATGGGTTGTACAAGAGCGTTGTGCAAAGGACCACATTGATCCGTGAGAGGACAAGAATCTCCATTGCAAGTCTGCATAGTTTGGGATTGGATGAGAAGATGGGAGCTGCCAAAGAGCTTGTGGATGAGGAGCATCCTGGGAGGTACAAAGAGAGCAGCTTCAAAGATTTTCTGAATTTTCCCTCCACCAATGATCTAAAAGAGGGGAAGAGCTTCATTAACACACTCAAAATATAG

Protein Analysis

355

Amino Acids

39.5

Weight (kDa)

5.88

Isoelectric Point (pI)

39.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011862)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G07480 AT5G07480
fragaria_vesca FvH4_7g26820 FvH4_7g30770 FvH4_7g30770
malus_domestica MD01G1176500.v1.1
prunus_persica Prupe.2G271600_v2.0.a1
pyrus_communis pycom01g18720
rosa_chinensis RchiOBHm_Chr1g0373511
rosa_laevigata RLG00000026820
rosa_multiflora Rmu_co8362229.1_g000001 Rmu_sc0002860.1_g000008
rosa_roxburghii Rroxscaffold_4G00284190
rosa_rugosa Rorug01G0377800
rosa_samantha Rh1AG387100 Rh1BG351500 Rh1CG364200 Rh1DG381900
rosa_wichuraiana Rw1G034820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 126
AccB1I GGYRCC 1 cut(s) 785
AclWI GGATC 2 cut(s) 467, 862
AcsI RAATTY 2 cut(s) 306, 1003
AcuI CTGAAG 1 cut(s) 698
AcyI GRCGYC 1 cut(s) 123
AfaI GTAC 3 cut(s) 72, 839, 974
AfiI CCNNNNNNNGG 1 cut(s) 817
AgsI TTSAA 8 cut(s) 21, 33, 160, 233, 313, 388, 410, 991
AjnI CCWGG 4 cut(s) 319, 467, 758, 964
Alw21I GWGCWC 1 cut(s) 49
Alw44I GTGCAC 1 cut(s) 45
AlwI GGATC 2 cut(s) 467, 862
AlwNI CAGNNNCTG 1 cut(s) 326
Ama87I CYCGRG 1 cut(s) 74
AoxI GGCC 4 cut(s) 297, 333, 470, 577
ApaLI GTGCAC 1 cut(s) 45
ApeKI GCWGC 3 cut(s) 696, 935, 984
ApoI RAATTY 2 cut(s) 306, 1003
Asp700I GAANNNNTTC 1 cut(s) 1040
AspS9I GGNCC 2 cut(s) 578, 858
AsuC2I CCSGG 1 cut(s) 726
AsuHPI GGTGA 2 cut(s) 434, 818
AvaI CYCGRG 1 cut(s) 74
AvaII GGWCC 1 cut(s) 858
BaeGI GKGCMC 2 cut(s) 49, 790
BanI GGYRCC 1 cut(s) 785
BanII GRGCYC 1 cut(s) 732
Bbv12I GWGCWC 1 cut(s) 49
BbvCI CCTCAGC 1 cut(s) 747
BbvI GCAGC 3 cut(s) 683, 922, 996
BccI CCATC 5 cut(s) 386, 490, 563, 602, 922
BciT130I CCWGG 4 cut(s) 321, 469, 760, 966
BcnI CCSGG 1 cut(s) 726
BfaI CTAG 2 cut(s) 221, 668
BfmI CTRYAG 1 cut(s) 490
BisI GCNGC 3 cut(s) 697, 936, 985
BlpI GCTNAGC 1 cut(s) 824
BlsI GCNGC 3 cut(s) 698, 937, 986
Bme1390I CCNGG 5 cut(s) 321, 469, 726, 760, 966
Bme18I GGWCC 1 cut(s) 858
BmeT110I CYCGRG 1 cut(s) 74
BmgT120I GGNCC 2 cut(s) 578, 858
BmiI GGNNCC 2 cut(s) 757, 787
BmrFI CCNGG 5 cut(s) 321, 469, 726, 760, 966
BmsI GCATC 1 cut(s) 970
BpmI CTGGAG 1 cut(s) 102
Bpu10I CCTNAGC 1 cut(s) 747
Bpu1102I GCTNAGC 1 cut(s) 824
BpuEI CTTGAG 1 cut(s) 413
BpuMI CCSGG 1 cut(s) 726
BsaHI GRCGYC 1 cut(s) 123
BsaJI CCNNGG 7 cut(s) 256, 300, 447, 501, 725, 799, 965
Bsc4I CCNNNNNNNGG 1 cut(s) 817
Bse1I ACTGG 2 cut(s) 365, 606
Bse3DI GCAATG 2 cut(s) 835, 891
BseBI CCWGG 4 cut(s) 321, 469, 760, 966
BseDI CCNNGG 7 cut(s) 256, 300, 447, 501, 725, 799, 965
BseGI GGATG 4 cut(s) 397, 925, 958, 961
BseLI CCNNNNNNNGG 1 cut(s) 817
BseMI GCAATG 2 cut(s) 835, 891
BseMII CTCAG 3 cut(s) 318, 552, 738
BseNI ACTGG 2 cut(s) 365, 606
BseRI GAGGAG 2 cut(s) 669, 971
BseSI GKGCMC 2 cut(s) 49, 790
BseXI GCAGC 3 cut(s) 683, 922, 996
BshFI GGCC 4 cut(s) 299, 335, 472, 579
BshNI GGYRCC 1 cut(s) 785
BsiHKAI GWGCWC 1 cut(s) 49
BsiHKCI CYCGRG 1 cut(s) 74
BsiSI CCGG 1 cut(s) 725
BslFI GGGAC 3 cut(s) 119, 391, 755
BslI CCNNNNNNNGG 1 cut(s) 817
BsmFI GGGAC 3 cut(s) 119, 391, 755
BsnI GGCC 4 cut(s) 299, 335, 472, 579
BsoBI CYCGRG 1 cut(s) 74
Bsp1286I GDGCHC 3 cut(s) 49, 732, 790
Bsp1407I TGTACA 1 cut(s) 837
Bsp143I GATC 3 cut(s) 459, 867, 1021
Bsp1720I GCTNAGC 1 cut(s) 824
Bsp19I CCATGG 3 cut(s) 256, 501, 799
BspANI GGCC 4 cut(s) 299, 335, 472, 579
BspCNI CTCAG 3 cut(s) 319, 553, 739
BspHI TCATGA 1 cut(s) 172
BspLI GGNNCC 2 cut(s) 757, 787
BspPI GGATC 2 cut(s) 467, 862
BspQI GCTCTTC 1 cut(s) 1031
BspT107I GGYRCC 1 cut(s) 785
BsrDI GCAATG 2 cut(s) 835, 891
BsrGI TGTACA 1 cut(s) 837
BsrI ACTGG 2 cut(s) 365, 606
BssECI CCNNGG 7 cut(s) 256, 300, 447, 501, 725, 799, 965
BssMI GATC 3 cut(s) 459, 867, 1021
BssNI GRCGYC 1 cut(s) 123
BssT1I CCWWGG 4 cut(s) 256, 447, 501, 799
Bst2UI CCWGG 4 cut(s) 321, 469, 760, 966
Bst4CI ACNGT 2 cut(s) 628, 635
Bst6I CTCTTC 2 cut(s) 35, 1031
BstACI GRCGYC 1 cut(s) 123
BstAUI TGTACA 1 cut(s) 837
BstC8I GCNNGC 1 cut(s) 744
BstDEI CTNAG 5 cut(s) 327, 533, 561, 747, 824
BstDSI CCRYGG 3 cut(s) 256, 501, 799
BstEII GGTNACC 1 cut(s) 806
BstF5I GGATG 4 cut(s) 397, 925, 958, 961
BstKTI GATC 3 cut(s) 462, 870, 1024
BstMBI GATC 3 cut(s) 459, 867, 1021
BstNI CCWGG 4 cut(s) 321, 469, 760, 966
BstPI GGTNACC 1 cut(s) 806
BstSCI CCNGG 5 cut(s) 319, 467, 724, 758, 964
BstSFI CTRYAG 1 cut(s) 490
BstSLI GKGCMC 2 cut(s) 49, 790
BstV1I GCAGC 3 cut(s) 683, 922, 996
BstXI CCANNNNNNTGG 1 cut(s) 782
BsuRI GGCC 4 cut(s) 299, 335, 472, 579
BtgI CCRYGG 3 cut(s) 256, 501, 799
BtsCI GGATG 4 cut(s) 397, 925, 958, 961
BtsIMutI CAGTG 2 cut(s) 372, 558
Cac8I GCNNGC 1 cut(s) 744
CaiI CAGNNNCTG 1 cut(s) 326
CciI TCATGA 1 cut(s) 172
Cfr13I GGNCC 2 cut(s) 578, 858
Csp6I GTAC 3 cut(s) 71, 838, 973
CviAII CATG 9 cut(s) 173, 257, 343, 502, 589, 645, 739, 782, 800
CviQI GTAC 3 cut(s) 71, 838, 973
DdeI CTNAG 5 cut(s) 327, 533, 561, 747, 824
DpnI GATC 3 cut(s) 461, 869, 1023
DpnII GATC 3 cut(s) 459, 867, 1021
Eam1104I CTCTTC 2 cut(s) 35, 1031
EarI CTCTTC 2 cut(s) 35, 1031
Eco130I CCWWGG 4 cut(s) 256, 447, 501, 799
Eco24I GRGCYC 1 cut(s) 732
Eco47I GGWCC 1 cut(s) 858
Eco57I CTGAAG 1 cut(s) 698
Eco88I CYCGRG 1 cut(s) 74
Eco91I GGTNACC 1 cut(s) 806
EcoO65I GGTNACC 1 cut(s) 806
EcoRII CCWGG 4 cut(s) 319, 467, 758, 964
EcoT14I CCWWGG 4 cut(s) 256, 447, 501, 799
EcoT38I GRGCYC 1 cut(s) 732
ErhI CCWWGG 4 cut(s) 256, 447, 501, 799
FaeI CATG 9 cut(s) 176, 260, 346, 505, 592, 648, 742, 785, 803
FaqI GGGAC 3 cut(s) 119, 391, 755
FatI CATG 9 cut(s) 172, 256, 342, 501, 588, 644, 738, 781, 799
FauNDI CATATG 1 cut(s) 67
Fnu4HI GCNGC 3 cut(s) 697, 936, 985
FokI GGATG 4 cut(s) 404, 932, 948, 965
FriOI GRGCYC 1 cut(s) 732
Fsp4HI GCNGC 3 cut(s) 697, 936, 985
FspBI CTAG 2 cut(s) 221, 668
GluI GCNGC 3 cut(s) 697, 936, 985
GsuI CTGGAG 1 cut(s) 102
HaeIII GGCC 4 cut(s) 299, 335, 472, 579
HapII CCGG 1 cut(s) 725
Hin1I GRCGYC 1 cut(s) 123
Hin1II CATG 9 cut(s) 176, 260, 346, 505, 592, 648, 742, 785, 803
HincII GTYRAC 3 cut(s) 218, 253, 631
HindII GTYRAC 3 cut(s) 218, 253, 631
HindIII AAGCTT 2 cut(s) 382, 535
HinfI GANTC 5 cut(s) 115, 225, 261, 406, 885
HpaII CCGG 1 cut(s) 725
HphI GGTGA 2 cut(s) 434, 818
Hpy166II GTNNAC 5 cut(s) 47, 218, 253, 358, 631
Hpy188I TCNGA 7 cut(s) 203, 304, 328, 349, 688, 717, 1002
Hpy188III TCNNGA 5 cut(s) 37, 119, 173, 233, 656
Hpy8I GTNNAC 5 cut(s) 47, 218, 253, 358, 631
Hpy99I CGWCG 1 cut(s) 128
HpyAV CCTTC 3 cut(s) 325, 722, 746
HpyCH4III ACNGT 2 cut(s) 628, 635
HpyCH4IV ACGT 1 cut(s) 123
HpyCH4V TGCA 8 cut(s) 47, 516, 616, 665, 742, 853, 896, 904
HpyF3I CTNAG 5 cut(s) 327, 533, 561, 747, 824
HpySE526I ACGT 1 cut(s) 123
Hsp92I GRCGYC 1 cut(s) 123
Hsp92II CATG 9 cut(s) 176, 260, 346, 505, 592, 648, 742, 785, 803
Kzo9I GATC 3 cut(s) 459, 867, 1021
LguI GCTCTTC 1 cut(s) 1031
LmnI GCTCC 3 cut(s) 755, 932, 958
Lsp1109I GCAGC 3 cut(s) 683, 922, 996
LweI GCATC 1 cut(s) 970
MaeI CTAG 2 cut(s) 221, 668
MaeII ACGT 1 cut(s) 123
MaeIII GTNAC 2 cut(s) 635, 806
MalI GATC 3 cut(s) 461, 869, 1023
MboI GATC 3 cut(s) 459, 867, 1021
MboII GAAGA 5 cut(s) 52, 538, 617, 937, 1048
MhlI GDGCHC 3 cut(s) 49, 732, 790
MluCI AATT 6 cut(s) 87, 155, 306, 410, 660, 1003
MlyI GAGTC 1 cut(s) 109
MmeI TCCRAC 1 cut(s) 116
MroXI GAANNNNTTC 1 cut(s) 1040
MseI TTAA 2 cut(s) 701, 1047
MslI CAYNNNNRTG 1 cut(s) 804
MspI CCGG 1 cut(s) 725
MspR9I CCNGG 5 cut(s) 321, 469, 726, 760, 966
MvaI CCWGG 4 cut(s) 321, 469, 760, 966
NciI CCSGG 1 cut(s) 726
NcoI CCATGG 3 cut(s) 256, 501, 799
NdeI CATATG 1 cut(s) 67
NdeII GATC 3 cut(s) 459, 867, 1021
NlaIII CATG 9 cut(s) 176, 260, 346, 505, 592, 648, 742, 785, 803
NlaIV GGNNCC 2 cut(s) 757, 787
NmuCI GTSAC 1 cut(s) 806
PagI TCATGA 1 cut(s) 172
PciSI GCTCTTC 1 cut(s) 1031
PdmI GAANNNNTTC 1 cut(s) 1040
PfeI GAWTC 4 cut(s) 225, 261, 406, 885
PkrI GCNGC 3 cut(s) 698, 937, 986
PleI GAGTC 1 cut(s) 109
PpsI GAGTC 1 cut(s) 109
Psp6I CCWGG 4 cut(s) 319, 467, 758, 964
PspEI GGTNACC 1 cut(s) 806
PspGI CCWGG 4 cut(s) 319, 467, 758, 964
PspN4I GGNNCC 2 cut(s) 757, 787
PspPI GGNCC 2 cut(s) 578, 858
PstNI CAGNNNCTG 1 cut(s) 326
RsaI GTAC 3 cut(s) 72, 839, 974
RsaNI GTAC 3 cut(s) 71, 838, 973
RseI CAYNNNNRTG 1 cut(s) 804
SapI GCTCTTC 1 cut(s) 1031
SaqAI TTAA 2 cut(s) 701, 1047
SatI GCNGC 3 cut(s) 697, 936, 985
Sau3AI GATC 3 cut(s) 459, 867, 1021
Sau96I GGNCC 2 cut(s) 578, 858
SchI GAGTC 1 cut(s) 109
ScrFI CCNGG 5 cut(s) 321, 469, 726, 760, 966
SduI GDGCHC 3 cut(s) 49, 732, 790
SfaNI GCATC 1 cut(s) 970
SfcI CTRYAG 1 cut(s) 490
SinI GGWCC 1 cut(s) 858
SmiMI CAYNNNNRTG 1 cut(s) 804
SmlI CTYRAG 1 cut(s) 428
SmoI CTYRAG 1 cut(s) 428
Sse9I AATT 6 cut(s) 87, 155, 306, 410, 660, 1003
SspMI CTAG 2 cut(s) 221, 668
StyD4I CCNGG 5 cut(s) 319, 467, 724, 758, 964
StyI CCWWGG 4 cut(s) 256, 447, 501, 799
TaaI ACNGT 2 cut(s) 628, 635
TaiI ACGT 1 cut(s) 126
TaqI TCGA 1 cut(s) 732
TasI AATT 6 cut(s) 87, 155, 306, 410, 660, 1003
TatI WGTACW 1 cut(s) 837
TfiI GAWTC 4 cut(s) 225, 261, 406, 885
Tru1I TTAA 2 cut(s) 701, 1047
Tru9I TTAA 2 cut(s) 701, 1047
TscAI CASTG 2 cut(s) 372, 565
TseFI GTSAC 1 cut(s) 806
TseI GCWGC 3 cut(s) 696, 935, 984
Tsp45I GTSAC 1 cut(s) 806
TspDTI ATGAA 5 cut(s) 189, 233, 331, 770, 1033
TspGWI ACGGA 2 cut(s) 563, 860
TspRI CASTG 2 cut(s) 372, 565
VneI GTGCAC 1 cut(s) 45
VpaK11BI GGWCC 1 cut(s) 858
XapI RAATTY 2 cut(s) 306, 1003
XcmI CCANNNNNNNNNTGG 1 cut(s) 946
XmnI GAANNNNTTC 1 cut(s) 1040
XspI CTAG 2 cut(s) 221, 668
ZraI GACGTC 1 cut(s) 124
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.