FvH4_7g28900

Sorbitol dehydrogenase-like

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
Physical Location & Seq
Reverse (-)
21339390 .. 21339898
509 bp
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UTR
Exon/CDS
Intron
FvH4_7g28900.t1

Sequence Viewer

Length: 249 bp
ATGCACGTCTTGAAGAGTCCAGAGTATCCCCAGTCTTATCAAACACTGATAGCAAACATGGGAAAGGGAGGGATACCACATGGAGATGACCAACAAGAGAACATGGCTGCTTGGCTTGTTGGTATCAACACCCTCAAGATTCAACGTTTCAAGCTCCCTGAACTTGGTATCAATTCCTTGCTTTCCCTTTTGAAGCGTTTTACTTTGATCACTGATTTTGAGATGAACCCCTTTGATTGTTTTGCTTGA

Protein Analysis

83

Amino Acids

9.3

Weight (kDa)

6.02

Isoelectric Point (pI)

37.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0018083)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 145
AfiI CCNNNNNNNGG 1 cut(s) 164
AgsI TTSAA 4 cut(s) 13, 143, 151, 193
AjiI CACGTC 1 cut(s) 7
AluBI AGCT 1 cut(s) 154
AluI AGCT 1 cut(s) 154
ApeKI GCWGC 1 cut(s) 107
BbvI GCAGC 1 cut(s) 94
BciVI GTATCC 2 cut(s) 36, 66
BclI TGATCA 1 cut(s) 207
BfuI GTATCC 2 cut(s) 36, 66
BisI GCNGC 1 cut(s) 108
BlsI GCNGC 1 cut(s) 109
BmgBI CACGTC 1 cut(s) 7
BmrI ACTGGG 1 cut(s) 25
BmuI ACTGGG 1 cut(s) 25
BpuEI CTTGAG 1 cut(s) 119
Bsc4I CCNNNNNNNGG 1 cut(s) 164
Bse1I ACTGG 1 cut(s) 31
BseLI CCNNNNNNNGG 1 cut(s) 164
BseNI ACTGG 1 cut(s) 31
BseXI GCAGC 1 cut(s) 94
BslI CCNNNNNNNGG 1 cut(s) 164
Bsp143I GATC 1 cut(s) 207
BsrI ACTGG 1 cut(s) 31
BssMI GATC 1 cut(s) 207
Bst6I CTCTTC 1 cut(s) 8
BstKTI GATC 1 cut(s) 210
BstMBI GATC 1 cut(s) 207
BstV1I GCAGC 1 cut(s) 94
BsuI GTATCC 2 cut(s) 36, 66
BtrI CACGTC 1 cut(s) 7
BtsIMutI CAGTG 2 cut(s) 44, 210
CviAII CATG 3 cut(s) 58, 80, 103
CviJI RGCY 3 cut(s) 107, 115, 154
CviKI_1 RGCY 3 cut(s) 107, 115, 154
DpnI GATC 1 cut(s) 209
DpnII GATC 1 cut(s) 207
Eam1104I CTCTTC 1 cut(s) 8
EarI CTCTTC 1 cut(s) 8
FaeI CATG 3 cut(s) 61, 83, 106
FaiI YATR 3 cut(s) 59, 81, 104
FatI CATG 3 cut(s) 57, 79, 102
FbaI TGATCA 1 cut(s) 207
Fnu4HI GCNGC 1 cut(s) 108
Fsp4HI GCNGC 1 cut(s) 108
GluI GCNGC 1 cut(s) 108
Hin1II CATG 3 cut(s) 61, 83, 106
HinfI GANTC 2 cut(s) 16, 139
Hpy188III TCNNGA 3 cut(s) 10, 20, 136
HpyCH4IV ACGT 2 cut(s) 6, 145
HpyCH4V TGCA 1 cut(s) 4
HpySE526I ACGT 2 cut(s) 6, 145
Hsp92II CATG 3 cut(s) 61, 83, 106
Ksp22I TGATCA 1 cut(s) 207
Kzo9I GATC 1 cut(s) 207
LmnI GCTCC 1 cut(s) 159
LpnPI CCDG 3 cut(s) 33, 44, 171
Lsp1109I GCAGC 1 cut(s) 94
MaeII ACGT 2 cut(s) 6, 145
MalI GATC 1 cut(s) 209
MboI GATC 1 cut(s) 207
MboII GAAGA 1 cut(s) 25
MluCI AATT 1 cut(s) 172
MlyI GAGTC 1 cut(s) 25
MnlI CCTC 2 cut(s) 62, 143
MslI CAYNNNNRTG 1 cut(s) 84
NdeII GATC 1 cut(s) 207
NlaIII CATG 3 cut(s) 61, 83, 106
PfeI GAWTC 1 cut(s) 139
PkrI GCNGC 1 cut(s) 109
PleI GAGTC 1 cut(s) 24
PpsI GAGTC 1 cut(s) 24
Psp1406I AACGTT 1 cut(s) 145
RseI CAYNNNNRTG 1 cut(s) 84
SatI GCNGC 1 cut(s) 108
Sau3AI GATC 1 cut(s) 207
SchI GAGTC 1 cut(s) 25
SetI ASST 3 cut(s) 9, 148, 156
SmiMI CAYNNNNRTG 1 cut(s) 84
SmlI CTYRAG 1 cut(s) 134
SmoI CTYRAG 1 cut(s) 134
Sse9I AATT 1 cut(s) 172
TaiI ACGT 2 cut(s) 9, 148
TasI AATT 1 cut(s) 172
TfiI GAWTC 1 cut(s) 139
TscAI CASTG 2 cut(s) 51, 217
TseI GCWGC 1 cut(s) 107
TspDTI ATGAA 1 cut(s) 239
TspRI CASTG 2 cut(s) 51, 217
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.